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0000-0001-5558-1904
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James Cook University
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Minderoo Foundation
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Evolutionary impacts of climate change | Conservation and biodiversity | Evolutionary biology | Molecular evolution |
Publisher: Wiley
Date: 06-2020
DOI: 10.1111/MEC.15482
Publisher: Wiley
Date: 19-05-2022
DOI: 10.1111/GCB.16212
Abstract: Recent warm temperatures driven by climate change have caused mass coral bleaching and mortality across the world, prompting managers, policymakers, and conservation practitioners to embrace restoration as a strategy to sustain coral reefs. Despite a proliferation of new coral reef restoration efforts globally and increasing scientific recognition and research on interventions aimed at supporting reef resilience to climate impacts, few restoration programs are currently incorporating climate change and resilience in project design. As climate change will continue to degrade coral reefs for decades to come, guidance is needed to support managers and restoration practitioners to conduct restoration that promotes resilience through enhanced coral reef recovery, resistance, and adaptation. Here, we address this critical implementation gap by providing recommendations that integrate resilience principles into restoration design and practice, including for project planning and design, coral selection, site selection, and broader ecosystem context. We also discuss future opportunities to improve restoration methods to support enhanced outcomes for coral reefs in response to climate change. As coral reefs are one of the most vulnerable ecosystems to climate change, interventions that enhance reef resilience will help to ensure restoration efforts have a greater chance of success in a warming world. They are also more likely to provide essential contributions to global targets to protect natural bio ersity and the human communities that rely on reefs.
Publisher: Springer Science and Business Media LLC
Date: 16-09-2019
DOI: 10.1038/S41598-019-50045-Y
Abstract: Adult organisms may “prime” their offspring for environmental change through a number of genetic and non-genetic mechanisms, termed parental effects. Some coral species may shuffle the proportions of Symbiodiniaceae within their endosymbiotic communities, subsequently altering their thermal tolerance, but it is unclear if shuffled communities are transferred to offspring. We evaluated Symbiodiniaceae community composition in tagged colonies of Montipora digitata over two successive annual spawning seasons and the 2016 bleaching event on the Great Barrier Reef. ITS2 licon sequencing was applied to four families (four maternal colonies and 10–12 eggs per family) previously s led and sequenced the year before to characterize shuffling potential in these M. digitata colonies and determine if shuffled abundances were preserved in gametes. Symbiont densities and photochemical efficiencies differed significantly among adults in 2016, suggesting differential responses to increased temperatures. Low-abundance (“background”) sequence variants differed more among years than between maternal colonies and offspring. Results indicate that shuffling can occur in a canonically ‘stable’ symbiosis, and that the shuffled community is heritable. Hence, acclimatory changes like shuffling of the Symbiodiniaceae community are not limited to the lifetime of an adult coral and that shuffled communities are inherited across generations in a species with vertical symbiont transmission. Although previously hypothesized, to our knowledge, this is the first evidence that shuffled Symbiodiniaceae communities (at both the inter- and intra- genera level) can be inherited by offspring and supports the hypothesis that shuffling in microbial communities may serve as a mechanism of rapid coral acclimation to changing environmental conditions.
Publisher: PeerJ
Date: 15-06-2018
DOI: 10.7717/PEERJ.5022
Abstract: Coral-dinoflagellate symbiosis is the key biological interaction enabling existence of modern-type coral reefs, but the mechanisms regulating initial host–symbiont attraction, recognition and symbiont proliferation thus far remain largely unclear. A common reef-building coral, Acropora millepora, displays conspicuous fluorescent polymorphism during all phases of its life cycle, due to the differential expression of fluorescent proteins (FPs) of the green fluorescent protein family. In this study, we examine whether fluorescent variation in young coral juveniles exposed to natural sediments is associated with the uptake of disparate Symbiodinium assemblages determined using ITS-2 deep sequencing. We found that Symbiodinium assemblages varied significantly when redness values varied, specifically in regards to abundances of clades A and C. Whether fluorescence was quantified as a categorical or continuous trait, clade A was found at higher abundances in redder juveniles. These preliminary results suggest juvenile fluorescence may be associated with Symbiodinium uptake, potentially acting as either an attractant to ecologically specific types or as a mechanism to modulate the internal light environment to control Symbiodinium physiology within the host.
Publisher: Inter-Research Science Center
Date: 30-07-2018
DOI: 10.3354/MEPS12652
Publisher: Springer Science and Business Media LLC
Date: 29-01-2021
DOI: 10.1038/S41597-020-00793-8
Abstract: The discovery of multi-species synchronous spawning of scleractinian corals on the Great Barrier Reef in the 1980s stimulated an extraordinary effort to document spawning times in other parts of the globe. Unfortunately, most of these data remain unpublished which limits our understanding of regional and global reproductive patterns. The Coral Spawning Database (CSD) collates much of these disparate data into a single place. The CSD includes 6178 observations (3085 of which were unpublished) of the time or day of spawning for over 300 scleractinian species in 61 genera from 101 sites in the Indo-Pacific. The goal of the CSD is to provide open access to coral spawning data to accelerate our understanding of coral reproductive biology and to provide a baseline against which to evaluate any future changes in reproductive phenology.
