ORCID Profile
0000-0002-2993-4144
Current Organisation
University of Tennessee
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Publisher: Oxford University Press (OUP)
Date: 06-12-2011
DOI: 10.1111/J.1574-6941.2011.01251.X
Abstract: Lagrangian studies of virus activity in pelagic environments over extended temporal scales are rare. To address this, viruses and bacteria were examined during the course of a natural phytoplankton bloom in the pelagic South Pacific Ocean east of New Zealand. Daily s les were collected in a mesoscale eddy from year days 263-278 (September 19th-October 4th, 2008). The productive bloom transitioned from a diatom to a pico- and nanoplankton-dominated system, resulting in chlorophyll a concentrations up to 2.43 μg L(-1) . Virus abundances fluctuated c. 10-fold (1.8 × 10(10) -1.3 × 10(11) L(-1) ) over 16 days. The production rates of virus particles were high compared with those reported in other marine systems, ranging from 1.4 × 10(10) to 2.1 × 10(11) L(-1) day(-1) . Our observations suggest viruses contributed significantly to the mortality of bacteria throughout the bloom, with 19-216% of the bacterial standing stock being lysed daily. This mortality released nutrient elements (N, Fe) that likely helped sustain the bloom through the s ling period. Parametric analyses found significant correlations with both biotic (e.g. potential host abundances) and abiotic parameters (e.g. nutrient concentrations, temperature). These observations demonstrate that viruses may be critical in the extended maintenance of regeneration-driven biological production.
Publisher: American Society for Microbiology
Date: 28-08-2014
Abstract: The benefits of using transgenic switchgrass with decreased levels of caffeic acid 3- O -methyltransferase (COMT) as biomass feedstock have been clearly demonstrated. However, its effect on the soil microbial community has not been assessed. Here we report metagenomic and metatranscriptomic analyses of root-associated soil from COMT switchgrass compared with nontransgenic counterparts.
Publisher: American Geophysical Union (AGU)
Date: 09-2012
DOI: 10.1029/2012GL053448
Publisher: Inter-Research Science Center
Date: 18-03-2013
DOI: 10.3354/AME01611
Publisher: PeerJ
Date: 16-10-2019
DOI: 10.7717/PEERJ.7887
Abstract: Genetic engineering has been used to decrease the lignin content and to change the lignin composition of switchgrass ( Panicum virgatum L.) to decrease cell wall recalcitrance to enable more efficient cellulosic biofuel production. Previous greenhouse and field studies showed that downregulation of the gene encoding switchgrass caffeic acid O -methyltransferase (COMT) and overexpression of the switchgrass PvMYB4 (MYB4) gene effectively improved ethanol yield. To understand potential environmental impacts of cultivating these transgenic bioenergy crops in the field, we quantified the effects of field cultivation of transgenic switchgrass on soil organic carbon (SOC) dynamics. Total and active SOC as well as soil respiration were measured in soils grown with two COMT-downregulated transgenic lines (COMT2 and COMT3), three MYB4-overexpressed transgenic lines (L1, L6, and L8), and their corresponding non-transgenic controls. No differences in total SOC, dissolved organic carbon (DOC), and permanganate oxidizable carbon (POXC) were detected between transgenic and non-transgenic treatments for both COMT (10.4–11.1 g kg −1 for SOC, 60.0–64.8 mg kg −1 for DOC, and 299–384 mg kg −1 for POXC) and MYB4 lines (6.89–8.21 g kg −1 for SOC, 56.0–61.1 mg kg −1 for DOC, and 177–199 mg kg −1 for POXC). Soil CO 2 -carbon (CO 2 -C) production from the COMT2 transgenic line was not significantly different from its non-transgenic control. In contrast, the COMT3 transgenic line had greater soil CO 2 -C production than its non-transgenic control (210 vs. 165 µg g −1 ) after 72 days of laboratory incubation. Combining the improvement in ethanol yield and biomass production reported in previous studies with negligible change in SOC and soil respiration, COMT2 could be a better biofuel feedstock than COMT3 for environmental conservation and cost-effective biofuel production. On the other hand, MYB4 transgenic line L8 produced more biomass and total ethanol per hectare while it released more CO 2 -C than the control (253 vs. 207 µg g −1 ). Long-term in situ monitoring of transgenic switchgrass systems using a suite of soil and environmental variables is needed to determine the sustainability of growing genetically modified bioenergy crops.
No related grants have been discovered for Jennifer DeBruyn.