ORCID Profile
0000-0001-8089-7599
Current Organisation
South Australian Museum
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Environmental Monitoring | Environmental Science and Management | Environmental Impact Assessment | Biogeography and Phylogeography
Ecosystem Assessment and Management at Regional or Larger Scales | Fresh, Ground and Surface Water Flora, Fauna and Biodiversity |
Publisher: Elsevier BV
Date: 11-2016
DOI: 10.1016/J.YMPEV.2016.07.026
Abstract: Groundwater calcrete aquifers of central Western Australia have been shown to contain a high ersity of stygobiont (subterranean aquatic) invertebrates, with each species confined to an in idual calcrete and the entire system resembling a 'subterranean archipelago' containing hundreds of isolated calcretes. Here, we utilised alternative s ling techniques above the water table and uncovered a significant fauna of subterranean terrestrial oniscidean isopods from the calcretes. We explored the ersity and evolution of this fauna using molecular analyses based on one mitochondrial gene, Cytochrome C Oxidase Subunit I (COI), two Ribosomal RNA genes (28S and 18S), and one protein coding nuclear gene, Lysyl-tRNA Synthetase (LysRS). The results from 12 calcretes showed the existence of 36 ergent DNA lineages belonging to four oniscidean families (Paraplatyarthridae, Armadillidae, Stenoniscidae and Philosciidae). Using a combination of phylogenetic and species delimitation methods, we hypothesized the occurrence of at least 27 putative new species of subterranean oniscideans, of which 24 taxa appeared to be restricted to an in idual calcrete, lending further support to the "subterranean island hypothesis". Three paraplatyarthrid species were present on adjacent calcretes and these exceptions possessed more ommatidia and body pigments compared with the calcrete-restricted taxa, and are likely to represent troglophiles. The occurrence of stenoniscid isopods in the calcretes of central Western Australia, a group previously only known from the marine littoral zone, suggests a link to the marine inundation of the Eucla basin during the Late Eocene. The current oniscidean subterranean fauna consists of groups known to be subtropical, littoral and benthic, reflecting different historical events that have shaped the evolution of the fauna in the calcretes.
Publisher: Oxford University Press (OUP)
Date: 2012
Publisher: Wiley
Date: 30-12-2017
DOI: 10.1111/ZSC.12265
Publisher: Cambridge University Press (CUP)
Date: 02-2004
Publisher: Magnolia Press
Date: 22-09-2022
DOI: 10.11646/ZOOTAXA.5188.6.4
Abstract: The Pilbara and nearby regions in north-western Western Australia have an exceptionally high ersity of short-range endemic invertebrates inhabiting threatened groundwater-dependent habitats. Amphipod crustaceans, in particular, are dominant in these communities, but are poorly understood taxonomically, with many undescribed species. Recent molecular phylogenetic analyses of Pilbara eriopisid hipods have, nonetheless, uncovered a previously unknown bio ersity. In this study, we formally establish a new genus, Pilbarana Stringer & King gen. nov., and describe two new species, P. grandis Stringer & King sp. nov. from Cane River Conservation Park and P. lowryi Stringer & King sp. nov. from the Fortescue River Basin near the Hamersley Range, using a combination of molecular and morphological data. The new genus is similar morphologically to the two additional Western Australian eriopisid genera, Nedsia Barnard & Williams, 1995 and Norcapensis Bradbury & Williams, 1997, but represents a genetically ergent, reciprocally monophyletic lineage, which can be differentiated by its vermiform body shape, the presence of an antennal sinus, and by the length and form of the antennae and uropods. This research signifies an important contribution to knowledge of Pilbara subterranean communities and has critical implications for future environmental impact assessments and conservation management.
Publisher: Public Library of Science (PLoS)
Date: 26-08-2015
Publisher: CSIRO Publishing
Date: 18-02-2022
DOI: 10.1071/IS21041
Abstract: Amphipod crustaceans comprise a significant and enigmatic component of Australian groundwater ecosystems, particularly in the Pilbara region of Western Australia. Many hipod species in the Pilbara, including species in the genus Nedsia Barnard & Williams, 1995, are considered short range endemics, poorly or contentiously defined by taxonomic treatments based on morphology alone and have uncertain distributions as a consequence of this taxonomy. A modern systematic revision of Nedsia is presented here, utilising both molecular and morphological analyses alongside distributional data to delineate species. We describe 13 new species of Nedsia, confirm three existing species and synonymise eight previously described species. Nedsia species are confirmed to be functionally morphologically cryptic, with COI ergences at the 5–20% level. We present comparatively reduced taxonomic descriptions for these cryptic hipod species in an effort to provide an accelerated pathway for future taxonomic work. The research provides the basis for future environmental impact assessments involving Nedsia species and ongoing monitoring of the groundwater communities these form part of in the resource-rich Pilbara region.
