ORCID Profile
0000-0002-9274-1433
Current Organisation
Deutsche Forschungsgemeinschaft
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Publisher: Wiley
Date: 06-11-2019
Publisher: Wiley
Date: 27-10-2015
Publisher: Royal Society of Chemistry (RSC)
Date: 2010
DOI: 10.1039/B921246A
Abstract: The intermediate bond forces in ionic liquids are investigated from static quantum chemical calculations at various methods and two basis sets. The experimentally observed red-shift of the donor-proton bond stretching frequency due to a bond elongation is confirmed by all methods. Comparing Hartree-Fock to second-order Møller-Plesset perturbation theory, the Hartree-Fock method gives in many cases an erroneous description of the geometries. Furthermore, the Hartree-Fock interaction energies can deviate up to 60 kJ mol(-1) from Møller-Plesset perturbation theory indicating the importance of dispersion interaction. While the usual trends of decreasing stability or interaction energies with increasing ion sizes are found, the geometries involving hydrogen atoms do not change this order of total interaction energies. Therefore, the hydrogen bond is not the most important interaction for ion pairs with regard to the total interaction energy. On the other hand, the different established analysis methods give rise to hydrogen bonding in several ion pairs. Charge analysis reveals the hydrogen-bonding character of the ion pair and shows, depending on the type of ions combined and further on the type of conformers considered, that a hydrogen bond can be present. The possibility of hydrogen bonding is also shown by an analysis of the frontier orbitals. Calculating potential energy surfaces and observing from this the change in the donor proton bond indicates that regular hydrogen bonds are possible in ion pairs of ionic liquids. Thereby, the maximum of bond elongation exceeds the one of a usual hydrogen bond by far. The more salt-like hydrogen-bonded ion pair [NH(4)][BF(4)] exhibits a steeper maximum than the more ionic liquid like ion pair [EtNH(3)][BF(4)]. The fact that imidazolium-based ionic liquids as [Emim][Cl] can display two faces, hydrogen bonding and purely ionic bonding, points to a disturbing rather than stabilizing role of hydrogen bonding on the interaction of the counterions in imidazolium-based ionic liquids. While geometry and charge analysis provides attributes of weak (blue-shifted) hydrogen bonds, large bond elongations accompanied by red-shifts are obtained for the ion pairs investigated. This can be understood by the simple fact that these imidazolium-based ionic liquid ion pairs constitute weak hydrogen bonds placed between two delocalized charges.
Publisher: Wiley
Date: 10-10-2019
Publisher: Albert-Ludwigs-Universität Freiburg
Date: 2016
DOI: 10.6094/UNIFR/11092
Publisher: Springer Science and Business Media LLC
Date: 12-12-2017
DOI: 10.1038/S41598-017-17600-X
Abstract: Inhibition of protein-protein interactions by small molecules offers tremendous opportunities for basic research and drug development. One of the fundamental challenges of this research field is the broad lack of available lead structures from nature. Here, we demonstrate that modifications of a chromone-based inhibitor of the Src homology 2 (SH2) domain of the transcription factor STAT5 confer inhibitory activity against STAT3. The binding mode of the most potent STAT3 inhibitor Erasin was analyzed by the investigation of structure-activity relationships, which was facilitated by chemical synthesis and biochemical activity analysis, in combination with molecular docking studies. Erasin inhibits tyrosine phosphorylation of STAT3 with selectivity over STAT5 and STAT1 in cell-based assays, and increases the apoptotic rate of cultured NSCLC cells in a STAT3-dependent manner. This ability of Erasin also extends to HCC-827 cells with acquired resistance against Erlotinib, a clinically used inhibitor of the EGF receptor. Our work validates chromone-based acylhydrazones as privileged structures for antagonizing STAT SH2 domains, and demonstrates that apoptosis can be induced in NSCLC cells with acquired Erlotinib resistance by direct inhibition of STAT3.
Publisher: Elsevier
Date: 2015
Publisher: American Chemical Society (ACS)
Date: 04-06-2020
DOI: 10.26434/CHEMRXIV.12416303
Abstract: Histone deacetylases (HDACs) remove acetyl groups from histone proteins and are implicated in gene regulation. They have been recognized as drug targets for treatment of cancer and other human diseases and several inhibitors are already clinically used. Here, we report the design, synthesis, and cellular characterization of a proteolysis-targeting chimera (PROTAC) capable of selectively degrading class I HDACs 1–3 in cells. These novel chemotypes are based on potent and class I-selective macrocyclic tetrapeptide inhibitors, which were linked to thalidomide by modular synthesis, employing copper-catalyzed azide–alkyne “click” chemistry. In HEK293T cells, these conjugates lead to degradation of HDAC1–3 in a time- and concentration-dependent manner. Concomitant histone hyperacetylation without leading to cytotoxic effects was observed by western blot. These chemotypes enable the study of the biological roles of class I HDAC enzymes by short-term temporal deletion. Our compounds represent the first ex les of degraders with demonstrated selectivity for class I HDACs 1–3. Importantly, this study highlights the utility of cyclic peptides as target-binding elements for PROTAC design in general.