Publisher: Cold Spring Harbor Laboratory
Date: 04-11-2021
DOI: 10.1101/2021.11.03.467090
Abstract: The symbiotic relationship between coral and its endosymbiotic algae, Symbiodiniaceae, greatly influences the hosts’ potential to withstand environmental stress. To date, the effects of climate change on this relationship has primarily focused on adult corals. Uncovering the effects of environmental stress on the establishment and development of this symbiosis in early life stages is critical for predicting how corals may respond to climate change. To determine the impacts of future climate projections on the establishment of symbionts in juvenile corals, ITS2 licon sequencing of single coral juveniles was applied to Goniastrea retiformis and Acropora millepora before and after exposure to three climate conditions of varying temperature and p CO 2 levels (current and RCP8.5 in 2050 and 2100). Compared to ambient conditions, juvenile corals experienced shuffling in the relative abundance of Cladocopium (C1m, reduction) to Durusdinium (D1 and D1a, increase) over time. We calculated a novel risk metric incorporating functional redundancy and likelihood of impact on host physiology to identify the loss of D1a as a ‘low risk’ to the coral compared to the loss of “higher risk” taxa like D1 and C1m. Although the increase in stress tolerant Durusdinium under future warming was encouraging for A. millepora , by 2100, G. retiformis communities displayed signs of symbiosis de-regulation, suggesting this acclimatory mechanism may have species-specific thresholds. These results emphasize the need for understanding of long-term effects of climate change induced stress on coral juveniles and their potential for increased acclimation to heat tolerance through changes in symbiosis. Here we assessed changes in the uptake and establishment of Symbiodiniaceae in the early lifehistory stages of two coral species under future climate scenarios. Our study represents the first such assessment of future climate change projections (increased temperature and p CO 2 ) influencing Symbiodiniaceae acquisition and specifically shows a community structure dominated by the stress tolerant genus Durusdinium . We also develop a novel risk metric that includes taxonomic function and redundancy to estimate the impact of symbiont taxa changes on coral physiology. Through the risk metric, we relate the stress-induced changes in symbiont community structure to the likelihood of functional loss to better understand the extent to which these changes may lead to a decrease in coral health.
Publisher: Wiley
Date: 30-03-2022
DOI: 10.1111/COBI.13890
Abstract: Efforts are accelerating to protect and restore ecosystems globally. With trillions of dollars in ecosystem services at stake, no clear framework exists for developing or prioritizing approaches to restore coral reefs even as efforts and investment opportunities to do so grow worldwide. Restoration may buy time for climate change mitigation, but it lacks rigorous guidance to meet objectives of scalability and effectiveness. Lessons from restoration of terrestrial ecosystems can and should be rapidly adopted for coral reef restoration. We propose how the 10 golden rules of effective forest restoration can be translated to accelerate efforts to restore coral reefs based on established principles of resilience, management, and local stewardship. We summarize steps to undertake reef restoration as a management strategy in the context of the erse ecosystem service values that coral reefs provide. Outlining a clear blueprint is timely as more stakeholders seek to undertake restoration as the UN Decade on Ecosystem Restoration begins.
Publisher: Wiley
Date: 11-04-2018
DOI: 10.1111/REC.12695
Publisher: Inter-Research Science Center
Date: 06-02-2020
DOI: 10.3354/MEPS13206
Abstract: Coral-reef ecosystems are experiencing frequent and severe disturbance events that are reducing global coral abundance and potentially overwhelming the natural capacity for reefs to recover. While mitigation strategies for climate warming and other anthropogenic disturbances are implemented, coral restoration programmes are being established worldwide as an additional conservation measure to minimise coral loss and enhance coral recovery. Current restoration efforts predominantly rely on asexually produced coral fragments—a process with inherent practical constraints on the genetic ersity conserved and the spatial scale achieved. Because the resilience of coral communities has hitherto relied on regular renewal with natural recruits, the scaling-up of restoration programmes would benefit from greater use of sexually produced corals, which is an approach that is gaining momentum. Here we review the present state of knowledge of scleractinian coral sexual reproduction in the context of reef restoration, with a focus on broadcast-spawning corals. We identify key knowledge gaps and bottlenecks that currently constrain the sexual production of corals and consider the feasibility of using sexually produced corals for scaling-up restoration to the reef- and reef-system scales.
Publisher: Cold Spring Harbor Laboratory
Date: 08-08-2017
DOI: 10.1101/173591
Abstract: Determining the extent to which Symbiodinium communities in corals are inherited versus environmentally-acquired is fundamental to understanding coral resilience and to predicting coral responses to stressors like warming oceans that disrupt this critical endosymbiosis. We examined the fidelity with which Symbiodinium communities in the brooding coral Seriatopora hystrix are vertically transmitted and the extent to which communities are genetically regulated, by genotyping 60 larvae and their parents (9 maternal and 45 paternal colonies) using high throughput sequencing of the ITS-2 locus. Unexpectedly, Symbiodinium communities associated with brooded larvae were distinct from those within parent colonies, including the presence of types not detected in adults. Bayesian heritability (h 2 ) analysis revealed that 33% of variability in larval Symbiodinium communities was genetically controlled. Results highlight flexibility in the establishment of larval communities and overturn the paradigm that symbiont transmission is exclusively vertical in brooding corals. Instead, we show that Symbiodinium transmission in S. hystrix involves a mixed-mode strategy, similar to many terrestrial invertebrate symbioses. Also, variation in the abundances of common Symbiodinium types among adult communities suggests that microhabitat differences influence the structure of in hospite Symbiodinium communities. Partial genetic regulation coupled with flexibility in the environmentally-acquired component of larval Symbiodinium communities implies that corals with vertical transmission, like S. hystrix, may be more resilient to environmental change than previously thought.
