ORCID Profile
0000-0003-4719-5098
Current Organisations
USEPA Science Advisory Board
,
EnviSci Consulting, LLC
Does something not look right? The information on this page has been harvested from data sources that may not be up to date. We continue to work with information providers to improve coverage and quality. To report an issue, use the Feedback Form.
Publisher: Elsevier BV
Date: 09-2010
DOI: 10.1016/J.AQUATOX.2010.05.011
Abstract: Time is often not characterized as a variable in ecotoxicogenomic studies. In this study, temporal changes in gene expression were determined during exposure to crude oil and a subsequent recovery period. Juvenile rainbow trout, Oncorhynchus mykiss, were exposed for 96 h to the water accommodated fractions of 0.4, 2 or 10 mgl(-1) crude oil loadings. Following 96 h of exposure, fish were transferred to recovery tanks. Gill and liver s les were collected after 24 and 96 h of exposure, and after 96 h of recovery for RNA extraction and microarray analysis. Fluorescently labeled cDNA was hybridized against matched controls, using salmonid cDNA arrays. Each exposure scenario generated unique patterns of altered gene expression. More genes responded to crude oil in the gill than in the liver. In the gill, 1137 genes had altered expression at 24 h, 2003 genes had altered expression levels at 96 h of exposure, yet by 96 h of recovery, no genes were significantly altered in expression. In the liver at 10 mgl(-1), only five genes were changed at 24 h, yet 192 genes had altered expression after 96 h recovery. At 2 mgl(-1) in the liver, many genes had altered regulation at all three time points. The 0.4 mgl(-1) loading also showed 289 genes upregulated at 24 h after exposure. The Gene Ontology terms associated with altered expression in the liver suggested that the processes of protein synthesis, xenobiotic metabolism, and oxidoreductase activity were altered. The concentration-responsive expression profile of cytochrome P450 1A, a biomarker for oil exposure, did not predict the majority of gene expression profiles in any tissue or dose, since direct relationships with dose were not observed for most genes. While the genes and their associated functions agree with known modes of toxic action for crude oil, the gene lists obtained do not match our previously published work, presumably due to array analysis procedures. These results demonstrate that changes in gene expression with time and dose may be complicated, and should be characterized in controlled laboratory settings before attempts are made to interpret responses in field-collected organisms. Further, processes for analyzing microarray data need to be developed such that standardized gene lists are developed, or that analysis does not rely on lists of significantly altered genes before arrays can be further evaluated as a monitoring tool.
Publisher: Elsevier BV
Date: 09-2023
Publisher: Wiley
Date: 09-08-2019
DOI: 10.1002/IEAM.4160
Abstract: Produced water is the largest waste stream associated with oil and gas exploration and production operations. Most produced water generated onshore is managed by permitted injection in deep underground wells, but alternative disposal options including reuse are increasingly being considered. However, insufficient understanding of the composition and toxicity of produced water imposes significant constraints on effective management of potential short-term and long-term risks associated with such alternative uses. As interest builds for management options, such as surface discharge, livestock watering, irrigation, and other industrial uses, research is needed to assess produced-water hazards and exposures to both humans and the environment. This challenge affords an opportunity to capitalize on emerging risk assessment tools. Innovative and comprehensive approaches to filling data gaps and assessing produced water risks will be imperative. A group of experts from industry, academia, and government were assembled to define research needs to support objective decision making on the acceptability, or lack thereof, of produced water disposal alternatives. Presented here are key outcomes from that workshop and recommendations for a research framework to assess toxicity of produced water and associated risks from above ground discharge and reuse options. Integr Environ Assess Manag 2019 :677-682. © 2019 SETAC.
Publisher: Wiley
Date: 04-08-2010
DOI: 10.1002/ETC.245
Abstract: Traditional biomarkers for hydrocarbon exposure are not induced by all petroleum substances. The objective of this study was to determine if exposure to a crude oil and different refined oils would generate a common hydrocarbon-specific response in gene expression profiles that could be used as generic biomarkers of hydrocarbon exposure. Juvenile rainbow trout (Oncorhynchus mykiss) were exposed to the water accommodated fraction (WAF) of either kerosene, gas oil, heavy fuel oil, or crude oil for 96 h. Tissue was collected for RNA extraction and microarray analysis. Exposure to each WAF resulted in a different list of differentially regulated genes, with few genes in common across treatments. Exposure to crude oil WAF changed the expression of genes including cytochrome P4501A (CYP1A) and glutathione-S-transferase (GST) with known roles in detoxification pathways. These gene expression profiles were compared to others from previous experiments that used a erse suite of toxicants. Clustering algorithms successfully identified gene expression profiles resulting from hydrocarbon exposure. These preliminary analyses highlight the difficulties of using single genes as diagnostic of petroleum hydrocarbon exposures. Further work is needed to determine if multivariate transcriptomic-based biomarkers may be a more effective tool than single gene studies for exposure monitoring of different oils.
Location: United States of America
Location: United States of America
No related grants have been discovered for Thomas Parkerton.