ORCID Profile
0000-0002-0289-7101
Current Organisation
National Institutes of Health
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Publisher: Springer Science and Business Media LLC
Date: 23-02-2022
Publisher: Springer Science and Business Media LLC
Date: 05-2008
DOI: 10.1038/NBT1360
Publisher: Springer Science and Business Media LLC
Date: 19-06-2020
Publisher: Oxford University Press (OUP)
Date: 04-01-2011
Publisher: Springer Science and Business Media LLC
Date: 08-2017
DOI: 10.1038/NBT.3893
Abstract: We present two standards developed by the Genomic Standards Consortium (GSC) for reporting bacterial and archaeal genome sequences. Both are extensions of the Minimum Information about Any (x) Sequence (MIxS). The standards are the Minimum Information about a Single Amplified Genome (MISAG) and the Minimum Information about a Metagenome-Assembled Genome (MIMAG), including, but not limited to, assembly quality, and estimates of genome completeness and contamination. These standards can be used in combination with other GSC checklists, including the Minimum Information about a Genome Sequence (MIGS), Minimum Information about a Metagenomic Sequence (MIMS), and Minimum Information about a Marker Gene Sequence (MIMARKS). Community-wide adoption of MISAG and MIMAG will facilitate more robust comparative genomic analyses of bacterial and archaeal ersity.
Publisher: Springer Science and Business Media LLC
Date: 17-12-2019
DOI: 10.1038/NBT.4306
Publisher: Springer Science and Business Media LLC
Date: 07-2023
Publisher: Oxford University Press (OUP)
Date: 18-11-2010
DOI: 10.1093/NAR/GKQ1173
Publisher: Springer Science and Business Media LLC
Date: 22-08-2023
Publisher: Oxford University Press (OUP)
Date: 2022
DOI: 10.1093/GIGASCIENCE/GIAC003
Abstract: The Public Health Alliance for Genomic Epidemiology (PHA4GE) (pha4ge.org) is a global coalition that is actively working to establish consensus standards, document and share best practices, improve the availability of critical bioinformatics tools and resources, and advocate for greater openness, interoperability, accessibility, and reproducibility in public health microbial bioinformatics. In the face of the current pandemic, PHA4GE has identified a need for a fit-for-purpose, open-source SARS-CoV-2 contextual data standard. As such, we have developed a SARS-CoV-2 contextual data specification package based on harmonizable, publicly available community standards. The specification can be implemented via a collection template, as well as an array of protocols and tools to support both the harmonization and submission of sequence data and contextual information to public biorepositories. Well-structured, rich contextual data add value, promote reuse, and enable aggregation and integration of disparate datasets. Adoption of the proposed standard and practices will better enable interoperability between datasets and systems, improve the consistency and utility of generated data, and ultimately facilitate novel insights and discoveries in SARS-CoV-2 and COVID-19. The package is now supported by the NCBI’s BioS le database.
Location: United States of America
Location: No location found
No related grants have been discovered for Ilene Karsch Mizrachi.