Publisher: Elsevier BV
Date: 07-2012
DOI: 10.1016/J.YMPEV.2012.03.010
Abstract: The crustacean family Parabathynellidae is an ancient and significant faunal component of subterranean ecosystems. Molecular data were generated in order to examine phylogenetic relationships amongst Australian genera and assess the species ersity of this group within Australia. We also used the resultant phylogenetic framework, in combination with an ancestral state reconstruction (ASR) analysis, to explore the evolution of two key morphological characters (number of segments of the first and second antennae), previously used to define genera, and assess the oligomerization principle (i.e. serial appendage reduction over time), which is commonly invoked in crustacean systematics. The ASR approach also allowed an assessment of whether there has been convergent evolution of appendage numbers during the evolution of Australian parabathynellids. Sequence data from the mtDNA COI and nDNA 18S rRNA genes were obtained from 32 parabathynellid species (100% of described genera and ~25% of described species) from key groundwater regions across Australia. Phylogenetic analyses revealed that species of each known genus, defined by traditional morphological methods, were monophyletic, suggesting that the commonly used generic characters are robust for defining distinct evolutionary lineages. Additionally, ancestral state reconstruction analysis provided evidence for multiple cases of convergent evolution for the two morphological characters evaluated, suggesting that caution needs to be shown when using these characters for elucidating phylogenetic relationships, particularly when there are few morphological characters available for reconstructing relationships. The ancestral state analysis contradicted the conventional view of parabathynellid evolution, which assumes that more simplified taxa (i.e. those with fewer-segmented appendages and setae) are derived and more complex taxa are primitive.
Publisher: CSIRO Publishing
Date: 2010
DOI: 10.1071/IS10038
Abstract: Australia was historically considered a poor prospect for subterranean fauna but, in reality, the continent holds a great variety of subterranean habitats, with associated faunas, found both in karst and non-karst environments. This paper critically examines the ersity of subterranean fauna in several key regions for the mostly arid western half of Australia. We aimed to document levels of species richness for major taxon groups and examine the degree of uniqueness of the fauna. We also wanted to compare the composition of these ecosystems, and their origins, with other regions of subterranean ersity world-wide. Using information on the number of ‘described’ and ‘known’ invertebrate species (recognised based on morphological and/or molecular data), we predict that the total subterranean fauna for the western half of the continent is 4140 species, of which ~10% is described and 9% is ‘known’ but not yet described. The stygofauna, water beetles, ostracods and copepods have the largest number of described species, while arachnids dominate the described troglofauna. Conversely, copepods, water beetles and isopods are the poorest known groups with less than 20% described species, while hexapods (comprising mostly Collembola, Coleoptera, Blattodea and Hemiptera) are the least known of the troglofauna. Compared with other regions of the world, we consider the Australian subterranean fauna to be unique in its ersity compared with the northern hemisphere for three key reasons: the range and ersity of subterranean habitats is both extensive and novel direct faunal links to ancient Pangaea and Gondwana are evident, emphasising their early biogeographic history and Miocene aridification, rather than Pleistocene post-ice age driven ersification events (as is predicted in the northern hemisphere), are likely to have dominated Australia’s subterranean speciation explosion. Finally, we predict that the geologically younger, although more poorly studied, eastern half of the Australian continent is unlikely to be as erse as the western half, except for stygofauna in porous media. Furthermore, based on similar geology, palaeogeography and tectonic history to that seen in the western parts of Australia, southern Africa, parts of South America and India may also yield similar subterranean bio ersity to that described here.
Publisher: Informa UK Limited
Date: 10-05-2004
Publisher: Wiley
Date: 29-09-2023
DOI: 10.1002/ECE3.10552
Publisher: Informa UK Limited
Date: 07-2004
Publisher: CSIRO Publishing
Date: 2011
DOI: 10.1071/IS10035
Abstract: Given the complex nature of freshwater catchment ides and emerging evidence of high levels of genetic ersity, there is great potential for cryptic species to exist among Australian freshwater hipod groups. Among the chiltoniid hipods, two congeneric species, Austrochiltonia australis (Sayce, 1901) and A. subtenuis (Sayce, 1902), have been widely recorded across southern Australia yet are poorly known and contentiously defined. A large fragment of the mitochondrial DNA cytochrome c oxidase I (COI) gene was examined and morphological ersity among populations assessed across the reported geographic range of the two putative species. The results confirmed A. australis and A. subtenuis as morphological and molecular species. In addition, two previously undetected and cryptic species from Tasmania are recognised – sister species to A. subtenuis and A. australis. Working conclusions provide evidence towards a more comprehensive systematic revision of the Chiltoniidae and present species information relevant to conservation and management efforts of Australian river systems. A key is presented to the chiltoniid hipods of southern Australia.