Publisher: Cold Spring Harbor Laboratory
Date: 27-02-2021
DOI: 10.1101/2021.02.25.432972
Abstract: The unprecedented rate of environmental change in the Anthropocene poses evolutionary challenges for wild populations globally. Active human interventions are being increasingly considered to accelerate natural adaptive processes. Evolutionary models can evaluate how species may fare under future climate, elucidate which evolutionary processes are critical to rapid adaptation, and how active interventions may influence fitness trajectories of organisms. Here we use polygenic metapopulation adaptation models to quantify the relative importance (effect sizes) of different eco-evolutionary parameters on the rates of adaptation in wild populations i) without active interventions, and ii) under a subset of active interventions. We demonstrate that genetic ersity (heterozygosity, He), population connectivity and the effect size of additive genetic variance are the primary drivers of natural adaptation rates. We quantify the effect sizes of these parameters on population fitness across three proposed assisted evolution scenarios and identify critical thresholds for intervention effectiveness and implementation. Specifically, the interventions tested here were most effective at low levels of genetic ersity in target populations (He 0.2) and when timed during a cold-to-warm phase of an ENSO-like oscillation. Beneficial levels of connectivity were highly dependent on desired outcomes for the meta-population. We also present a global meta-analysis of genetic ersity in tropical reef-building corals as a case study of how thresholds derived from evolutionary models can be used to guide decision making by managers. We find genetic ersity to be highly variable by coral taxon and region, highlighting how thresholds from evolutionary models can be used in conjunction with empirical data to assess intervention needs and priorities. Finally, we highlight the critical knowledge and data gaps to produce the next suite of applied models for conservation management decision-support.
Publisher: Wiley
Date: 04-02-2021
DOI: 10.1111/REC.13342
Abstract: Projected increases in sea surface temperatures will exceed corals' ability to withstand heat stress within this century. Experimental evolution of cultured symbionts (Symbiodiniaceae) at high temperatures followed by reintroduction into corals can enhance coral heat tolerance. Several studies have selected for enhanced tolerance in Cladocopium goreaui (C1) over multiple time scales and then compared the performance of coral juveniles infected with the heat‐tolerant C1 selected strain (SS) to the performance of juveniles infected with the C1 wild type (WT). To derive lessons about host benefits when symbionts are experimentally selected, here we compare the performance of SS‐ and WT‐juveniles after 21 cell generations of heat selection versus longer periods (73–131) in recently published experiments. After 21 generations, we found rapid improvement in heat tolerance of SS through an overall shift in the mean tolerance to temperature. This did not translate to improved growth and survivorship of the coral. Specifically, survival did not differ significantly between juveniles of Acropora tenuis hosting WT versus SS at any temperature. Juveniles infected with WT exhibited greater skeletal growth than those infected with SS at 27 and 31°C but not at 32.5°C. SS‐juvenile symbiont cell densities increased significantly at 27°C relative to SS‐juveniles in the 31 and 32.5°C. Photosynthetic efficiencies in SS‐juveniles were higher compared to WT‐juveniles at 31°C, equal at 27°C, and lower at 32.5°C. These results suggest that selection over longer generation ( ) times will be needed to confer host benefits and will be dependent on the stability of this association being maintained in nature.
Publisher: Wiley
Date: 17-11-2020
DOI: 10.1111/REC.13069
Publisher: Wiley
Date: 02-09-2019
DOI: 10.1002/ECE3.5616
Publisher: The Company of Biologists
Date: 08-03-2022
DOI: 10.1242/JEB.243344
Abstract: Ocean temperatures continue to rise owing to climate change, but it is unclear whether heat tolerance of marine organisms will keep pace with warming. Understanding how tolerance scales from in iduals to species and quantifying adaptive potentials is essential to forecasting responses to warming. We reproductively crossed corals from a globally distributed species (Acropora tenuis) on the Great Barrier Reef (Australia) from three thermally distinct reefs to create 85 offspring lineages. In iduals were experimentally exposed to temperatures (27.5, 31 and 35.5°C) in adult and two critical early life stages (larval and settlement) to assess acquired heat tolerance via outcrossing of offspring phenotypes by comparing five physiological responses (photosynthetic yields, bleaching, necrosis, settlement and survival). Adaptive potentials and physiological reaction norms were calculated across three stages to integrate heat tolerance at different biological scales. Selective breeding improved larval survival to heat by 1.5–2.5× but did not result in substantial enhancement of settlement, although population crosses were significantly different. Under heat stress, adults were less variable compared with larval responses in warmer reefs than in the cooler reef. Adults and offspring also differed in their mean population responses, likely underpinned by heat stress imposing strong ergent selection on adults. These results have implications for downstream selection during reproduction, evidenced by variability in a conserved heat tolerance response across offspring lineages. These results inform our ability to forecast the impacts of climate change on wild populations of corals and will aid in developing novel conservation tools such as the assisted evolution of at-risk species.
Publisher: Wiley
Date: 30-08-2022
Abstract: Several s ling and measurement strategies have been developed to assess biological forms in three dimensions, including corals. However, the effectiveness (in speed and precision) of current three‐dimensional (3D) methods in scanning and model construction are challenging at small scales (μm–mm). In this paper, a practical 3D scanning and model construction tool using an intra‐oral dental scanner was assessed to measure the surface area and volume of coral juveniles across multiple species. Intra‐oral scanners using confocal imaging are fast, precise to the μm scale and safe to use with live tissue, thereby eliminating the need to harm or kill the animals. The trial was conducted at the National Sea Simulator at the Australian Institute of Marine Science. High‐quality 3D scans of in idual coral juveniles were successfully generated and integrated automatically into high‐resolution (μm) mesh from point clouds. The attained average scanning efficiency was min/in idual, without a significant difference in speed given coral complexity or between live colonies or dead coral skeletons. Overall, this fast and precise system could become a promising tool for marine environmental surveys and restoration initiatives. This tool also removes the need to sacrifice animals for measurement analysis, thereby increasing conservation and animal welfare.
