Jed Fuhrman

The ocean sampling day consortium

Publisher: Oxford University Press (OUP)

Date: 19-06-2015

DOI: 10.1186/S13742-015-0066-5

The contribution of phytoplankton to ocean density gradients

Publisher: Elsevier BV

Date: 08-1989

DOI: 10.1016/0198-0149(89)90106-4

Mechanoreception in calanoid copepods

Publisher: Springer Science and Business Media LLC

Date: 03-1986

DOI: 10.1007/BF00409273

Virus-like particle distribution and abundance in sediments and overlying waters along eutrophication gradients in two subtropical estuaries

Publisher: Wiley

Date: 11-2001

DOI: 10.4319/LO.2001.46.7.1734

Minimum Information about an Uncultivated Virus Genome (MIUViG)

Publisher: Springer Science and Business Media LLC

Date: 17-12-2019

DOI: 10.1038/NBT.4306

Systematic, continental scale temporal monitoring of marine pelagic microbiota by the Australian Marine Microbial Biodiversity Initiative

Publisher: Springer Science and Business Media LLC

Date: 17-07-2018

DOI: 10.1038/SDATA.2018.130

Abstract: Sustained observations of microbial dynamics are rare, especially in southern hemisphere waters. The Australian Marine Microbial Bio ersity Initiative (AMMBI) provides methodologically standardized, continental scale, temporal phylogenetic licon sequencing data describing Bacteria , Archaea and microbial Eukarya assemblages. Sequence data is linked to extensive physical, biological and chemical oceanographic contextual information. S les are collected monthly to seasonally from multiple depths at seven sites: Darwin Harbour (Northern Territory), Yongala (Queensland), North Stradbroke Island (Queensland), Port Hacking (New South Wales), Maria Island (Tasmania), Kangaroo Island (South Australia), Rottnest Island (Western Australia). These sites span ~30 ° of latitude and ~38 ° longitude, range from tropical to cold temperate zones, and are influenced by both local and globally significant oceanographic and climatic features. All sequence datasets are provided in both raw and processed fashion. Currently 952 s les are publically available for bacteria and archaea which include 88,951,761 bacterial (72,435 unique) and 70,463,079 archaeal (24,205 unique) 16 S rRNA v1-3 gene sequences, and 388 s les are available for eukaryotes which include 39,801,050 (78,463 unique) 18 S rRNA v4 gene sequences.

A communal catalogue reveals Earth’s multiscale microbial diversity

Publisher: Springer Science and Business Media LLC

Date: 11-2017

DOI: 10.1038/NATURE24621

Abstract: Our growing awareness of the microbial world’s importance and ersity contrasts starkly with our limited understanding of its fundamental structure. Despite recent advances in DNA sequencing, a lack of standardized protocols and common analytical frameworks impedes comparisons among studies, hindering the development of global inferences about microbial life on Earth. Here we present a meta-analysis of microbial community s les collected by hundreds of researchers for the Earth Microbiome Project. Coordinated protocols and new analytical methods, particularly the use of exact sequences instead of clustered operational taxonomic units, enable bacterial and archaeal ribosomal RNA gene sequences to be followed across multiple studies and allow us to explore patterns of ersity at an unprecedented scale. The result is both a reference database giving global context to DNA sequence data and a framework for incorporating data from future studies, fostering increasingly complete characterization of Earth’s microbial ersity.

Unlocking the potential of metagenomics through replicated experimental design

Publisher: Springer Science and Business Media LLC

Date: 06-2012

DOI: 10.1038/NBT.2235

Global biogeography of SAR11 marine bacteria

Publisher: EMBO

Date: 2012

DOI: 10.1038/MSB.2012.28

Microzones surrounding phytoplankton form the basis for a stratified marine microbial ecosystem

Publisher: Springer Science and Business Media LLC

Date: 07-1985

DOI: 10.1038/316058A0

Gyrotaxis as a new mechanism for generating spatial heterogeneity and migration in microplankton

Publisher: Wiley

Date: 1990

DOI: 10.4319/LO.1990.35.1.0123

Massachusetts Institute Of Technology

Location: United States of America

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University Of California San Diego Scripps Institution Of Oceanography

Location: United States of America

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University Of Southern California

Location: United States of America

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Discovery Projects - Grant ID: DP150102326

Start Date: 06-2015

End Date: 12-2019

Amount: $532,200.00

Funder: Australian Research Council

Discovery Projects - Grant ID: DP170101925

Start Date: 2017

End Date: 12-2020

Amount: $589,000.00

Funder: Australian Research Council

Discovery Projects - Grant ID: DP0988002

Start Date: 2009

End Date: 12-2015

Amount: $695,000.00

Funder: Australian Research Council

Linkage Projects - Grant ID: LP130100508

Start Date: 07-2013

End Date: 06-2016

Amount: $447,000.00

Funder: Australian Research Council