ORCID Profile
0000-0003-2231-816X
Current Organisation
University of Adelaide
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Publisher: Elsevier BV
Date: 11-1973
Publisher: Springer Science and Business Media LLC
Date: 1986
DOI: 10.1071/APP9860074
Publisher: Springer Science and Business Media LLC
Date: 04-09-2013
Publisher: Wiley
Date: 13-01-2009
Publisher: Elsevier BV
Date: 04-1983
DOI: 10.1016/S0042-6822(83)80006-3
Abstract: Two species of double-stranded (ds) RNA were detected in Nicotiana clevelandii infected with velvet tobacco mottle virus (VTMoV) which were not present in healthy plants. The ds-RNAs were first detected by polyacrylamide gel electrophoresis 2 to 4 and about 8 days after inoculation in the inoculated and systemically infected leaves respectively. Thereafter the concentrations of ds-RNA increased significantly. The VTMoV-specific ds-RNA was purified from plants 10 to 14 days after inoculation. The ds-RNA was electrophoresed on agarose gels, transferred to nitrocellulose paper and blot hybridized with 32P-labelled probes specific to nucleotide sequences of either the positive or negative sense strands of the various VTMoV RNA components: the linear single-stranded (ss) RNA 1 of Mr about 1.5 x 10(6) or RNAs 2 and 3, the circular and linear forms respectively, of viroid-like ss-RNA with Mr of about 1.2 x 10(5). One of the ds-RNA species, with Mr of about 2.8 x 10(6), was shown to contain base sequences specific to RNA 1 and the other, with Mr of about 3.6 x 10(6), specific to RNAs 2 and 3. The possible significance of the VTMoV-specific ds-RNAs to replication of the virus is discussed.
Publisher: Elsevier BV
Date: 04-1981
DOI: 10.1016/0042-6822(81)90074-X
Abstract: 3H-labelled complementary DNA (cDNA) was reverse transcribed from the RNA of three biologically distinct isolates of bean yellow mosaic virus (BYMV-G, Q, and S) by the random primer method of Taylor et al. [Biochim. Biophys. Acta 442, 324-330 (1976)]. Excess virus RNA was hybridized with each of the cDNAs and percentage hybrid formation was assayed using the single-strand-specific nuclease S1, The R0t (1/2) values obtained for the homologous hybridization reactions (1.2 x 10(-2) mol sec liter(-1)) showed that all three BYMV-RNAs were unique species, without detectable zones of reiteration. Reciprocal hybridizations between isolates G, Q, and S have shown that each was significantly different from the other. A comparison of these three isolates with a selection of other potyviruses showed that the relationship between them was closer than that observed between any of them and the other potyviruses tested.
Publisher: Springer Science and Business Media LLC
Date: 03-1998
Abstract: Digital and smart sensors are commonly implemented using multi-bit ΣΔ Modulators. Undesired signals can be present at the ADC input, such as low-frequency signals with medium or high litude, as a consequence of mechanical artifacts in the MEMS and/or temporary signal overload. Simulations and measurements of those sensors with such signals show temporary increments of in-band noise power. This paper investigates the factors that produce this transient performance loss. Interestingly, noise increments happen when the modulator is forced to toggle between three adjacent levels and is not correlated with the typical tonal behavior of ΣΔ Modulators. Hence, the sensor performance is sensitive to some specific input patterns even if tonal behavior is decreased by dithering the input of the ADC. Different error sources, such as the mismatch between DAC cells, loop filter linearity error, and quantization error, contribute to the observed noise increments. Our aim is to analyze each of these error sources to understand and quantify in-band noise power increments, and to desensitize the ADC from the undesired input patterns. Some estimation equations are proposed and verified through extensive simulations, by means of deterministic and stochastic methods. These equations are influenced by some modulator parameters and can be used to optimize them in order to reduce such in-band noise power increments.
Publisher: Springer Science and Business Media LLC
Date: 02-1995
DOI: 10.1007/BF00019328
Publisher: Wiley
Date: 12-03-2007
Publisher: CSIRO Publishing
Date: 1971
DOI: 10.1071/AR9710231
Abstract: A survey has shown that both lettuce necrotic yellows virus (LNYV) and its vector Hyperomyzus lactucae are commonly associated with the widely distributed host plant, Sonchus oleraceus. Three newly discovered naturally infected host plant species, Reichardia tingitana, Sonchus hydrophilus, and Embergeria megalocarpa, have a restricted distribution, yet their ability to support colonies of the vector shows that they are potential sources of LNYV. Both S. hydrophilus and E. megalocarpa appear to be endemic to Australasia, and the possibility that either could be the original source of LNYV is discussed. Serological relationships have been demonstrated between some isolates of LNYV. A simple and rapid method for concentrating LNYV from sap extracts for serological testing is described. Hyperomyzus carduellinus has been shown to transmit LNYV, and the distinguishing morphological characteristics of this species are described. Its geographical distribution is limited, and it was found most commonly on R. tingitana.
Publisher: Elsevier BV
Date: 09-2008
DOI: 10.1016/J.VIRUSRES.2008.04.011
Abstract: Tomato leaf curl virus (TLCV) satellite DNA (sat-DNA) constructs containing functional segments of the cauliflower mosaic virus (CaMV) 35S promoter, replicate in tobacco in the presence of helper TLCV and silence GUS activity in transgenic tobacco plants containing a CaMV 35S-GUS expression cassette. We have analysed these plants for evidence of the hallmarks of silencing. The GUS transcript was not detectable in the leaves of GUS-silenced tobacco plants. These plants contained siRNAs of approximately 23 nt in length homologous to both the 35S promoter region and the GUS ORF. The absence of GUS expression and the existence of siRNAs in transgenic plants show that the silencing induced by TLCV sat-DNA is due to RNA silencing. To test the utility of this silencing system, a 341 nucleotide promoter sequence of the petunia chalcone synthase A (ChsA) was inserted into the sat-DNA and inoculated into petunia plants, together with the helper TLCV, and found to markedly reduce pigmentation of flowers and the level of ChsA transcript. This DNA-based silencing system has the potential to introduce epigenetic traits via short DNA inserts to a variety of plants that are hosts to different geminiviruses supporting the sat-DNA.
Publisher: Wiley
Date: 04-1994
Publisher: Wiley
Date: 03-1983
Publisher: Springer Science and Business Media LLC
Date: 12-03-2008
Publisher: Oxford University Press (OUP)
Date: 17-12-2004
Publisher: Springer Science and Business Media LLC
Date: 28-05-2012
Publisher: Microbiology Society
Date: 10-2007
Abstract: DNA β is a circular single-stranded satellite DNA which co-infects with certain monopartite helper begomoviruses to cause economically important diseases, such as cotton leaf curl disease (CLCuD). DNA β encodes a single protein, β C1. Tomato leaf curl New Delhi virus (ToLCNDV) is a bipartite begomovirus in which both DNA A and DNA B are required for systemic infection. Inoculation of tomato plants with ToLCNDV DNA A alone induced local but not systemic infection, whereas co-inoculation with DNA A and the DNA β associated with CLCuD resulted in systemic infection. DNA β containing a disrupted β C1 open reading frame (ORF) did not mobilize DNA A systemically. Co-inoculation of plants with DNA A and a construct of the β C1 ORF, under the control of the cauliflower mosaic virus 35S promoter, resulted in the systemic movement of DNA A. In inoculated tobacco and onion epidermal cells, β C1 fused to GFP was localized at the cell periphery in association with punctate bodies, around and within the cell nucleus and with the endoplasmic reticulum. It is concluded that heterologous β C1 protein can replace the movement function of the DNA B of a bipartite begomovirus. Evidence is also provided that tomato leaf curl virus-encoded C4 protein confers the same movement function to ToLCNDV DNA A. The intracellular distribution of β C1 is consistent with the hypothesis that it has a role in transporting the DNA A from the nuclear site of replication to the plasmodesmatal exit sites of the infected cell.
Publisher: Springer Science and Business Media LLC
Date: 1977
DOI: 10.1071/APP9770037
Publisher: Springer Science and Business Media LLC
Date: 17-06-2009
DOI: 10.1007/S11103-009-9506-X
Abstract: Tomato leaf curl virus-Australia (ToLCV) C4 protein has been shown to be associated with virus pathogenesis. Here, we demonstrate that C4 acts as a suppressor of gene silencing. To understand the multifunctional role of C4, a novel shaggy-like kinase (SlSK) from tomato, which interacts with ToLCV C4 in a yeast two-hybrid assay, was isolated and interaction between these proteins was confirmed in vitro and in planta. Using deletion analysis of C4, a 12 amino acid region in the C-terminal part of C4 was identified which was shown to be essential for its binding to SlSK. We further demonstrate that this region is not only important for the interaction of C4 with SlSK, but is also required for C4 function to suppress gene silencing activity and to induce virus symptoms in a PVX system. The potential significance of ToLCV C4 and SlSK interaction is discussed.
Publisher: Microbiology Society
Date: 2009
Abstract: DNA beta is a circular single-stranded satellite DNA associated with certain monopartite begomoviruses (family Geminiviridae) which causes economically important diseases such as cotton leaf curl disease. DNA beta contains a single gene, betaC1, which encodes a pathogenicity protein responsible for symptom production. Transient expression studies in Nicotiana tabacum using the beta-glucuronidase reporter gene driven by a betaC1 promoter-deletion series of the DNA beta associated with cotton leaf curl Multan virus identified a 68 nt region (between -139 and -207) which is important for betaC1 transcription. This 68 nt region contains a G-box (CACGTG) located 143 nt upstream of the betaC1 start codon. Mutation of the G-box resulted in a significant reduction in betaC1 promoter activity and DNA beta replication efficiency. In addition, the G-box motif was found to bind specifically to a protein(s) in nuclear extracts prepared from tobacco leaf tissues. Our results indicate that interaction of the G-box motif with host nuclear factors is important for efficient gene expression and replication of DNA beta.