Publisher: Cold Spring Harbor Laboratory
Date: 08-10-2021
DOI: 10.1101/2021.10.06.463349
Abstract: Ocean temperatures continue to rise due to climate change but it is unclear if heat tolerance of marine organisms will keep pace with warming. Understanding how tolerance scales from in iduals to species and quantifying adaptive potentials is essential to forecasting responses to warming. We reproductively crossed corals from a globally distributed species ( Acropora tenuis ) on the Great Barrier Reef (Australia) from three thermally distinct reefs to create 85 offspring lineages. In iduals were experimentally exposed to temperatures (27.5, 31, and 35.5 °C) in adult and two critical early life stages (larval and settlement) to assess acquired heat tolerance via outcrossing of offspring phenotypes by comparing five physiological responses (photosynthetic yields, bleaching, necrosis, settlement, and survival). Adaptive potentials and physiological reaction norms were calculated across three stages to integrate heat tolerance at different biological scales. Selective breeding improved larval survival to heat by 1.5 - 2.5x but did not result in substantial enhancement of settlement, although population crosses were significantly different. At heat, adults were less variable compared to larval responses in warmer reefs compared to the cooler reef. Adults and offspring also differed in their mean population responses, likely underpinned by heat stress imposing strong ergent selection on adults. These results have implications for downstream selection during reproduction, evidenced by variability in a conserved heat tolerance response across offspring lineages. These results inform our ability to forecast the impacts of climate change on wild populations of corals and will aid in developing novel conservation tools like the assisted evolution of at-risk species. Heat stress exerts disruptive selection on adult corals. This likely underpins variability in offspring survival and results in differences in offspring responses to selection.
Publisher: Frontiers Media SA
Date: 09-12-2022
DOI: 10.3389/FMARS.2022.947989
Abstract: The unprecedented rate of environmental change in the Anthropocene poses evolutionary challenges for wild populations globally. Active human-mediated interventions are being increasingly considered to accelerate natural adaptive processes. Where experimentation is challenging, evolutionary models can evaluate how species may fare under future climate, elucidate which evolutionary processes are critical to rapid adaptation, and how active interventions may influence fitness trajectories of organisms. Here we use polygenic metapopulation adaptation models to quantify the relative importance (effect sizes) of different eco-evolutionary parameters on the rates of adaptation in wild populations i) without active interventions, and ii) under a subset of active interventions. We demonstrate that genetic ersity (heterozygosity, He), population connectivity and the effect size of additive genetic variance are the primary drivers of natural adaptation rates. We quantify the effect sizes of these parameters on population fitness across three proposed assisted evolution scenarios and identify critical thresholds for intervention effectiveness and implementation. Specifically, the interventions tested here were most effective at low levels of genetic ersity in target populations (He & 0.2) and when timed during a cold-to-warm phase of an ENSO-like oscillation. Beneficial levels of connectivity were highly dependent on desired outcomes for the meta-population. We also present a global meta-analysis of genetic ersity in tropical reef-building corals as a case study of how thresholds derived from evolutionary models can be used to guide decision making by managers. We find genetic ersity to be highly variable by coral taxon and region, highlighting how thresholds from evolutionary models can be used in conjunction with empirical data to assess intervention needs and priorities. Quantitatively characterizing these key thresholds should provide managers, conservationists, and practitioners with a starting point for evaluating the necessity, risks and benefits of genetic interventions of wild species with large populations sizes. Finally, we highlight the critical knowledge and data gaps to produce the next suite of applied models for conservation management decision-support.
Publisher: Springer Science and Business Media LLC
Date: 29-03-2022
DOI: 10.1038/S41467-022-28956-8
Abstract: Finding coral reefs resilient to climate warming is challenging given the large spatial scale of reef ecosystems. Methods are needed to predict the location of corals with heritable tolerance to high temperatures. Here, we combine Great Barrier Reef-scale remote sensing with breeding experiments that estimate larval and juvenile coral survival under exposure to high temperatures. Using reproductive corals collected from the northern and central Great Barrier Reef, we develop forecasting models to locate reefs harbouring corals capable of producing offspring with increased heat tolerance of an additional 3.4° heating weeks (~3 °C). Our findings predict hundreds of reefs (~7.5%) may be home to corals that have high and heritable heat-tolerance in habitats with high daily and annual temperature ranges and historically variable heat stress. The locations identified represent targets for protection and consideration as a source of corals for use in restoration of degraded reefs given their potential to resist climate change impacts and repopulate reefs with tolerant offspring.
Publisher: Springer Science and Business Media LLC
Date: 15-08-2017
DOI: 10.1038/S41598-017-08179-4
Abstract: The dinoflagellate-coral partnership influences the coral holobiont’s tolerance to thermal stress and bleaching. However, the comparative roles of host genetic versus environmental factors in determining the composition of this symbiosis are largely unknown. Here we quantify the heritability of the initial Symbiodinium communities for two broadcast-spawning corals with different symbiont transmission modes: Acropora tenuis has environmental acquisition, whereas Montipora digitata has maternal transmission. Using high throughput sequencing of the ITS-2 region to characterize communities in parents, juveniles and eggs, we describe previously undocumented Symbiodinium ersity and dynamics in both corals. After one month of uptake in the field, Symbiodinium communities associated with A . tenuis juveniles were dominated by A3, C1, D1, A-type CCMP828, and D1a in proportional abundances conserved between experiments in two years. M . digitata eggs were predominantly characterized by C15, D1, and A3. In contrast to current paradigms, host genetic influences accounted for a surprising 29% of phenotypic variation in Symbiodinium communities in the horizontally-transmitting A . tenuis , but only 62% in the vertically-transmitting M . digitata . Our results reveal hitherto unknown flexibility in the acquisition of Symbiodinium communities and substantial heritability in both species, providing material for selection to produce partnerships that are locally adapted to changing environmental conditions.