Publisher: Springer Science and Business Media LLC
Date: 17-09-2016
Publisher: Oxford University Press (OUP)
Date: 2007
DOI: 10.1651/S-2708.1
Publisher: CSIRO Publishing
Date: 2015
DOI: 10.1071/IS14036
Abstract: Cryptic species are frequently being discovered in refugial habitats, such as desert springs and groundwater systems. Unfortunately, many of these taxa remain as unnamed entities years after their initial discovery. Recent advances in the use of molecular data and coalescent analyses allow DNA-based delimitation of species to move from single locus, tree-based methods to multilocus coalescent analyses. This study compares two DNA-based approaches to delimit species of putatively cryptic freshwater hipods (Chiltoniidae) from desert springs in central Australia. In addition, a morphometric analysis of 11 characters was undertaken to determine whether the DNA-delimited species were morphologically distinguishable. The single locus method results in identification of lineages that are not supported as species under the multilocus coalescent analyses. We conclude that Wangiannachiltonia guzikae King, 2009, as currently circumscribed, represents six genetically distinct hipod species, and we describe and name these species despite no clear diagnosable morphological differences. Critically, all of these newly recognised species have extremely limited distributions, which increases the bio ersity significance of their desert spring habitat.
Publisher: CSIRO Publishing
Date: 2013
DOI: 10.1071/IS12033
Abstract: The putatively ancient subterranean crustacean family Parabathynellidae has been poorly studied, in part because of the problem of obtaining material from difficult to access subterranean habitats in which they live. Further, the systematics of the group has been complicated by their generally simplified morphology and isolated descriptions of new taxa in the absence of any phylogenetic framework. Using material from comprehensive field surveys and mitochondrial cytochrome c oxidase subunit I (COI) and nuclear 18S sequence data, plus morphology, a new genus is recognised, Arkaroolabathynella Abrams & King, gen. nov., from underground waters in the Flinders Ranges, South Australia. Arkaroolabathynella contains four genetically and morphologically distinct species, described as A. bispinosa Abrams & King, sp. nov., A. remkoi Abrams & King, sp. nov., A. robusta Abrams & King, sp. nov. and A. spriggi Abrams & King, sp. nov. Phylogenetic analysis also revealed a previously unknown ersity of parabathynellids from southern Australia, and a complex set of relationships with the eastern (New South Wales) and south-western (Western Australia) continental faunas. Additionally, this study showed that deep molecular ergences in parabathynellids are not always reflected in morphological ergence. A checklist to Australian parabathynellid genera and species is also provided.
Publisher: CSIRO Publishing
Date: 2015
DOI: 10.1071/IS15010
Abstract: A significant ersity of terrestrial oniscidean isopods was recently discovered in the subterranean ‘calcrete islands’ of Western Australia, but the species and higher-level systematic status of much of the fauna are currently uncertain. Here we focus on one group of species that was initially assigned to the genus Trichorhina (Platyarthridae), based on several shared characters, and investigate the phylogenetic relationships of these species to 21 oniscidean genera, including 13 known families, using 18S rDNA sequence data. We then present phylogenetic analyses using 28S-only and combined 18S, 28S rDNA and mitochondrial cytochrome c oxidase subunit I (COI) data for a more restricted s ling of taxa, and present results for a detailed morphological study of the antennae and other cephalic structures of exemplar taxa. Bayesian and maximum likelihood analyses of the extended 18S-only, the 28S-only and multi-gene datasets provide strong evidence for a distinct well-supported monophyletic group comprising the new Western Australian and one South American taxon. This clade is unrelated to all included members of Platyarthridae, which appears to be polyphyletic, and it forms a distinct group relative to other oniscidean families. Given these findings and the results of the morphological study, a new southern hemisphere oniscidean family, Paraplatyarthridae Javidkar & King, fam. nov. is erected based on Paraplatyarthrus subterraneus Javidkar & King, gen. & sp. nov. (type genus and species), and several undescribed taxa which occur in the arid (terrestrial and subterranean) regions of Western Australia and subtropical South America. Paraplatyarthridae is distinguishable from all other oniscidian families on a combination of character states including, among others, the presence of fan-like scale setae on the dorsal body, and the ventral second antenna with leaf-like scale setae and a furrow containing elongated hair-like capillary setae that form part of a water conducting system unique within Oniscidea. This study has important implications for the higher-level classification of oniscidean crustaceans and points to the need for a more detailed molecular phylogeny that includes a comprehensive s ling of southern hemisphere taxa.