Publisher: Springer Science and Business Media LLC
Date: 10-02-2006
DOI: 10.1007/S00705-005-0710-Y
Abstract: Variants of Coconut cadang-cadang viroid have been identified in a plantation oil palm growing in Malaysia. Three size classes are described, comprising 297, 293, and 270 nt. Compared with the 296-nt form of coconut cadang-cadang viroid (CCCVd), all variants substituted C31 --> U in the pathogenicity domain and A175 --> C in the right-hand terminus. Other mutations and deletions accounted for the different sizes. These are the first sequences reported for variants of Coconut cadang-cadang viroid in a species other than coconut palm, and this is the first evidence that variants closely related to CCCVd occur outside the Philippines.
Publisher: Oxford University Press (OUP)
Date: 1993
Publisher: Elsevier BV
Date: 02-1972
DOI: 10.1016/0042-6822(72)90262-0
Abstract: Type 1 diabetes is an autoimmune disease with a strong inflammatory component. The cytokines interleukin-1β and interferon-γ contribute to beta cell apoptosis in type 1 diabetes. These cytokines induce endoplasmic reticulum stress and the unfolded protein response (UPR), contributing to the loss of beta cells. IRE1α, one of the UPR mediators, triggers insulin degradation and inflammation in beta cells and is critical for the transition from "physiological" to "pathological" UPR. The mechanisms regulating inositol-requiring protein 1α (IRE1α) activation and its signaling for beta cell "adaptation," "stress response," or "apoptosis" remain to be clarified. To address these questions, we combined mammalian protein-protein interaction trap-based IRE1α interactome and functional genomic analysis of human and rodent beta cells exposed to pro-inflammatory cytokines to identify novel cytokine-induced regulators of IRE1α. Based on this approach, we identified N-Myc interactor (NMI) as an IRE1α-interacting/modulator protein in rodent and human pancreatic beta cells. An increased expression of NMI was detected in islets from nonobese diabetic mice with insulitis and in rodent or human beta cells exposed in vitro to the pro-inflammatory cytokines interleukin-1β and interferon-γ. Detailed mechanistic studies demonstrated that NMI negatively modulates IRE1α-dependent activation of JNK and apoptosis in rodent and human pancreatic beta cells. In conclusion, by using a combined omics approach, we identified NMI induction as a novel negative feedback mechanism that decreases IRE1α-dependent activation of JNK and apoptosis in cytokine-exposed beta cells
Publisher: S. Karger AG
Date: 1981
DOI: 10.1159/000149260
Abstract: Molecular hybridization analysis (MHA) was used to show that several tobamoviruses isolated in China (namely Populus bushy top virus, Dihuang degeneration virus, common tobacco mosaic virus, tomato mosaic virus and a mutant of tomato mosaic) are closely related to the U1 strain of tobacco mosaic virus (TMV-U1). Youcai mosaic virus from rape is a distinct virus unrelated by MHA to the TMV-U1 group or to several other definitive representatives of the tobamoviruses.
Publisher: Springer Science and Business Media LLC
Date: 08-2001
Abstract: Sugarcane striate mosaic associated virus (SCSMaV) has slightly flexuous 950 nm x 15 nm filamentous particles and is associated with sugarcane striate mosaic disease in central Queensland, Australia. We report the full sequence of its RNA genome, which comprises 5 open reading frames representing the polymerase, movement function proteins encoded in a triple gene block and coat protein. Phylogenetic analyses based on either the full nucleotide sequence, the polymerase protein, or the coat protein all placed SCSMaV in an intermediate position between the genera Foveavirus and Carlavirus, but outside both genera. In addition, the absence of a sixth open reading frame excludes it from the genus Carlavirus, and the coat protein is approximately half the size of the type member for the genus Foveavirus. Although SCSMaV was most closely allied to Cherry green ring mottle virus by genome analysis, the two viruses are morphologically and biologically dissimilar. SCSMaV may therefore represent a new plant virus taxon.
Publisher: Elsevier BV
Date: 04-1966
Publisher: Scientific Societies
Date: 05-2007
Abstract: The molecular ersity of 14 isolates of Pea seed-borne mosaic virus (PSbMV) from southern Australia, 13 previously described isolates from Pakistan, and a reference isolate from the United States have been studied to determine whether a relatively simple molecular diagnostic assay and classification scheme could be developed for this virus. The Australian isolates were placed into either pathotype P1 or pathotype P4 by bioassay on differential genotypes of Pisum sativum. The Pakistani isolates represented pathotypes P1, P4, U1, and U2, and an undetermined pathotype. The reference US isolate was pathotype P1. A reverse transcription-polymerase chain reaction (RT-PCR) assay based on an licon from the variable HC-Pro coding region of potyviruses was shown to distinguish PSbMV from seven other legume infecting potyviruses. Restriction fragment length polymorphisms (RFLPs) generated from the HC-Pro RT-PCR products of all 28 isolates using seven restriction endonucleases placed them into eight groups. A phylogenetic tree based on a Bray-Curtis similarity comparison placed the groups into three clusters. The groups and clusters had no clear association with either pathotype or geographic source. It is concluded that within the range of viruses and isolates tested, the RT-PCR-RFLP method will both specifically identify PSbMV and provide a simple, qualitative, and rapid means for placing PSbMV isolates into groups. Applications could include mapping and tracking isolates in space and time.
Publisher: Microbiology Society
Date: 08-1990
DOI: 10.1099/0022-1317-71-8-1873
Abstract: A circular, viroid-like satellite RNA (sat RNA) was detected in lucerne transient streak virus (LTSV), from lucerne in South Australia. It was larger than the previously reported sat RNA of LTSV, being similar in size and sequence homology to the 388 nucleotide sat RNA previously shown to be encapsidated by subterranean clover mottle virus (SCMoV) isolated from subterranean clover in Western Australia. This indicates that under field conditions, very similar sat RNAs can be associated with two distantly related sobemoviruses, LTSV and SCMoV. The natural hosts of these viruses are lucerne and subterranean clover, respectively.
Publisher: Wiley
Date: 06-1990
Publisher: CSIRO Publishing
Date: 1985
DOI: 10.1071/AR9850267
Abstract: Many Lupinus angustifolius crops in South Australia showed a high incidence of severe stunting and leaf epinasty during 1983. The epidemic was attributed to infection with cucumber mosaic virus. The virus was also recovered from Trifolium subterraneum cv. Geraldton, Medicago polymorpha, Vicia faba, Erodium sp. and Arctotheca calendula growing in or adjacent to lupin crops. The experimental host range of the virus included T. subterraneum cv. Clare, T. repens, Pisurn sativum, Vicia faba and Cicer arietinum. A seed transmission rate of 12-15% was demonstrated in field-infected lupins, and it is concluded that the epidemic probably arose through primary introduction of virus into crops in seed, followed by secondary spread by aphids. The possible role of alternative host species as a reservoir is discussed.
Publisher: Springer Science and Business Media LLC
Date: 15-09-2012
DOI: 10.1007/S11262-012-0801-2
Abstract: Genomic mutation in plant viruses of cultivated plants is known to be influenced by virus, host and vector, but the factors influencing mutation in viruses of native plants in natural ecosystems are rarely studied. We have tested the effect of mode of transmission on mutation in Velvet tobacco mottle virus (VTMoV), a mirid-vectored sobemovirus associated with Nicotiana velutina, an Australian native xerophyte growing in a region isolated from anthropogenic influences. Two variants of VTMoV (K1 and R17) were passaged monthly in the alternative experimental plant host, N. clevelandii, for 2 years, either by mechanical inoculation or by transmission with the mirid Cyrtopeltis nicotianae. Sequence variations were scored after 24 passages in regions of the genome containing the open reading frames (ORFs) for the P1 and coat protein (CP). The mean mutation rate was 6.83 × 10(-4) nt/site year, but a higher overall rate was observed for the K1 (satellite -) than the R17 (satellite +) variant. The P1 ORF showed a higher frequency of non-synonymous mutations than the CP. No clear association was found between either mutation site or mutation rate and the mode of transmission, indicating that obligatory mirid transmission had not exerted a specific bottle-neck effect on sequence variation during the experimental time frame. Failure to detect any sequence motifs linked to vector transmission suggests that a specific capsid-stylet interaction is not required for transmission by mirids.
Publisher: Springer Science and Business Media LLC
Date: 05-2006
DOI: 10.1007/S11103-006-0028-5
Abstract: Monopartite geminiviruses of the genus Begomovirus have two virion-sense genes, V1 and V2. V2 encodes the viral coat protein, but the function of V1 is largely unknown, although some studies suggest that it may play a role in cell-to-cell movement. Yeast two-hybrid technology was used to identify possible host binding partners of V1 from Tomato leaf curl virus (TLCV) to better understand its function. A protein closely related to a family of plant reversibly glycosylated peptides, designated SlUPTG1, was found to interact with V1 in yeast and in vitro. SlUPTG1 may function endogenously in the synthesis of cell wall polysaccharides, since a bacterially expressed form of the protein acted as an autocatalytic glycosyltransferase in vitro, a SlUPTG1:GFP fusion protein localized to the cell wall, and expression of SlUPTG1 appeared to be highest in actively iding tissues. However, expression of SlUPTG1 in a transient TLCV replication assay increased the accumulation of viral DNA, suggesting that this host factor also plays a role in viral infection. Together, these data provide new insight into the role of V1 in TLCV infection and reveal another host pathway which geminiviruses may manipulate to achieve an efficient infection.