Publisher: Cold Spring Harbor Laboratory
Date: 13-02-2018
DOI: 10.1101/264796
Abstract: Adult organisms may “prime” their offspring for environmental change through a number of genetic and non-genetic mechanisms, termed parental effects. Some coral species can alter their thermal tolerance by shuffling the proportions of Symbiodinium types within their endosymbiotic communities, but it is unclear if this plasticity can be transferred to offspring in corals that have maternal symbiont transmission. We evaluated symbiont community composition in tagged colonies of Montipora digitata from Orpheus Island, Australia, over two successive annual spawning seasons, the second of which overlapped with the 2016 mass coral bleaching event on the Great Barrier Reef. We applied licon sequencing of the ITS2 locus to s les of four families (parent colonies and 10-12 eggs per family) to characterize their potential for symbiont shuffling and to determine if shuffled abundances were preserved in gametes. Symbiont cell densities and photochemical efficiencies of the symbionts’ photosystem II differed significantly among adults in 2016, suggesting differential responses to increased temperatures. Although abundances of the dominant symbiont haplotype, a representative of clade C15, did not differ among families or over time, low-abundance (“background”) ITS2 types differed more among years (2015 vs. 2016) than between life stages (parent vs. offspring). Results indicate that background symbiont shuffling can occur in a canonically ‘stable’ symbiosis, and that such plastic changes to the symbiont community are heritable. To our knowledge, this is the first evidence that shuffled Symbiodinium communities can be inherited by early life-history stages and supports the hypothesis that plastic changes in microbial communities may serve as a mechanism of rapid coral acclimation to changing environmental conditions.
Publisher: Springer Science and Business Media LLC
Date: 22-09-2023
Publisher: Cold Spring Harbor Laboratory
Date: 04-11-2021
DOI: 10.1101/2021.11.03.467181
Abstract: Humans have long sought to restore species, but little attention has been directed at how to best select a subset of foundation species for maintaining rich assemblages that support ecosystems, like coral reefs and rainforests that are increasingly threatened by environmental change. We propose a two-part hedging approach that selects optimized sets of species for restoration. The first part acknowledges that bio ersity supports ecosystem functions and services, and so it takes precaution against loss by ensuring an even spread of phenotypic traits. The second part maximizes species and ecosystem persistence by weighting species based on characteristics that are known to improve ecological persistence—e.g., abundance, species range and tolerance to environmental change. Using existing phenotypic trait and ecological characteristic data for reef building corals, we identified sets of ecologically persistent species by examining marginal returns in occupancy of phenotypic trait space. We compared optimal sets of species with those from the world’s southern-most coral reef which naturally harbors low coral ersity to show these occupy much of the trait space. Comparison with an existing coral restoration program indicated that current corals used for restoration only cover part of the desired trait space and may be improved by including species with different traits. Synthesis and applications . While there are many possible criteria for selecting species for restoration, the approach proposed here addresses the need to insure against unpredictable losses of ecosystem services by focusing on a wide range of phenotypic traits and ecological characteristics. Furthermore, the flexibility of the approach enables the functional goals of restoration to vary depending on environmental context, stakeholder values, and the spatial and temporal scales at which meaningful impacts can be achieved.
Publisher: Frontiers Media SA
Date: 15-12-2017
Publisher: Southwestern Association of Naturalists
Date: 03-2010
DOI: 10.1894/TAL-04.1
Publisher: Wiley
Date: 02-07-2023
Abstract: Humans have long sought to restore species but little attention has been directed at how to best select a subset of foundation species for maintaining rich assemblages that support ecosystems, like coral reefs and rainforests, which are increasingly threatened by environmental change. We propose a two‐part hedging approach that selects optimized sets of species for restoration. The first part acknowledges that bio ersity supports ecosystem functions and services, and so it ensures precaution against loss by allocating an even spread of phenotypic traits. The second part maximizes species and ecosystem persistence by weighting species based on characteristics that are known to improve ecological persistence—for ex le abundance, species range and tolerance to environmental change. Using existing phenotypic‐trait and ecological data for reef building corals, we identified sets of ecologically persistent species by examining marginal returns in occupancy of phenotypic trait space. We compared optimal sets of species with those from the world's southern‐most coral reef, which naturally harbours low coral ersity, to show these occupy much of the trait space. Comparison with an existing coral restoration program indicated that current corals used for restoration only cover part of the desired trait space and programs may be improved by including species with different traits. Synthesis and applications . While there are many possible criteria for selecting species for restoration, the approach proposed here addresses the need to insure against unpredictable losses of ecosystem services by focusing on a wide range of phenotypic traits and ecological characteristics. Furthermore, the flexibility of the approach enables the functional goals of restoration to vary depending on environmental context, stakeholder values, and the spatial and temporal scales at which meaningful impacts can be achieved.