Publisher: Oxford University Press (OUP)
Date: 07-2019
Abstract: Recent surveys of Australian arid-zone groundwater ecosystems have uncovered considerable species ersity and extreme endemism for the oniscidean isopod genus Haloniscus Chilton, 1920. Phylogenetic and species delimitation analyses have recognised several distinct species from the Great Artesian Basin springs in South Australia, inspiring a morphological reassessment of the genus and examination of specimens from the iconic Lake Eyre and Dalhousie Springs. We present a revised diagnosis of Haloniscus, transfer the genus from the family Scyphacidae to Philosciidae and describe four new species, H. fontanus Stringer, King & Taiti n. sp., H. microphthalmus Stringer, King & Taiti n. sp., H. rotundus Stringer, King & Taiti n. sp., and H. yardiyaensis Stringer, King & Taiti n. sp., based on combined morphological and molecular evidence. We compare the results of molecular-based species delimitation analyses with morphological data, provide distribution information, and present a key to the described species of Haloniscus. Two species presently included in Andricophiloscia Vandel, 1973, A. stepheni (Nicholls & Barnes, 1926) and A. pedisetosa Taiti & Humphreys, 2001, from Western Australia are also transferred to Haloniscus.
Publisher: CSIRO Publishing
Date: 2014
DOI: 10.1071/ZO13099
Abstract: Recent molecular and morphological analyses have shown that chiltoniid hipods, once thought to be a relictual group, are a erse and speciose family of Australian freshwater hipods. As part of a larger examination of the family, chiltoniids from Kangaroo Island in South Australia were collected and analysed using molecular (COI and 28S) and morphological methods in order to understand species distributional patterns and relationships. Kartachiltonia moodyi gen. nov., sp. nov., a spring-associated species endemic to the island, was discovered and populations of three additional mainland species (Austrochiltonia australis, A. dalhousiensis and A. subtenuis) were examined. The island populations of A. australis, A. dalhousiensis and A. subtenuis were found to form natural groups with differing haplotype coalescence times dating from the Early to Mid-Pleistocene. Numerous cycles of regional climate change throughout the Pleistocene are likely to have driven speciation in chiltoniid hipods in southern Australia and the presence of multiple chiltoniid species at Kangaroo Island indicates that it exists at a likely convergence of species distribution patterns. Three possible hypotheses to explain the evolution and ersity of chiltoniids in southern Australia are discussed as are evidence for potential introduction and long-distance dispersal events.
Publisher: Magnolia Press
Date: 16-03-2017
DOI: 10.11646/ZOOTAXA.4243.3.1
Abstract: The oniscidean fauna of Australia is generally poorly known but recent s ling has revealed a new family, Paraplatyarthridae, found in both terrestrial and groundwater calcretes of central Western Australia. The family was initially described based on a new genus and species, Paraplatyarthrus subterraneus Javidkar and King, 2015. Here we describe an additional five Paraplatyarthrus species from the Yilgarn region of Western Australia, based on both morphological and molecular evidence (COI ergences). Four species are subterranean: P. crebesconiscus Javidkar and King sp. nov., P. cunyuensis Javidkar and King sp. nov., P. occidentoniscus Javidkar and King sp. nov., and P. pallidus Javidkar and King sp. nov., and one is a surface species, P. nahidae Javidkar and King sp. nov. A key to their identification is provided along with information on their distribution. In addition, type material of the two described Australian species of Platyarthridae, Trichorhina australiensis Wahrberg, 1922 from Western Australia and T. tropicalis Lewis, 1998 from Queensland, are examined. Morphological reassessment of type material shows T. australiensis belongs to Paraplatyarthrus (comb. nov.) and that T. tropicalis is correctly placed in Trichorhina, confirming that the genus and family Platyarthridae occur in Australia.
Publisher: Museums Victoria
Date: 2009
Start Date: 08-2020
End Date: 12-2023
Amount: $490,000.00
Funder: Australian Research Council
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