Publisher: Elsevier BV
Date: 03-1982
DOI: 10.1016/0003-2697(82)90574-7
Abstract: Naproxen (NPX) is one of the most common pharmaceutical and personal care products found in surface water, which is recalcitrant to degradation by biological treatment or complete removal via traditional sewage treatment processes. In this study, nanoscale γ-FeOOH was synthesized and characterized by X-ray diffraction, scanning electron microscopy, surface analysis, and analysis of the forbidden bandwidth. Under UV irradiation, γ-FeOOH had the capacity to rapidly photodegrade NPX. The photodegradation rate of NPX was dependent on the concentration of γ-FeOOH in solution, initial NPX concentration, and pH. By increasing the concentration of γ-FeOOH, the NPX photodegradation rate was increased and then remained stable. Furthermore, the highest photodegradation rate for NPX was observed under acidic conditions. Through the analysis of the active substances (such as h
Publisher: Elsevier BV
Date: 04-1986
DOI: 10.1016/0166-0934(86)90073-X
Abstract: A single antibody dot immunoassay (SADI) was developed for use as a rapid, simple and sensitive technique for the direct assay of virus bound to nitrocellulose membranes. SADI has been tested for the detection of subterranean clover mottle virus (SCMoV) in small amounts of infected tissue and purified virus preparations, and the technique was found to be twelve times more sensitive than ELISA in terms of total antigen detected. DIBA, an indirect dot immunoassay, was about twice as sensitive as SADI, but the latter was more specific for the detection of SCMoV and is a simpler, more rapid assay, requiring less than three h to complete.
Publisher: S. Karger AG
Date: 1989
DOI: 10.1159/000150090
Abstract: A small single-stranded circular DNA has previously been reported to be associated with foliar decay disease of coconut palm in Vanuatu. Here we describe the isolation of unusual 20-nm icosahedral particles which copurify with foliar decay disease DNA and which we consider to be the coconut foliar decay virus. This virus seems to represent a novel group of plant viruses.
Publisher: Springer Science and Business Media LLC
Date: 13-09-2014
DOI: 10.1007/S00705-014-2200-6
Abstract: Viroids are the smallest autonomous infectious nucleic acids known so far. With a small circular RNA genome of about 250-400 nt, which apparently does not code for any protein, viroids replicate and move systemically in host plants. Since the discovery of the first viroid almost forty-five years ago, many different viroids have been isolated, characterized and, frequently, identified as the causal agents of plant diseases. The first viroid classification scheme was proposed in the early 1990s and adopted by the International Committee on Taxonomy of Viruses (ICTV) a few years later. Here, the current viroid taxonomy scheme and the criteria for viroid species demarcation are discussed, highlighting the main taxonomic questions currently under consideration by the ICTV Viroid Study Group. The impact of correct taxonomic annotation of viroid sequence variants is also addressed, taking into consideration the increasing application of next-generation sequencing and bioinformatics for known and previously unrecognized viroids.
Publisher: CSIRO Publishing
Date: 1989
DOI: 10.1071/AR9890807
Abstract: Alfalfa mosaic virus (AMV) infection of the annual barrel medic, Medicago truncatula, has been shown to cause significant reductions in growth and productivity in field and pot trials. The degree of reduction was dependent on the medic cultivar and the virus isolate. In some experiments herbage production was reduced by more than 50%. Although infection did not appear to be associated with significant changes in root growth, root nodulation of infected plants was about one-third less than that of healthy plants. Two AMV isolates showed different effects on seed production. Infection with one virus isolate was associated with a 15-30% decrease in seed production, and the virus was detected in more than 2% of seed from the infected plants, whereas the other isolate failed to reduce seed yield and did not appear to infect any seeds.
Publisher: Wiley
Date: 10-1976
Publisher: Wiley
Date: 06-1988
Publisher: Wiley
Date: 08-1989
Publisher: Elsevier BV
Date: 07-1972
Publisher: Elsevier BV
Date: 1981
DOI: 10.1016/0042-6822(81)90531-6
Abstract: Velvet tobacco mottle virus (VTMoV) isolated from Nicotiana velutina growing wild in arid Central Australia was transmitted by inoculation to a limited number of plant species of which N. clevelandii was the most convenient experimental host. The virus was also transmitted from field-grown plants toN. velutina and N. clevelandii by the mirid Cyropeltis nicotianae. VTMoV preparations purified by clarification with organic solvents and differential centrifugation contained polyhedral particles about 30 nm in diameter sedimenting as a single component at about 115 S. The particles were shown to be located in the nucleus, cytoplasm, and vacuoles of infected plant cells. Virus dissociated in the presence of mercaptoethanol and sodium dodecyl sulfate (SDS) separated into one major and two minor polypeptides with estimated molecular weights of 33,000, 36,000 and 31,000, respectively. Single-stranded RNA isolated from VTMoV by extraction with phenol was separated into five components with apparent molecular weights of 1.5 x 10(6), 0.63 x 10(6), 0.25 x 10(6), 0.16 x 10(6), and 0.12 x 10(6) referred to as RNAs 1, 1a, 1b, 2, and 3, respectively. It appears that RNAs 1a and 1b are breakdown products of RNA 1, as shown elsewhere, and electron microscopic examination of the other species showed that whereas RNAs 1 and 3 are linear molecules, RNA 2 is circular. The similarity of RNAs 2 and 3 to the RNA of viroids is discussed. VTMoV has been compared with several RNA plant viruses with small polyhedral particles. Only solanum nodiflorum mottle virus appears to share some of its unique features and the two have been shown to be antigenically related.
Publisher: Wiley
Date: 11-1999
DOI: 10.1046/J.1440-1673.1999.00718.X
Abstract: The primary purpose of the present analysis was to assess the feasibility and acute toxicity of a pure accelerated fractionation regimen in a cooperative group setting. This analysis included the first 320 patients entered on to the Trans-Tasman Radiation Oncology Group (TROG) randomized controlled trial which compared accelerated radiotherapy (ART) with conventional radiotherapy (CRT) in stage III and IV squamous cell carcinoma (SCC) of the head and neck. Patients were randomized to either 59.4 Gy in 33 fractions over 24 days (ART) or to 70 Gy 35 fractions over 49 days (CRT) after being stratified for site and stage. Accrual began in 1991 and the trial was closed on 3 April 1998 with the targeted 350 patients. The 3-year survival for the whole group was 54%, and the 3-year disease-free survival was 41%. Toxicity data were available on 303 patients (148 ART 155 CRT). Mucosal toxicity was worse in the accelerated arm, and it peaked approximately 3 weeks earlier than the conventional arm. Skin toxicity was equivalent but occurred approximately 7 days earlier in the accelerated arm. Acute effects in both arms healed completely. Hospitalization was more common in the ART arm (71 vs 52 patients P = 0.01) but the total bed days in hospital was not greatly different (1707 bed days for ART and 1607 bed days for CRT). Patients were more likely to require nasogastric (NG) feeding in the ART arm (49 vs 33 patients P = 0.02). There were 1157 NG feeding days for ART and 1154 NG feeding days for CRT. The average cost of radiation treatment per patient including hospitalization, NG feeding and accommodation was $11,750 in the ART arm and $11,587 in the CRT arm. The accelerated arm has been shown to be a tolerable, practical and cost-equivalent regimen. The assessment of the therapeutic ratio of this accelerated protocol (ART) will be determined when the analysis of late effects and loco-regional control is made when the data are more mature.
Publisher: Wiley
Date: 08-1983
Publisher: CSIRO Publishing
Date: 1974
DOI: 10.1071/AR9740791
Abstract: When Hyperomyzus lactucae are given acquisition feeds of 24 hr on Sonchus oleraceus infected with lettuce necrotic yellows virus (LNYV) a temperature-dependent latent period must be completed before the virus can be transmitted. The mean duration of latent period is 18.0, 9.2 and 5.4 days at 15, 20 and 28°C respectively. On completion of the latent period, H. lactucae transmit LNYV consistently. Within 24 hr of reaching the fourth instar, nymphs which have developed on virus-infected S. oleraceus are capable of transmitting the virus, adult apterae and alatae transmit more efficiently than nymphs, and the efficiency of transmission is similar for both morphological forms of the aphid. The longer the inoculation feed by viruliferous H. lactucae, the greater are the chances for successful transmission of the virus to either S. oleraceus or lettuce seedlings. The inoculation thresholds are between 5 and 30 min on S. oleraceus and 1–5 min on lettuce. During this time stylets penetrate the epidermal layer only, which indicates that aphids can inoculate without penetrating the vascular tissue. Transovarial transmission has been demonstrated in viruliferous viviparae apterae, but the rate of passage of virus to progeny is low out of 73 sets of progeny 5 sets acquired LNYV maternally. It appears that nymphs which acquire the virus maternally complete the latent period at or shortly after birth. At 20 and 28°, the longevity of aphids transmitting LNYV is less than that of those not transmitting. When apterous H. lactucae freshly removed from S. oleraceus are allowed to probe on lettuce they generally walk off the plant however, the tendency to settle in a feeding position is considerably increased when they are 'pretreated' by starving them in continuous light at a lowered relative humidity of 65–70%. Salivary secretions are deposited on the leaves of both S. oleraceus and lettuce when either pretreated or untreated aphids are caged on them. Depth of probing increases with time up to 30 min on both hosts, but after this aphids feeding on lettuce tend to withdraw their stylets. Pretreated H. lactucae given access to 32P-labelled plants took up 17 times more sap from S. oleraceus than from lettuce. ____________________ *Part II, Aust. J. Agric. Res., 22: 231 (1974).