Publisher: Springer International Publishing
Date: 2018
Publisher: The Company of Biologists
Date: 2020
DOI: 10.1242/BIO.047316
Abstract: The rate of coral reef degradation from climate change is accelerating and, as a consequence, a number of interventions to increase coral resilience and accelerate recovery are under consideration. Acropora spathulata coral colonies that survived mass bleaching in 2016 and 2017 were sourced from a bleaching-impacted and warmer northern reef on the Great Barrier Reef (GBR). These in iduals were reproductively crossed with colonies collected from a recently bleached but historically cooler central GBR reef to produce pure- and crossbred offspring groups (warm - warm, warm - cool, and cool - warm). We tested whether corals from the warmer reef produced more thermally tolerant hybrid and purebred offspring compared with crosses produced with colonies sourced from the cooler reef and whether different symbiont taxa affect heat tolerance. Juveniles were infected with Symbiodinium tridacnidorum, Cladocopium goreaui, Durusdinium trenchii and survival, bleaching, and growth were assessed at 27.5 and 31°C. The contribution of host genetic background and symbiont identity varied across fitness traits. Offspring with either both or one parent from the northern population exhibited a 13 to 26-fold increase in survival odds relative to all other treatments where survival probability was significantly influenced by familial cross identity at 31°C but not 27.5°C (Kaplan-Meier p=0.001 versus 0.2). If in symbiosis with D. trenchii, a warm sire and cool dam provided the best odds of juvenile survival. Bleaching was predominantly driven by Symbiodiniaceae treatment, where juveniles hosting D. trenchii bleached significantly less than the other treatments at 31°C. The greatest overall fold-benefits in growth and survival at 31°C occurred in having at least one warm dam and in symbiosis with D. trenchii. Juveniles associated with D. trenchii grew the most at 31°C, but at 27.5°C, growth was fastest in juveniles associated with C. goreaui. In conclusion, selective breeding with warmer GBR corals in combination with algal symbiont manipulation can assist in increasing thermal tolerance on cooler but warming reefs. Such interventions have the potential to improve coral fitness in warming oceans.
Publisher: Frontiers Media SA
Date: 26-02-2021
DOI: 10.3389/FMARS.2021.636177
Abstract: Novel restoration methods are currently under consideration worldwide to help coral reefs recover or become more resilient to higher temperature stress. Critical field-based information concerning the paradigm of “local is best” is lacking for many methods information which is essential to determine the risk and feasibility associated with restoration. One method involves breeding corals from different reef regions with expected variation in heat tolerance and moving those offspring to new locations to enhance offspring survival thereby augmenting local stock to enhance survival for anticipated warming. In this study, surviving colonies from the 2016 to 2017 mass bleaching events on the Great Barrier Reef (GBR) were reproductively crossed and they included colonies sourced from northern (three) and central (two) reefs. The gravid colonies of Acropora tenuis were collected across 6° of latitude, and they were spawned to produce a total of 17 purebred and hybrid crosses. Juvenile corals (3,748 in idual colonies settled on 1,474 terracotta tiles) were deployed to Davies reef in the central GBR after 4 months of aquarium rearing. Survival, growth, and coral colour (as a proxy for bleaching) were assessed after 0, 91, and 217 days of field deployment. Overall, a high percentage of juveniles (17% ± 2.5 SE) survived relative to expected survival at the final census. Survival was significantly higher for central purebred crosses, hybrid crosses had intermediate survival while northern purebreds had the lowest survival. Colour and growth rates (0.001−0.006 mm 2 day –1 ) were not significantly different amongst central, northern, or hybrid crosses but were of a reverse pattern compared to survival. On average, northern purebred crosses grew the fastest, followed by hybrid crosses, and then central purebred crosses. Modelled growth trajectories suggest that northern purebreds would take 8 years to grow to reproductive size, hybrids would take nine, and central purebreds would require 12. All deployed juvenile corals paled over time in the field although the colour of A. tenuis juveniles did not differ significantly amongst central, northern, or hybrid crosses. Growth and survival trade-off analysis showed that although most crosses did not outperform the native central juveniles, two of the eight hybrid crosses (SBxLS, DRxCU) demonstrated faster time to reproductive age and increased survival. Overall, reduced time to reach reproductive size and minimal trade-offs in at least two of the eight hybrids suggest that these crosses may accelerate and supplement recovery through natural re-seeding of genes sourced from northern reefs.
Publisher: Public Library of Science (PLoS)
Date: 11-04-2014
Publisher: Springer Science and Business Media LLC
Date: 24-01-2022
DOI: 10.1007/S00338-021-02202-X
Abstract: Maintaining genetic ersity and bio ersity is key to sustaining healthy ecosystems and their capacity for adaptation. Assisted Gene Flow (AGF) is a management approach to translocate adaptive genes among populations to restore faltering and at-risk habitats, especially on coral reefs. Cryopreserved sperm can facilitate AGF via selective breeding at a lower cost and with fewer risks than sourcing colonies from the wild or moving adult corals (translocation) . Here, we present a proof-of-concept study demonstrating that cryopreserved sperm from northern and central Great Barrier Reef (GBR) locations can be used to make intrapopulation and interpopulation crosses to underpin AGF. The results of this study support the importance of assessing the concentration of motile sperm in post-thaw s les, with a minimum of approximately 30,000 motile cryopreserved sperm per egg required to achieve fertilisation. Mean per cent motility values post-collection and without artificial activation (northern colonies 14 ± 3.2% central colonies 19 ± 3.6%) were considerably lower than previous observations of sperm from Acropora tenuis on the Great Barrier Reef, and may represent a lag effect from recent ocean warming events at the level of coral populations. Coral reefs with relatively high species and genetic ersity and coral cover are good places to preserve bio ersity through cryopreservation. Such cryo-collections build a genetic resource to optimise strategies available to reef managers to support natural recovery rates and reef restoration and adaptation efforts.
