ORCID Profile
0000-0002-5044-0720
Current Organisations
Macquarie University
,
University of California Davis
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Publisher: Springer Science and Business Media LLC
Date: 27-02-2019
DOI: 10.1186/S13068-019-1381-3
Abstract: Many microbes used for the rapid discovery and development of metabolic pathways have sensitivities to final products and process reagents. Isopentenol (3-methyl-3-buten-1-ol), a biogasoline candidate, has an established heterologous gene pathway but is toxic to several microbial hosts. Reagents used in the pretreatment of plant biomass, such as ionic liquids, also inhibit growth of many host strains. We explored the use of Corynebacterium glutamicum as an alternative host to address these constraints. We found C. glutamicum ATCC 13032 to be tolerant to both the final product, isopentenol, as well to three classes of ionic liquids. A heterologous mevalonate-based isopentenol pathway was engineered in C. glutamicum . Targeted proteomics for the heterologous pathway proteins indicated that the 3-hydroxy-3-methylglutaryl-coenzyme A reductase protein, HmgR, is a potential rate-limiting enzyme in this synthetic pathway. Isopentenol titers were improved from undetectable to 1.25 g/L by combining three approaches: media optimization substitution of an NADH-dependent HmgR homolog from Silicibacter pomeroyi and development of a C. glutamicum ∆poxB ∆ldhA host chassis. We describe the successful expression of a heterologous mevalonate-based pathway in the Gram-positive industrial microorganism, C. glutamicum, for the production of the biogasoline candidate, isopentenol. We identified critical genetic factors to harness the isopentenol pathway in C. glutamicum . Further media and cultivation optimization enabled isopentenol production from sorghum biomass hydrolysates.
Publisher: Elsevier BV
Date: 12-2022
Publisher: Frontiers Media SA
Date: 18-11-2021
DOI: 10.3389/FBIOE.2021.766674
Abstract: Corynebacterium glutamicum is an ideal microbial chassis for production of valuable bioproducts including amino acids and next generation biofuels. Here we resequence engineered isopentenol (IP) producing C. glutamicum BRC-JBEI 1.1.2 strain and assess differential transcriptional profiles using RNA sequencing under industrially relevant conditions including scale transition and compare the presence vs absence of an ionic liquid, cholinium lysinate ([Ch][Lys]). Analysis of the scale transition from shake flask to bioreactor with transcriptomics identified a distinct pattern of metabolic and regulatory responses needed for growth in this industrial format. These differential changes in gene expression corroborate altered accumulation of organic acids and bioproducts, including succinate, acetate, and acetoin that occur when cells are grown in the presence of 50 mM [Ch][Lys] in the stirred-tank reactor. This new genome assembly and differential expression analysis of cells grown in a stirred tank bioreactor clarify the cell response of an C. glutamicum strain engineered to produce IP.
Publisher: S. Karger AG
Date: 2022
DOI: 10.1159/000522660
Abstract: The global health burden presented by hypertension is providing increased motivation for improved means of collection of blood pressure (BP) data. A growing area of research and commercial activity is the use of wearable devices to provide BP data using non-invasive cuffless techniques. The accelerated progress in recent years, particularly relating to connectivity of smartphone technology, has promoted the availability of consumer devices that provide values of BP. The main types of devices are wrist-worn, watch-type devices with sensors that typically record a photoplethysmography (PPG) signal, sometimes also with an electrocardiography (ECG) signal. The general underlying concept of the cuffless BP measurement in most device types is the association of BP and the travel time of the arterial pulse between two locations, determined from the time delay between the ECG and PPG signals. Other methods may involve additional analysis of the PPG waveform features. Experimental data are presented to illustrate the challenges presented by cuffless BP techniques in obtaining reliable BP measurements when the change in BP is caused by different stimuli affecting cardiac and vascular mechanisms. These effects influence the association of the measured and physiological BP change, thus presenting significant challenges and potential limitations in the use of cuffless BP devices for the diagnosis and treatment of hypertension.
Publisher: IEEE
Date: 11-2021
Publisher: Cold Spring Harbor Laboratory
Date: 10-2021
DOI: 10.1101/2021.09.29.462453
Abstract: Corynebacterium glutamicum is an ideal microbial chassis for the production of valuable bioproducts including amino acids and next-generation biofuels. Here we resequence engineered isopentenol (IP) producing C. glutamicum BRC-JBEI 1.1.2 strain and assess differential transcriptional profiles using RNA sequencing under industrially relevant conditions including scale transition and compare the presence vs . absence of an ionic liquid, cholinium lysinate ([Ch][Lys]). Analysis of the scale transition from shake flask to bioreactor with transcriptomics identified a distinct pattern of metabolic and regulatory responses needed for growth in this industrial format. These differential changes in gene expression corroborate altered accumulation of organic acids and bioproducts, including succinate, acetate, and acetoin that occur when cells are grown in the presence of 50mM [Ch][Lys] in the stirred-tank reactor. This new genome assembly and differential expression analysis of cells grown in a stirred tank bioreactor clarify the cell response of a C. glutamicum strain engineered to produce IP.
No related grants have been discovered for Jessica Trinh.