Publisher: Springer Science and Business Media LLC
Date: 2001
DOI: 10.1071/AP01028
Publisher: CSIRO Publishing
Date: 2012
DOI: 10.1071/CP12121
Abstract: In the mid 2000s subterranean clover (Trifolium subterraneum) seed producers in South Australia reported symptoms of a red-leaf disease in fields with reduced seed yields. The red-leaf symptoms resembled those caused by several clover-infecting viruses. A set of molecular diagnostic tools were developed for the following viruses which are known to infect subterranean clover: Alfalfa mosaic virus Bean leafroll virus (BLRV) Beet western yellows virus Bean yellow mosaic virus Cucumber mosaic virus Pea seed-borne mosaic virus Soybean dwarf virus and Subterranean clover stunt virus. Surveys of subterranean clover seed production fields in 2008 in the south-east of South Australia and western Victoria identified Bean leafroll virus, Alfalfa mosaic virus and Cucumber mosaic virus as present, with BLRV the most widespread. Surveys of pasture seed production fields and pasture evaluation trials in 2009 confirmed that BLRV was widespread. This result will allow seed producers to determine whether control measures directed against BLRV will overcome their seed losses. Bluegreen aphid (Acyrthosiphon kondoi) was implicated as a potential vector of BLRV because it was observed to be colonising lucerne plants adjacent to subterranean clover seed production paddocks with BLRV, and in a glasshouse trial it transmitted BLRV from an infected lucerne plant to subterranean clover in a persistent manner.
Publisher: Wiley
Date: 15-11-2011
Publisher: Wiley
Date: 05-1981
Publisher: CSIRO Publishing
Date: 1970
DOI: 10.1071/AR9700447
Abstract: The seasonal incidence of lettuce necrotic yellows virus (LNYV) was investigated over a period of 19 months in lettuce crops at a site near Adelaide. Incidence was high in November and December 1965 and in May 1966 but was negligible in crops grown at other times. A constant association was observed between high disease incidence and increased migratory activity of Hyperomyzus lactucae. Peaks in the incidence of LNYV were observed 4-5 weeks after peak numbers of alate H. lactucae were trapped. Of the aphid species trapped at this site, it appears that H. Iactucae was the sole important vector of LNYV. Comparatively large numbers of alate H. lactucae were trapped only when mean weekly temperatures were in the range 60-72�F. It is suggested that meteorological data could be used in conjunction with observations of aphid populations to determine periods when spread of LNYV is likely.
Publisher: Elsevier
Date: 2017
Publisher: Elsevier BV
Date: 07-1979
DOI: 10.1016/0042-6822(79)90171-5
Abstract: The ribonucleic acids, ccRNA-1 and ceRNA-2, associated with cadang-cadang disease are circular single-stranded molecules comprising 310 +/- 3 nucleotides and 438 +/- 5 nucleotides, respectively their molecular weights are estimated to be 1.05 and 1.49 x 10(5) daltons. Therefore ceRNA-2 appears not to be a dimer of ccRNA-1, although it is known to have nucleotide sequences in common with ccRNA-1. Differences in the native structure of the two RNAs as determined by length measurements may account for previously described differences in their properties. Both RNAs resemble viroids, but ccRNA-1 is smaller, and ceRNA-2 is larger, than the viroids which have been characterized.
Publisher: Springer Science and Business Media LLC
Date: 1993
DOI: 10.1071/APP9930068
Publisher: Springer Science and Business Media LLC
Date: 12-2004
DOI: 10.1007/S11262-004-7433-0
Abstract: N20-RNA 3L, a large form of RNA 3 associated with Alfalfa mosaic virus (AMV) strain N20 comprises 2281 nt and has approximately 97% overall sequence similarity to the longest previously described RNA 3 of AMV strain YSMV (YSMV-RNA 3 2188 nt). Compared with YSMV-RNA 3, N20-RNA 3L contains an additional 97 nt in the 5' leader upstream of the open reading frames for movement protein (MP) and coat protein (CP). Two overlapping unidentified reading frames (URF1 and URF2) result from this modification, each of which code for putative translation products of 21 amino acids. The URF1 putative peptide has a hydrophilic N-terminus and a hydrophobic C-terminus, indicating a possible association with both host cell membrane and cytosol whereas the putative URF2 product is predominantly hydrophobic. A further structural modification found in N20-RNA 3L is a new tandem repeat of 243 nts which overlaps with the MP open reading frame.
Publisher: CSIRO Publishing
Date: 1980
DOI: 10.1071/BI9800245
Abstract: A virus isolated from a tick bean (Vicia /aba L. var. minor Beck) from South Australia has been shown to be closely related to bean yellow mosaic virus (BYMV) by its particle length, by the types of inclusion bodies it induced in cells, and by the serological relationships and amino acid composition of its particles. However, its experimental host range and the symptoms it caused differed from those of typical BYMV, and it is concluded therefore that it is a previously undescribed strain of this virus, BYMV-S. Analyses of the coat protein of BYMV-S confirmed the value of using the amino acid composition as a criterion for assessing the relationships of potyviruses and for identifying new isolates.
Publisher: MDPI AG
Date: 28-09-2021
Abstract: Viroids were discovered by Diener in 1971 [...]
Publisher: CSIRO Publishing
Date: 1967
DOI: 10.1071/AR9670289
Abstract: Results are presented of 3 years of aphid trapping and 3 years of surveys of the incidence of infection with cauliflower mosaic virus in Brassica crops at two sites in South Australia. Mosaic infection has been found to be of importance only in cauliflower plantings. The incidence of the disease varied greatly at the two sites, which were located in climatically different regions. In the Adelaide Hills significant spread of the disease occurred only through the autumn months March, April, and May, and in only one of the three years did the incidence of the disease reach epidemic proportions. On the Adelaide Plains spread of the disease occurred throughout the cooler months of the year, from March till September. At both locations increasing incidence of the disease followed increases in the number of trapped aphid vector species. Results indicate that the most important vector in the field is likely to be Brevicoryne brassicae. Trials suggest that seed-bed infection with the virus can be reduced by the use of barrier crops.
Publisher: Elsevier BV
Date: 12-1983
DOI: 10.1016/0003-2697(83)90685-1
Abstract: A new gel electrophoretic technique for the rapid and sensitive detection of circular viroids and virusoids is described. Starting from plant material, a typical multis le analysis requires less than 8 h. Viroid concentrations as low as 60 ng/g tissue can be detected unambiguously without the use of radioactivity or highly specialized laboratory equipment. The technique presented here is compared to earlier methods of gel electrophoresis, nucleic acid fingerprinting, and currently employed hybridization techniques. A number of important technical advantages, including speed, simplicity, and sensitivity, suggest that the methods described here may have wide utility in checking the spread of viroid infections.
Publisher: Microbiology Society
Date: 04-1995
DOI: 10.1099/0022-1317-76-4-971
Abstract: Virus particles were reassembled in vitro from tomato aspermy virus strain V (V-TAV) RNA and a mixture of subunits prepared from V-TAV and 35S-labelled cucumber mosaic virus strain T (T-CMV). Immunodiffusion tests showed that the reassembled particles reacted with polyclonal antisera raised against both V-TAV and T-CMV. Radioactivity was found in the precipitin line formed between the reassembled particles and antiserum raised against T-CMV as well as in the precipitin line formed between the reassembled particles and antiserum raised against V-TAV. This shows that 35S-labelled T-CMV protein subunits were incorporated with V-TAV protein subunits into the same particles. Thus, coat proteins of V-TAV and T-CMV can co-assemble and form mixed-subunit capsids in vitro.
Publisher: Microbiology Society
Date: 12-1991
DOI: 10.1099/0022-1317-72-12-2885
Abstract: A local lesion isolate of alfalfa mosaic virus (AMV-N20) from lucerne was found to encapsidate two extra RNAs in addition to the four major RNAs (RNA1, -2, -3 and -4). These were resolved by gel electrophoresis both under native conditions and after glyoxal denaturation. The RNA with an electrophoretic mobility between that of RNAs 2 and 3 was designated RNA31, that between RNAs 3 and 4 was designated RNA3s. Sucrose density gradient centrifugation analysis of AMV-N20 showed six instead of the normal four nucleoprotein components, the additional two presumably representing encapsidated RNAs 31 and 3s. RNAs 31 and 3s were both shown by Northern blot hybridization to be unrelated to host plant RNA and to contain the AMV coat protein gene sequence, which resides in RNA3. Primer extension of the RNAs 31 and 3s using a primer complementary to the 3' common terminus of all genomic AMV RNAs provided further evidence that they contained AMV sequences. RNA31 represents an addition of about 255 nucleotides, compared with RNA3, and RNA3s represents a loss of about 308 nucleotides. The coat proteins of variants encapsidating either RNA31, -3 or -3s had the same Mr indicating that the addition or deletion of the nucleotides was outside the coat protein gene. Serial mechanical passage of AMV-N20 over 5 years in four host species led both to changes in the composition of the RNA3 mixture, and to changes in symptom severity. For ex le, following passage in Nicotiana clevelandii, RNA3 was lost whereas passage in either N. glutinosa, Chenopodium quinoa or C. amaranticolor resulted in the loss of RNA31. No association was found between the changes in RNA3 and phenotypic changes that resulted from continuous passage for 5 years. Phenotypic changes with passage are thus presumably determined by mutations elsewhere in the virus genome.