Publisher: Springer Science and Business Media LLC
Date: 28-06-2021
Publisher: Cold Spring Harbor Laboratory
Date: 16-01-2017
DOI: 10.1101/100453
Abstract: The dinoflagellate-coral partnership influences the coral holobiont’s tolerance to thermal stress and bleaching. However, the comparative roles of host genetic versus environmental factors in determining the composition of this symbiosis are largely unknown. Here we quantify the heritability of the initial Symbiodinium communities for two broadcast-spawning corals with different symbiont transmission modes: Acropora tenuis has environmental acquisition, whereas Montipora digitata has maternal transmission. Using high throughput sequencing of the ITS-2 region to characterize communities in parents, juveniles and eggs, we describe previously undocumented Symbiodinium ersity and dynamics in both corals. After one month of uptake in the field, Symbiodinium communities associated with A. tenuis juveniles were dominated by A3, C1, D1, A-type CCMP828, and D1a in proportional abundances conserved between experiments in two years. M. digitata eggs were predominantly characterized by C15, D1, and A3. In contrast to current paradigms, host genetic influences accounted for a surprising 29% of phenotypic variation in Symbiodinium communities in the horizontally-transmitting A. tenuis , but only 62% in the vertically-transmitting M. digitata . Our results reveal hitherto unknown flexibility in the acquisition of Symbiodinium communities and substantial heritability in both species, providing material for selection to produce partnerships that are locally adapted to changing environmental conditions.
Publisher: Springer Science and Business Media LLC
Date: 03-08-2022
DOI: 10.1038/S41467-022-32217-Z
Abstract: Predicting how reef-building corals will respond to accelerating ocean warming caused by climate change requires knowledge of how acclimation and symbiosis modulate heat tolerance in coral early life-history stages. We assayed transcriptional responses to heat in larvae and juveniles of 11 reproductive crosses of Acropora tenuis colonies along the Great Barrier Reef. Larvae produced from the warmest reef had the highest heat tolerance, although gene expression responses to heat were largely conserved by cross identity. Juvenile transcriptional responses were driven strongly by symbiosis – when in symbiosis with heat-evolved Symbiodiniaceae, hosts displayed intermediate expression between its progenitor Cladocopium and the more stress tolerant Durusdinium , indicating the acquisition of tolerance is a conserved evolutionary process in symbionts. Heat-evolved Symbiodiniaceae facilitated juvenile survival under heat stress, although host transcriptional responses to heat were positively correlated among those hosting different genera of Symbiodiniaceae. These findings reveal the relative contribution of parental environmental history as well as symbiosis establishment in coral molecular responses to heat in early life-history stages.
Publisher: Wiley
Date: 31-10-2020
DOI: 10.1002/MBO3.959
Publisher: Springer Science and Business Media LLC
Date: 17-02-2018
Publisher: The Royal Society
Date: 10-2016
DOI: 10.1098/RSOS.160471
Abstract: Coral endosymbionts in the dinoflagellate genus Symbiodinium are known to impact host physiology and have led to the evolution of reef-building, but less is known about how symbiotic communities in early life-history stages and their interactions with host parental identity shape the structure of coral communities on reefs. Differentiating the roles of environmental and biological factors driving variation in population demographic processes, particularly larval settlement, early juvenile survival and the onset of symbiosis is key to understanding how coral communities are structured and to predicting how they are likely to respond to climate change. We show that maternal effects (that here include genetic and/or effects related to the maternal environment) can explain nearly 24% of variation in larval settlement success and 5–17% of variation in juvenile survival in an experimental study of the reef-building scleractinian coral, Acropora tenuis . After 25 days on the reef, Symbiodinium communities associated with juvenile corals differed significantly between high mortality and low mortality families based on estimates of taxonomic richness, composition and relative abundance of taxa. Our results highlight that maternal and familial effects significantly explain variation in juvenile survival and symbiont communities in a broadcast-spawning coral, with Symbiodinium type A3 possibly a critical symbiotic partner during this early life stage.
Publisher: Frontiers Media SA
Date: 16-09-2022
DOI: 10.3389/FMARS.2022.960470
Abstract: Active restoration or intervention programs will be required in the future to support the resilience and adaptation of coral reef ecosystems in the face of climate change. Selective propagation of corals ex situ can help conserve keystone species and the ecosystems they underpin cross-disciplinary research and communication between science and industry are essential to this success. Zoos and aquaria have a long history of managing ex situ breed-for-release programs and have led the establishment of wildlife biobanks (collections of cryopreserved living cells) along with the development of associated reproductive technologies for their application to wildlife conservation. Taronga Conservation Society Australia’s CryoDiversity Bank includes cryopreserved coral sperm from the Great Barrier Reef, which represents the largest repository from any reef system around the globe. This paper presents results from an inventory review of the current collection. The review highlighted the skew toward five Acropora species and the necessity to increase the taxonomic ersity of the collection. It also highlighted the need to increase geographic representation, even for the most well represented species. The inventory data will inform Taronga’s future research focus and s ling strategy to maximize genetic variation and bio ersity within the biobank and provide a test case for other practitioners implementing biobanking strategies for coral conservation around the world. Through co-investment and collaboration with research partners over the next decade, Taronga will prioritize and resource critical applied research and expand biobanking efforts to assist interventions for reef recovery and restoration.