Publisher: CSIRO Publishing
Date: 2001
DOI: 10.1071/AR00059
Abstract: Medicago truncatula is used as a pasture legume and a source of nitrogen for grain crops in southern Australia. Alfalfa mosaic virus (AMV) infection reduces herbage production and nodulation. The coat protein gene of a South Australian strain of AMV (AMV N20) has been transferred to Medicago truncatula cv. Jemalong 2HA using Agrobacterium-mediated transformation. The most detailed investigations were carried out with the coat protein gene in the sense orientation (CP+). Progeny (T1, T2, T3) raised from self-pollinated primary transformants (T0) containing the coat protein CP+ gene were resistant to AMV. Based on Southern analysis and segregation, the transformants contained a single gene copy. In the T3 generation, one line was immune and one line showed resistance to AMV N20. The immune line contained no detectable virus when plant sap from either inoculated or systemic leaves was bioassayed on Phaseolus vulgaris. This line was also immune to the heterologous AMV S40 isolate. A line with the coat protein gene in antisense orientation (CP–) showed delayed systemic infection but was not immune. We conclude that coat protein mediated protection (CPMP) is an effective strategy for controlling AMV infection and should be further evaluated in the field.
Publisher: Springer Science and Business Media LLC
Date: 03-06-2008
DOI: 10.1007/S00705-008-0124-8
Abstract: We have investigated the ability of satellite DNA beta to complement mutations in the CP, V2 and C4 genes of the monopartite begomovirus, tomato leaf curl virus, which are potentially involved in movement. A mutation in the coat protein was not complemented by DNA beta. Mutations of the C4 and V2 genes attenuated and abolished symptoms, respectively. In the presence of the C4 mutant, but not the V2 mutant, DNA beta induced typical symptoms, confirming that the satellite encodes a dominant symptom determinant. In contrast to the C4 mutant, DNA beta did not enhance the viral DNA levels of the V2 mutant, suggesting that V2 is required for this phenomenon. The significance of these findings is discussed based on our present understanding of the functions of the viral genes and DNA beta.
Publisher: Microbiology Society
Date: 06-1979
Publisher: Elsevier BV
Date: 04-2006
DOI: 10.1016/J.VIROL.2005.11.054
Abstract: Geminiviruses have been reported to replicate in, and localize to, the nuclei of host plant cells. We have investigated the tissue and intracellular distribution of the monopartite Tomato leaf curl virus (TLCV) by in situ hybridization. Contrary to the current understanding of geminiviral localization, single-stranded (ss) DNA of TLCV accumulated in the cytoplasm. TLCV ssDNA was also found in the nucleus, as was lower levels of replicative form double-stranded (ds) DNA. Under the same conditions, Tomato golden mosaic virus (TGMV) ssDNA and dsDNA were found in nuclei. ssDNA of TLCV, TGMV, and Tomato yellow leaf curl Sardinia virus (TYLCSV) was detected in some xylem vessels under specific hybridization conditions. Tissue specificity of TLCV was partially released by co-infection with TGMV. Our observations suggest that the mechanism of TLCV movement may differ from that of bipartite begomoviruses.
Publisher: CSIRO Publishing
Date: 1991
DOI: 10.1071/AR9910441
Abstract: Five isolates of pea seed-borne mosaic virus (US, S4, S6, Q and T) were compared by host range and symptomatology on 16 Pisum sativum cultivars and lines, 21 lines of Lathyrus and Lens spp. and several indicator species. All selections of Pisum sativum, except cv. Greenfeast, were susceptible to all isolates, but Greenfeast was susceptible to the US isolate. All isolates except T infected the Lathyrus and Lens spp. through mechanical and aphid transmissions. Chenopodium amaranticolor and Vicia faba reacted similarly to all isolates, Phaseolus vulgaris cv. Hawkesbury Wonder reacted to none. The North American isolate (US) was distinguished from the Australian S4, S6, Q, and T isolates by infecting Nicotiana clevelandii and Greenfeast pea. In all cases the highest rate of seed transmission occurred in the largest seed (82-91%) and the lowest was in the smallest seed (27-40%). Infected seed in the largest size classes was lighter in weight than the corresponding uninfected seed. Infected seed in all classes had a significantly lower germination rate than uninfected seed although the greatest reduction in germinability was in the smallest seed. In each size class uninfected seed was heavier than infected seed and germinated better. Two-dimensional immunodiffusion tests showed that precipitin lines between all the isolates and either the US and S6 antisera were confluent with no evidence of spurs. A rapid and sensitive indirect dot-immunobinding assay on nitrocellulose membrane for PSbMV was developed in which non-specific reactions were eliminated by using mannose and glucose in buffers, and healthy plant sap as a blocking agent. The limit of detection of antigen was about 32 ng per s le. Both of the antisera detected antigen in sap extracted from peas infected with the 6 PSbMV isolates, originating from the USA, Australia, New Zealand and Denmark and all isolates were detected at similar antiserum dilution endpoints.
Publisher: Elsevier BV
Date: 07-2012
DOI: 10.1016/J.VIRUSRES.2012.03.012
Abstract: DNA β satellites are circular single-stranded molecules associated with some monopartite begomoviruses in the family Geminiviridae. They co-infect with their helper viruses to induce severe disease in economically important crops. The βC1 protein encoded by DNA β is a pathogenicity determinant and has been reported to suppress post-transcriptional gene silencing (PTGS). The βC1 proteins from various DNA β molecules show low levels of amino acid sequence conservation. We show here that the βC1 from DNA β associated with Cotton leaf curl Multan virus (CLCuMV) is a suppressor of systemic PTGS. When this DNA β satellite co-inoculated with a heterologous helper virus, Tomato leaf curl virus (ToLCV), reduced the level of ToLCV siRNA and this was associated with a higher level of virus accumulation in infected tobacco plants. This may be a mechanism by which βC1 protects a heterologous virus from host gene silencing.
Publisher: Wiley
Date: 09-1985
Publisher: Oxford University Press (OUP)
Date: 1982
Abstract: The sedimentation coefficients of the potato spindle tuber viroid, four viroid-like RNAs from cadang-cadang-disease, circular RNA from velvet tobacco mottle virus, circular RNA from Solanum nodiflorum mottle virus and double stranded RNA5 from cucumber mosaic virus were measured in the analytical ultracentrifuge. The numbers of nucleotides of the RNA species varied between 246 and 670. The hydrodynamic models of rigid rods and flexible cylinders were applied for the interpretation of the sedimentation coefficients. Double-stranded RNA5 from cucumber mosaic virus with 335 basepairs fits the model of a rigid rod with an hydrated diameter of 29 A. Potato spindle tuber viroid and the four viroid-like RNA species of cadang-cadang-disease form a homologous series of flexible cylinders with a Kuhn's statistical length lambda-1 of 600 A. The circular RNA from the two viruses mentioned above are more flexibel than the viroids and viroid-like RNAs. The hydrodynamic interpretation is in accordance with thermodynamic data and secondary structure models. In two of the RNAs from cadang-cadang, cruciform structures would also be possible on the basis of the nucleotide sequence. The hydrodynamic data, however, favour clearly the extended structure over the cruciform.
Publisher: Wiley
Date: 06-2003
Publisher: Elsevier BV
Date: 10-1972
DOI: 10.1016/0042-6822(72)90377-7
Abstract: Convection enhanced delivery (CED) is emerging as a promising infusion toolto facilitate delivery of therapeutic agents into the brain via mechanically controlled pumps. Infusion protocols and catheter design have an important impact on delivery. CED is a valid alternative for systemic administration of agents in clinical trials for cell and gene therapies. Where gel and ex vivo models are not sufficient in modeling the disease, in vivo models allow researchers to better understand the underlying mechanisms of neuron degeneration, which is helpful in finding novel approaches to control the process or reverse the progression. Determining the risks, benefits, and efficacy of new gene therapies introduced via CED will pave a way to enter human clinical trial. The objective of this study is to compare volume distribution (Vd)/ volume infused (Vi) ratios and backflow measurements following CED infusions in ex vivo versus in vivo non-human primate brain tissue, based on infusion protocols developed in vitro. In ex vivo infusions, the first brain received 2 infusions using a balloon catheter at rates of 1 μL/min and 2 μL/min for 30 minutes. The second and third brains received infusions using a valve-tip (VT) catheter at 1 μL/min for 30 minutes. The fourth brain received a total of 45 μL infused at a rate of 1 μL/min for 15 minutes followed by 2 μL/min for 15 minutes. Imaging was performed (SPGR FA34) every 3 minutes. In the in vivo group, 4 subjects received a total of 8 infusions of 50 μL. Subjects 1 and 2 received infusions at 1.0 μL/min using a VT catheter in the left hemisphere and a smart-flow (SF) catheter in the right hemisphere. Subjects 3 and 4 each received 1 infusion in the left and right hemisphere at 1.0 μL/min. MRI calculations of Vd/Vi did not significantly differ from those obtained on post-mortem pathology. The mean measured Vd/Vi of in vivo (5.23 + /-1.67) compared to ex vivo (2.17 + /-1.39) demonstrated a significantly larger Vd/Vi for in vivo by 2.4 times (p = 0.0017). We detected higher ratios in the in vivo subjects than in ex vivo. This difference could be explained by the extra cellular space volume fraction. Studies evaluating backflow and morphology use in vivo tissue as a medium are recommended. Further investigation is warranted to evaluate the role blood pressure and heart rate may play in human CED clinical trials.
Publisher: Springer Science and Business Media LLC
Date: 2006
DOI: 10.1071/AP06013
Publisher: Wiley
Date: 02-1991
Publisher: Scientific Societies
Date: 04-1997
DOI: 10.1094/PDIS.1997.81.4.343
Abstract: Sixty-two commercial pea fields or experimental plots located in eight districts of the major pea-growing areas of North West Frontier Province (NWFP) of Pakistan were surveyed for pea viruses in the early winter growing season of 1995. S les were analyzed by dot-immunobinding assay (DIBA) using antisera to 14 different viruses. Of the 713 plants s led, 82 were positive for either bean yellow mosaic potyvirus, cucumber mosaic cucumovirus, or pea seedborne mosaic potyvirus (PSbMV), with an average incidence of 9.4, 0.57, and 1.5%, respectively. PSbMV was also detected in 1 to 5% of dry seed from five of the 12 pea varieties tested and in 8 to 20% of seedlings raised from seed of three of these varieties. The infectivities of 12 PSbMV isolates found in the survey of pea varieties from Pakistan were compared using a standard range of pea differential genotypes, and the isolates were classified into four distinct pathotypes. Four isolates were classified as pathotype P-1 and two as P-4. The remainder did not fit into the existing PSbMV pathotype classification and were tentatively placed into two other groups named U-1 and U-2.
Publisher: Microbiology Society
Date: 07-2007
Abstract: Tomato leaf curl virus (TLCV) satellite DNA (sat-DNA) is a 682 nt, circular, single-stranded molecule that lacks an open reading frame (ORF) or an apparent promoter. It contains binding motifs for the TLCV replication-associated protein, but these are dispensable for replication. To identify the regions of the sat-DNA critical for replication, the entire sequence was scanned by deletion/replacement mutagenesis. Transient assays using Nicotiana benthamiana revealed that sequences within nt 296–35 (through nt 682) are essential for replication. Sequence deletions and replacements between nt 35 and 296 were tolerated but with a significant loss of infectivity, indicating that genome size strongly influences replication efficiency. Within the permissible region, inserts of 100–700 nt were retained in transient assays although with a slight reduction in replication. In addition, sat-DNA constructs containing short non-viral DNAs replicated and spread in tobacco plants, indicating their potential as gene-delivery vectors.
Publisher: Elsevier BV
Date: 3965
Publisher: Elsevier BV
Date: 06-1990
DOI: 10.1016/0042-6822(90)90038-S
Abstract: A circular single-stranded (ss) covalently closed (ccc) DNA associated with coconut foliar decay virus (CFDV) was purified, lified by the polymerase chain reaction, and subcloned and its sequence established by analysis of overlapping subgenomic cDNA clones. The complete CFDV sequence comprised 1291 nucleotides and contained open reading frames for six proteins of molecular weight larger than 5 kDa. One of these (ORF1, 33.4 kDa) codes for a leucine-rich protein with the nucleoside triphosphate-binding motif GXGKS and may possibly participate in virus replication. The putative viral protein encoded by ORF3 (6.4 kDa) is a positively charged arginine-rich protein with homology to the capsid protein of nuclear polyhedrosis virus, and may represent the CFDV coat protein. CFDV DNA can form a stable stem structure of 10 GC base pairs subtending a loop sequence which in one orientation closely resembles the motif TAATATTAC conserved in a similar structural arrangement within the geminivirus group. Otherwise no sequence homology to DNA-containing plant viruses of the gemini- or caulimovirus groups was found. CFDV therefore represents a new taxonomic group of plant viruses.
Publisher: Scientific Societies
Date: 05-2003
DOI: 10.1094/MPMI.2003.16.5.429
Abstract: Promoters isolated from the Tomato leaf curl virus (TLCV) drive both constitutive and tissue-specific expression in transgenic tobacco. Following systemic TLCV infection of plants stably expressing TLCV promoter:GUS transgenes, transgene expression driven by all six TLCV promoters was silenced. Silencing in the TLCV coat protein promoter:GUS plants (V2:GUSΔC) was characterized in more detail. Transgene silencing observed in leaf, stem, and preanthesis floral tissue occurred with the continued replication of TLCV in host tissues. Infection of the V2:GUSΔC plants with heterologous geminiviruses did not result in transgene silencing, indicating that silencing was specifically associated with TLCV infection. Nuclear run-on assays indicated that silencing was due to the abolition of transcription from the V2:GUSΔC transgene. Bisulfite sequencing showed that silencing was associated with cytosine hypermethylation of the TLCV-derived promoter sequences of the V2:GUSΔC transgene. Progeny derived from V2:GUSΔC plants silenced by TLCV infection were analyzed. Transgene expression was silenced in progeny seedlings but was partially reactivated in the majority of plants by 75 days postgermination. Progeny seedlings treated with the nonmethylatable cytosine analog 5-azacytidine or the histone deacetylase inhibitor sodium butyrate exhibited partial reactivation of expression. This is the first report of the hypermethylation of a virus-derived transgene associated with a DNA virus infection.
Publisher: Elsevier BV
Date: 07-1972
Publisher: Elsevier BV
Date: 10-1976
Publisher: Elsevier BV
Date: 07-0022
DOI: 10.1016/0042-6822(70)90167-4
Abstract: Identifying relationships between feeding intolerance (FI), inflammation, and early measures of neurodevelopment may provide the basis for clinically relevant assessments for NICU clinicians and staff. The purpose of this secondary analysis was to examine the relationship of FI to inflammatory markers and/or neurobehaviors in the first week of life. This was a retrospective, matched case-control design with data drawn from 114 infants born at ≤32 weeks gestation. Eight infants developed FI prior to full enteral feedings. These infants were more likely to have dysregulated levels of cytokines, specifically IL6, and lower neurodevelopmental scores compared to infants without FI. Results suggest physiologic dysregulation and an immature nervous system may contribute to the phenomenon of FI in preterm infants. Further research to identify the role of the brain-gut-immune axis on FI and other GI complications in this population is warranted.
Publisher: No publisher found
Date: 1968
DOI: 10.1016/0042-6822(68)90187-6
Abstract: Autonomic nervous system (ANS) dysregulation in depression is associated with symptoms associated with the ANS. The beat-to-beat pattern of heart rate defined as heart rate variability (HRV) provides a noninvasive portal to ANS function and has been proposed to represent a means of quantifying resting vagal tone. We quantified HRV in bipolar depressed (BDD) patients as a measure of ANS dysregulation seeking to establish HRV as a potential diagnostic and prognostic biomarker for treatment outcome. Forty-seven BDD patients were enrolled. They were randomized to receive either escitalopram-celecoxib or escitalopram-placebo over 8 weeks in a double-blind study design. Thirty-five patients completed the HRV studies. Thirty-six healthy subjects served as controls. HRV was assessed at pretreatment and end of study and compared with that of controls. HRV was quantified and corrected for artifacts using an algorithm that incorporates time and frequency domains to address non-stationarity of the beat-to-beat heart rate pattern. Baseline high frequency-HRV (i.e., respiratory sinus arrhythmia) was lower in BDD patients than controls, although the difference did not reach significance. Baseline low-frequency HRV was significantly lower in BDD patients (ln4.20) than controls (ln = 5.50) (
Publisher: Microbiology Society
Date: 07-1977
Publisher: Springer Science and Business Media LLC
Date: 1983
DOI: 10.1007/BF00537813
Publisher: Microbiology Society
Date: 05-1990
DOI: 10.1099/0022-1317-71-5-1019
Abstract: DNA complementary to Nicotiana velutina mosaic virus (NVMV) RNA was cloned and five segments larger than 0.9 kb were used in Northern blot hybridization analysis to identify two virus-specific RNAs, approximately 8 kb (RNA 1) and 3 kb (RNA 2) in size. The clones selected as probes did not hybridize with RNA from various tobamoviruses, or from beet necrotic yellow vein (BNYVV) and peanut clump furoviruses. In an attempt to determine the taxonomic position of the virus, about 75% of the NVMV RNA 2 was sequenced and four open reading frames (ORFs) were identified. ORFs 1, 2 and 3 encode proteins of Mr 20K, 39K and 13K, whereas ORF 4 was incomplete. ORFs 2, 3 and 4 overlapped in an arrangement closely resembling the triple gene block identified in BNYVV RNA 2, barley stripe mosaic virus (BSMV) RNA 2, potato virus X and potato virus M RNA. The presumed coat protein gene of NVMV RNA 2 (ORF 1) is situated to the 5' side of the triple gene block as for BNYVV and BSMV RNA 2. Amino acid homologies were detected among the 13K and 14K proteins of NVMV RNA 2, BNYVV RNA 2 and BSMV RNA 2. Significant homology was also detected between the 39K protein of NVMV RNA 2 and the 42K protein of BNYVV RNA 2, with a motif specific for ATP- and GTP-binding (NTP-binding motif), and a conserved viral DNA polymerase domain. The presence of a triple gene block in NVMV RNA 2 indicates that NVMV has affinities with members of the hordei-, furo-, potex- and carlavirus groups but not with the tobamovirus group. The ided RNA genome of NVMV, and the sizes of the two RNAs suggest that NVMV is most closely allied to the furoviruses, but the unique nature of its different biological properties and lack of any serological relationships with furoviruses lead us to conclude that NVMV has no clear relatedness to any taxonomic group of plant viruses.