Publisher: Elsevier BV
Date: 08-2019
DOI: 10.1016/J.TIM.2019.03.004
Abstract: Coral reefs rely upon the highly optimized coral-Symbiodiniaceae symbiosis, making them sensitive to environmental change and susceptible to anthropogenic stress. Coral bleaching is predominantly attributed to photo-oxidative stress, yet nutrient availability and metabolism underpin the stability of symbioses. Recent studies link symbiont proliferation under nutrient enrichment to bleaching however, the interactions between nutrients and symbiotic stability are nuanced. Here, we demonstrate how bleaching is regulated by the forms and ratios of available nutrients and their impacts on autotrophic carbon metabolism, rather than algal symbiont growth. By extension, historical nutrient conditions mediate host-symbiont compatibility and bleaching tolerance over proximate and evolutionary timescales. Renewed investigations into the coral nutrient metabolism will be required to truly elucidate the cellular mechanisms leading to coral bleaching.
Publisher: American Association for the Advancement of Science (AAAS)
Date: 09-12-2022
Abstract: Survival of symbiotic reef-building corals under global warming requires rapid acclimation or adaptation. The impact of accumulated heat stress was compared across 1643 symbiont communities before and after the 2016 mass bleaching in three coral species and free-living in the environment across ~900 kilometers of the Great Barrier Reef. Resilient reefs (less aerial bleaching than predicted from high satellite sea temperatures) showed low variation in symbioses. Before 2016, heat-tolerant environmental symbionts were common in ~98% of s les and moderately abundant (9 to 40% in s les). In corals, heat-tolerant symbionts were at low abundances (0 to 7.3%) but only in a minority (13 to 27%) of colonies. Following bleaching, environmental ersity doubled (including heat-tolerant symbionts) and increased in one coral species. Communities were dynamic ( Acropora millepora ) and conserved ( Acropora hyacinthus and Acropora tenuis ), including symbiont community turnover and redistribution. Symbiotic restructuring after bleaching occurs but is a taxon-specific ecological opportunity.
Publisher: MDPI AG
Date: 11-08-2021
DOI: 10.3390/RS13163173
Abstract: As coral reefs continue to degrade globally due to climate change, considerable effort and investment is being put into coral restoration. The production of coral offspring via asexual and sexual reproduction are some of the proposed tools for restoring coral populations and will need to be delivered at scale. Simple, inexpensive, and high-throughput methods are therefore needed for rapid analysis of thousands of coral offspring. Here we develop a machine learning pipeline to rapidly and accurately measure three key indicators of coral juvenile fitness: survival, size, and color. Using machine learning, we classify pixels through an open-source, user-friendly interface to quickly identify and measure coral juveniles on two substrates (field deployed terracotta tiles and experimental, laboratory PVC plastic slides). The method’s ease of use and ability to be trained quickly and accurately using small training sets make it suitable for application with images of species of sexually produced corals without existing datasets. Our results show higher accuracy of survival for slides (94.6% accuracy with five training images) compared to field tiles measured over multiple months (March: 77.5%, June: 91.3%, October: 97.9% accuracy with 100 training images). When using fewer training images, accuracy of area measurements was also higher on slides (7.7% average size difference) compared to tiles (24.2% average size difference for October images). The pipeline was 36× faster than manual measurements. The slide images required fewer training images compared to tiles and we provided cut-off guidelines for training for both substrates. These results highlight the importance and power of incorporating high-throughput methods, substrate choice, image quality, and number of training images for measurement accuracy. This study demonstrates the utility of machine learning tools for scalable ecological studies and conservation practices to facilitate rapid management decisions for reef protection.
Publisher: Springer Science and Business Media LLC
Date: 12-10-2021
Publisher: Frontiers Media SA
Date: 03-08-2021
DOI: 10.3389/FMARS.2021.701784
Abstract: Coral research is being ushered into the genomic era. To fully capitalize on the potential discoveries from this genomic revolution, the rapidly increasing number of high-quality genomes requires effective pairing with rigorous taxonomic characterizations of specimens and the contextualization of their ecological relevance. However, to date there is no formal framework that genomicists, taxonomists, and coral scientists can collectively use to systematically acquire and link these data. Spurred by the recently announced “Coral symbiosis sensitivity to environmental change hub” under the “Aquatic Symbiosis Genomics Project” - a collaboration between the Wellcome Sanger Institute and the Gordon and Betty Moore Foundation to generate gold-standard genome sequences for coral animal hosts and their associated Symbiodiniaceae microalgae (among the sequencing of many other symbiotic aquatic species) - we outline consensus guidelines to reconcile different types of data. The metaorganism nature of the coral holobiont provides a particular challenge in this context and is a key factor to consider for developing a framework to consolidate genomic, taxonomic, and ecological (meta)data. Ideally, genomic data should be accompanied by taxonomic references, i.e., skeletal vouchers as formal morphological references for corals and strain specimens in the case of microalgal and bacterial symbionts (cultured isolates). However, exhaustive taxonomic characterization of all coral holobiont member species is currently not feasible simply because we do not have a comprehensive understanding of all the organisms that constitute the coral holobiont. Nevertheless, guidelines on minimal, recommended, and ideal-case descriptions for the major coral holobiont constituents (coral animal, Symbiodiniaceae microalgae, and prokaryotes) will undoubtedly help in future referencing and will facilitate comparative studies. We hope that the guidelines outlined here, which we will adhere to as part of the Aquatic Symbiosis Genomics Project sub-hub focused on coral symbioses, will be useful to a broader community and their implementation will facilitate cross- and meta-data comparisons and analyses.
Start Date: 08-2023
End Date: 07-2029
Amount: $438,547.00
Funder: Australian Research Council
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