Publisher: Wiley
Date: 13-03-2002
DOI: 10.1016/S0014-5793(02)02539-5
Abstract: We have previously shown that the soil-borne plant pathogen Agrobacterium tumefaciens supports the replication of tomato leaf curl geminivirus (Australian isolate) (TLCV) DNA. However, the reproducibility of this observation with other geminiviruses has been questioned. Here, we show that replicative DNA forms of three other geminiviruses also accumulate at varying levels in Agrobacterium. Geminiviral DNA constructs that lacked the ability to replicate in Agrobacterium were rendered replication-competent by changing their configuration so that two copies of the viral ori were present. Furthermore, we report that low-level replication of TLCV DNA can occur in Escherichia coli containing a dimeric TLCV construct in a high copy number plasmid. These findings were reinforced by expression studies using beta-glucuronidase which revealed that all six TLCV promoters are active in Agrobacterium, and two are functional in E. coli.
Publisher: Springer Science and Business Media LLC
Date: 1993
DOI: 10.1071/APP9930122
Publisher: Scientific Societies
Date: 10-1999
DOI: 10.1094/PHYTO.1999.89.10.877
Abstract: Sugarcane striate mosaic (ScSM)-affected sugarcane leaves contain a disease-associated 9-kilobase (kb) double-stranded RNA (dsRNA), usually together with 6- and 2.6-kb dsRNAs. The purified 9-kb dsRNA was lified by the randomly primed polymerase chain reaction (PCR) and cloned. The nucleotide sequences of three separate regions, representing about 2.55 kb (28%) of the dsRNA sequence, were found to have significant similarities to viruses in the genera Capillo-, Carla-, Fovea-, Potex-, Poty-, Tricho-, and Tymovirus. Greatest overall similarity was found to apple stem pitting virus, with less similarity to blueberry scorch virus and potato virus M. A standard virus purification procedure was used to identify slightly flexuous filamentous particles that copurified with the disease-associated RNA. Particle modal lengths were approximately 950 and 1,900 nm with a diameter of 15 nm. Preparations contained a 51-kDa putative capsid protein and a 9-kb single-stranded RNA with a probable 3′ polyadenylate tract. These ScSM-associated virus particles differ physically from viruses in existing genera because of their relative rigidity, length, and putative coat protein size. Reverse-transcription PCR with a primer pair designed from the sequenced segments lified a 820-base pair fragment from ScSM-affected but not healthy sugarcane plants.
Publisher: Oxford University Press (OUP)
Date: 1982
Abstract: The conformational transitions of viroid-like RNAs associated with cadang-cadang disease, velvet tobacco mottle virus, and solanum nodiflorum mottle virus were studied by melting analysis and fast temperature jump technique in 1 mM sodium-cacodylate, 10 mM NaCl, 0.1 mM EDTA, pH 6.8. The 4 circular RNAs of cadang-cadang show a highly cooperative transition between 45 and 49 degrees C, respectively, and a second transition of less hypochromicity at about 10 degrees C higher temperatures. The data are interpreted quantitatively on the basis of the sequences and secondary structure models. A very similar scheme for the structure and structural transitions as derived earlier for other viroids applies to the cadang-cadang RNAs. In the main transition the total native secondary structure is disrupted and a stable hairpin consisting of 9 base pairs is newly formed which dissociates in the second transition. The thermal denaturation of the circular RNAs from the viruses mentioned above is clearly distinct from viroid RNA in respect to stability and cooperativity. The results on cadang-cadang RNA are discussed in the light of recent hypotheses about the interference of viroids with the splicing process of the host cell.
Publisher: Informa UK Limited
Date: 12-1984
DOI: 10.1080/07391102.1984.10507591
Abstract: Viroids are single-stranded circular RNA molecules of 240 to 400 nucleotides which are pathogens of certain higher plants and replicate autonomously in the host cell. Virusoids are similar to viroids in respect to size and circularity but replicate only as genomic part of a plant virus. Their structure and structural transitions have been investigated by thermo-dynamic, kinetic and hydrodynamic methods. The special features of the sequences of these RNAs, which are the basis for their secondary structures and structural flexibility, are investigated with theoretical methods. A set of thermodynamic parameters for helix growth and loop formation is selected from the literature to calculate secondary structures and structural transitions of single-stranded RNAs. Appropriate modifications of the chosen parameter set are discussed. For calculations we used either Tinoco-plots and the model of "cooperative helices" or the Zuker-program based on the exact algorithm of Nussinov et al, or both. Calculations were done for viroids and virusoids. As both are single-stranded, circular RNAs we had to modify the Zuker-program as described in the appendix. Calculations are done for different viroids, i.e. potato spindle tuber, citrus exocortis, chrysanthemum stunt, coconut cadang-cadang, and avocado sunblotch, and for two virusoids, i.e. the circular RNAs of Solanum nodiflorum mottle virus, and velvet tobacco mottle virus. For viroids the calculations confirm our earlier theoretical and experimental results about the extended native structure and the highly cooperative transition into a branched structure. Virusoids show less base pairing, branching in the native secondary structure, and only low cooperativity during denaturation. They resemble more closely the properties of random sequences with length, G:C content, and circularity as in viroids but statistical sequences. The comparison of viroids, virusoids, and circular RNA or random sequences confirms the uniqueness of viroid structure.
Publisher: Wiley
Date: 04-1984
Publisher: MDPI AG
Date: 18-02-2022
Abstract: Studies on the ways in which viroids are transmitted are important for understanding their epidemiology and for developing effective control measures for viroid diseases. Viroids may be spread via vegetative propagules, mechanical damage, seed, pollen, or biological vectors. Vegetative propagation is the most prevalent mode of spread at the global, national and local level while further dissemination can readily occur by mechanical transmission through crop handling with viroid-contaminated hands or pruning and harvesting tools. The current knowledge of seed and pollen transmission of viroids in different crops is described. Biological vectors shown to transmit viroids include certain insects, parasitic plants, and goats. Under laboratory conditions, viroids were also shown to replicate in and be transmitted by phytopathogenic ascomycete fungi therefore, fungi possibly serve as biological vectors of viroids in nature. The term “mycoviroids or fungal viroids” has been introduced in order to denote these viroids. Experimentally, known sequence variants of viroids can be transmitted as recombinant infectious cDNA clones or transcripts. In this review, we endeavor to provide a comprehensive overview of the modes of viroid transmission under both natural and experimental situations. A special focus is the key findings which can be applied to the control of viroid diseases.
Publisher: Elsevier BV
Date: 02-1980
DOI: 10.1016/0042-6822(80)90498-5
Abstract: Preparations of Chloris striate mosaic virus (CSMV) were shown to contain circular single-stranded DNA with a molecular weight of 7.1 x 10(5) and a polypeptide molecular weight of 92.79 +/- 0.06 x 10(4). The buoyant density in CsCl of intact CSMV particles was shown to be 1.35 g.cm(-3). From these data and the capsomeric structure of CSMV (T. Hatta and R. 1. B. Francki, 1979, Virology92, 428-435) it is concluded that each geminate particle of CSMV has a molecular weight of about 3.8 x 10(6) and contains a single molecule of ss-DNA.
Publisher: Springer Science and Business Media LLC
Date: 10-2001
Abstract: A range of isolates of Pea seed-borne mosaic virus (PSbMV) was compared in the segments of the genome representing the partial NIb/CP/UTR and the partial P1-Pro/HC-Pro coding regions. Nucleotide and amino acid sequences, and a phylogenetic analysis of the CP region, ided isolates with available sequence information into two groups, one representing pathotype 4, the other pathotype 1. The pathotype 1 group showed greater ersity than the pathotype 4 group. A comparison of 14 isolates, S6 (a pathotype 4 isolate), US (a pathotype 1 isolate) and 12 isolates from Pakistan, by ribonuclease protection assay (RPA) using cRNA transcripts of the cloned partial NIb/CP/UTR regions of the S6, US and Pakistani isolate PK9 placed them into three distinct phylogenetic groups. RPA with a partial P1-Pro/HC-Pro cRNA probe identified a greater level of variation which was too high to be used for generating an overall phylogeny. Thus, RPA identified greater molecular ersity in PSbMV than described hitherto. We conclude that, in addition to the pathotypes 1 and 4 typified by US and S6 respectively, isolates of PSbMV from Pakistan include previously unrecognised molecular variants, and this accords with our previous recognition of new pathotypes from Pakistan.
Publisher: Springer Science and Business Media LLC
Date: 14-11-2013
DOI: 10.1007/S11262-013-1007-Y
Abstract: Velvet tobacco mottle virus (VTMoV) is a naturally occurring mirid-transmitted sobemovirus of native velvet tobacco (Nicotiana velutina) plants in the Australian arid zone. We have sequenced the coding region of a typical field isolate of VTMoV (isolate I-17-04, satellite-plus) and show that it differed by nine polymorphisms from the previously sequenced atypical ‘satellite-minus’ variant VTMoV-K1 (represented here as L-K1-04), while retaining the same genomic and amino acid sequence motifs. We also report that although L-K1-04 was confirmed to be free of detectable satellite RNA by gel electrophoretic assay, the satellite sequence was detected in it by RT-PCR assay. Nucleotide sequence variation among the RNA-dependent RNA polymerase open reading frames of 15 field and laboratory isolates identified four phylogenetic groups, but these did not show a pattern related to site or time of s ling. This result would be consistent with nucleotide sequence variants of VTMoV being dispersed widely by migrating adult mirid vectors.
Publisher: Wiley
Date: 12-1985
Publisher: Springer Science and Business Media LLC
Date: 11-11-2011
DOI: 10.1007/S00705-011-1156-Z
Abstract: Peach latent mosaic viroid isolates from peach and plum in Iran have been compared with an Australian isolate from nectarine. Thirteen sequence variants 336-338 nt in size were obtained. All variants clustered phylogenetically with variants reported from several hosts and countries. A total nucleic acid extract, a slightly longer than full-length RT-PCR licon, and a recombinant plasmid clone from the Australian isolate were all infectious to, and symptomatic in, mechanically inoculated peach seedlings. The infectious clone generated two progeny viroid molecules, which each showed 10 different mutations compared with the parent clone inoculated 30 days previously.
Publisher: Elsevier BV
Date: 04-1981
DOI: 10.1016/0042-6822(81)90072-6
Abstract: Neither the virus-like RNA (RNA 1) nor the viroid-like RNA (RNA 2) of velvet tobacco mottle virus (VTMoV) is capable of independent replication in Nicotiana clevelandii. The function of RNA 2 for the RNA 1 replication could not be fulfilled by conventional viroids such as those of chrysanthemum stunt, citrus exocortis, or the viroid-like RNAs associated with avocado sunblotch and cadang-cadang disease of coconut. Similarly, RNA 2 failed to replicate when coinoculated with RNAs of conventional viruses such as those of southern bean mosaic, sowbane mosaic, galinsoga mosaic, red clover necrotic mosaic, and carnation mottle, all of which possess genomes with molecular weights similar to those of VTMoV RNA 1. The interdependence of the two VTMoV RNAs for biological activity was so highly specific that the function of VTMoV RNA 2 could not be replaced by the viroid-like RNA 2 from solanum nodiflorum mottle virus (SNMV), a closely related virus, for the replication of VTMoV RNA 1. Similarly, SNMV RNA 2 could not be replaced by VTMoV RNA 2 for the replication of SNMV RNA 1. These data support the view that RNA 2 cannot be a satellite RNA or an independent viroid. It seems that viruses such as VTMoV may have originated from associations of conventional single-stranded RNA viruses and viroids or, alternatively, may represent a stage in the evolution of viroids from viruses.
Publisher: Frontiers Media SA
Date: 2017
Abstract: Begomoviruses (the family Geminiviridae) have either a monopartite or a bipartite (DNA A and DNA B) single-stranded DNA genome. DNA B contains the open reading frame for movement protein and enables some bipartite begomoviruses to invade non-phloem tissues, whereas monopartite begomoviruses are limited to the phloem. Betasatellite DNA replicates in association with some monopartite begomoviruses to produce severe symptoms and enhance replication of helper virus in some hosts. The cotton leaf curl Multan betasatellite (CLCuMuB) has been shown to substitute for the DNA B of a bipartite begomovirus by permitting systemic infection, but the tissue tropism and the role of betasatellites in releasing monopartite begomoviruses from the phloem to adjacent tissue has not been described. In this study, the tissue tropism of CLCuMuB and a monopartite helper virus, tomato leaf curl virus (ToLCV), has been investigated using in situ hybridization, promoter localization and analysis of transgenic 2β plants, which contain a dimer of the CLCuMuB genome. In situ hybridization showed that CLCuMuB and ToLCV were localized into the vascular tissue of infected plants. In addition, CLCuMuB was detected only in the vascular tissue of 2β transgenic plants after infection with ToLCV. β-glucuronidase (GUS) expression under the βC1 promoter was also limited to the phloem tissues. In conclusion, we showed for the first time that CLCuMuB localizes only in the phloem tissues and unlike the DNA B component, CLCuMuB is unable to release the monopartite helper virus out of phloem tissues.
Publisher: Scientific Societies
Date: 06-2009
Abstract: DNA β is a single-stranded satellite DNA which encodes a single gene, βC1. To better understand the role of βC1 in the pathogenicity of DNA β, a yeast two-hybrid screen of a tomato cDNA library was carried out using βC1 from Cotton leaf curl Multan virus (CLCuMV) DNA β as the bait. A ubiquitin-conjugating enzyme, designated SlUBC3, which functionally complemented a yeast mutant deficient in ubiquitin-conjugating enzymes was identified. The authenticity and specificity of the interaction between βC1 and SlUBC3 was confirmed both in vivo, using a bimolecular fluorescence complementation assay, and in vitro, using a protein-binding assay. Analysis of deletion mutants of the βC1 protein showed that a myristoylation-like motif is required both for its interaction with SlUBC3 and the induction of DNA-β-specific symptoms in host plants. The level of polyubiquitinated proteins in transgenic tobacco plants expressing βC1 was found to be reduced compared with wild-type plants. These results are consistent with the hypothesis that interaction of βC1 with SlUBC3 is required for DNA-β-specific symptom induction, and that this is possibly due to downregulation of the host ubiquitin proteasome pathway.
Publisher: Springer Science and Business Media LLC
Date: 21-09-2010
DOI: 10.1007/S00705-010-0801-2
Abstract: Velvet tobacco mottle virus (VTMoV) infects the native Australian plant Nicotiana velutina, which is endemic to central Australia. This virus is included in the genus Sobemovirus based on virion morphology and serological relationships. We report here the full genome sequence of VTMoV, attained using a genome-walking strategy with both degenerate and specific primers. This sequence confirms that VTMoV is a sobemovirus, with the same open reading frame (ORF) organisation as other described sobemoviruses. The VTMoV sequence is closest to those sobemoviruses isolated from monocotyledonous plants, although the narrow host range of VTMoV is limited to dicotyledonous plants.
Publisher: Elsevier
Date: 2017
Publisher: Scientific Societies
Date: 08-1998
DOI: 10.1094/PHYTO.1998.88.8.774
Abstract: Tinangaja is a widespread lethal disease of putative viroid etiology affecting coconut palm on the island of Guam. Determination of its distribution and mode of spread requires a simple and reliable diagnostic procedure that is specific for the associated coconut tinangaja viroid (CTiVd). A method of extracting tissue followed by analytical agarose gel electrophoresis for CTiVd detection has been developed and used to identify the viroid in leaf s les of suspect symptomatic palms growing in the field. Two-dimensional polyacrylamide gel electrophoresis showed that the viroid band contained circular molecules that are typical for viroids. Confirmation of the identity of CTiVd and detection of low levels of viroid below the threshold of detection by agarose gel electrophoresis was achieved either by diagnostic oligonucleotide-probe (DOP) hybridization assay or by reverse-transcription polymerase chain reaction (RT-PCR) with the oligonucleotide probe as one of the two PCR primers. RT-PCR was not substantially more sensitive than DOP-hybridization assay. This procedure also was applicable to coconut cadang-cadang viroid (CCCVd), and oligonucleotide probes designed to be specific for either CTiVd or CCCVd distinguished between these two viroids in coconut leaf extracts. This strategy provides a rapid and specific indexing procedure for the two characterized viroids of coconut palm and will be applicable to further studies on the viroid-like sequences previously reported in tropical monocotyledons.
Publisher: Wiley
Date: 12-1992
Publisher: Wiley
Date: 02-2006
Publisher: Scientific Societies
Date: 2004
DOI: 10.1094/MPMI.2004.17.1.27
Abstract: The six open reading frames of Tomato leaf curl virus (TLCV) were expressed in host Nicotiana species using a Tobacco mosaic virus vector. Each of the genes, except that encoding the viral coat protein, produced a phenotypic effect when expressed in planta, but the corresponding untranslatable mutant genes were asymptomatic. The C1 (Rep) gene invoked a hypersensitive response in Nicotiana clevelandii that restricted the viral construct to sites of infection. Expression of the C2 gene in N. benthamiana produced necrotic lesions on inoculated leaves as well as severe veinal necrosis on systemically infected leaves. This gene was also able to suppress post-transcriptional gene silencing in N. tabacum. C4 induced viruslike symptoms in host plants tested, providing further evidence for the involvement of this gene in symptom expression. Expression of the V1 and C3 genes caused severe stunting of N. benthamiana plants, indicating they may also have a role in symptom development. These results reveal that a complex set of interactions between the TLCV gene products and host factors occurs in planta, and these are discussed in relation to our current understanding of TLCV gene function.
Publisher: Springer Science and Business Media LLC
Date: 11-02-2015
Publisher: Springer Science and Business Media LLC
Date: 18-10-2014
Publisher: Elsevier BV
Date: 2003
Abstract: The 682-nt satellite DNA (sat-DNA) of Tomato leaf curl virus (TLCV) depends on the helper virus for its replication. In contrast to the strict specificity that exists in each geminivirus for its cognate replication associated protein (Rep), TLCV sat-DNA can utilize Rep encoded by distinct geminiviruses. We have used a combination of protein-binding assays and mutagenesis to show that repeat motifs in TLCV and sat-DNA are essential for Rep-binding in vitro. Surprisingly, mutants of TLCV and sat-DNA impaired in their ability to bind TLCV Rep in vitro were infectious in tomato. Thus, in contrast to other geminiviruses reported, TLCV and sat-DNA replication is independent of the high-affinity in vitro Rep binding. These results prompt a reassessment of the current model of geminivirus replication where Rep/DNA interaction is a highly specific step in the initiation of rolling circle replication.
Publisher: Wiley
Date: 02-1993
No related grants have been discovered for John Randles.