Publisher: Wiley
Date: 09-10-2020
Abstract: Inhibition of more than one cancer‐related pathway by multi‐target agents is an emerging approach in modern anticancer drug discovery. Here, based on the well‐established synergy between histone deacetylase inhibitors (HDACi) and alkylating agents, we present the discovery of a series of alkylating HDACi using a pharmacophore‐linking strategy. For the parallel synthesis of the target compounds, we developed an efficient solid‐phase‐supported protocol using hydroxamic acids immobilized on resins (HAIRs) as stable and versatile building blocks for the preparation of functionalized HDACi. The most promising compound, 3 n , was significantly more active in apoptosis induction, activation of caspase 3/7, and formation of DNA damage (γ‐H2AX) than the sum of the activities of either active principle alone. Furthermore, to demonstrate the utility of our preloaded resins, the HAIR approach was successfully extended to the synthesis of a proof‐of‐concept proteolysis‐targeting chimera (PROTAC), which efficiently degrades histone deacetylases.
Publisher: Wiley
Date: 07-08-2012
Publisher: Worldwide Protein Data Bank
Date: 23-03-2016
DOI: 10.2210/PDB5ANQ/PDB
Publisher: American Chemical Society (ACS)
Date: 18-03-2011
DOI: 10.1021/CT100131C
Abstract: A multiscale approach with roots in electronic structure calculations relies on the good description of intermolecular forces. In this study we lay the foundations for a condensed phase treatment based on the electronic structure of hydrogen fluoride on a very high level of theory. This investigation comprises cluster calculations in a static quantum chemical approach employing density functional theory, second order Møller-Plesset perturbation theory (MP2) and the coupled cluster singles, doubles with perturbative triples method in combination with several basis sets as well as at the complete basis set limit. The clusters we considered are up to 12 monomer units large and consist of ring and chain structures. We find a good agreement of the intramolecular distance obtained from the MP2 approach and the largest basis set. The binding energy of the hydrogen fluoride dimer calculated from coupled cluster at the basis set limit agrees excellently with experiment, whereas the calculated frequencies at all levels agree reasonably well with different experimental values. Large cooperative effects are observed for the ring structures as compared to the chain clusters. The energy per monomer unit indicates the most stable structures to be the ring clusters.
Publisher: Wiley
Date: 04-09-2015
Abstract: The JumonjiC-domain-containing histone demethylase 2A (JMJD2A, KDM4A) is a key player in the epigenetic regulation of gene expression. Previous publications have shown that both elevated and lowered enzyme levels are associated with certain types of cancer, and therefore the definite role of KDM4A in oncogenesis remains elusive. To identify a novel molecular starting point with favorable physicochemical properties for the investigation of the physiological role of KDM4A, we screened a number of molecules bearing an iron-chelating moiety by using two independent assays. In this way, we were able to identify 2-(1H-tetrazol-5-yl)acetohydrazide as a novel fragment-like lead structure with low relative molecular mass (Mr =142 Da), low complexity, and an IC50 value of 46.6 μm in a formaldehyde dehydrogenase (FDH)-coupled assay and 2.4 μm in an antibody-based assay. Despite its small size, relative selectivity against two other demethylases could be demonstrated for this compound. This is the first ex le of a tetrazole group as a warhead in JMJD demethylases.
Publisher: Wiley
Date: 09-08-2016
Abstract: Overexpression of the histone lysine demethylase KDM4A, which regulates H3K9 and H3K36 methylation states, has been related to the pathology of several human cancers. We found that a previously reported hydroxamate-based histone deacetylase (HDAC) inhibitor (SW55) was also able to weakly inhibit this demethylase with an IC50 value of 25.4 μm. Herein we report the synthesis and biochemical evaluations, with two orthogonal in vitro assays, of a series of derivatives of this lead structure. With extensive chemical modifications on the lead structure, also by exploiting the versatility of the radical arylation with aryldiazonium salts, we were able to increase the potency of the derivatives against KDM4A to the low-micromolar range and, more importantly, to obtain demethylase selectivity with respect to HDACs. Cell-permeable derivatives clearly showed a demethylase-inhibition-dependent antiproliferative effect against HL-60 human promyelocytic leukemia cells.
Publisher: American Chemical Society (ACS)
Date: 09-07-2019
DOI: 10.1021/ACSCHEMBIO.9B00289
Abstract: Fe(II)- and 2-oxoglutarate (2OG)-dependent JumonjiC domain-containing histone demethylases (JmjC KDMs) are "epigenetic eraser" enzymes involved in the regulation of gene expression and are emerging drug targets in oncology. We screened a set of clinically used iron chelators and report that they potently inhibit JMJD2A (KDM4A)
Publisher: American Chemical Society (ACS)
Date: 16-03-2011
DOI: 10.1021/CT200074C
Abstract: Treating the bulk phase with high-level ab initio methods, such as coupled cluster, is a nontrivial task because of the computational costs of these electronic structure methods. In this part of our hydrogen fluoride study we make use of the quantum cluster equilibrium method, which employs electronic structure input of small clusters and combines it with simple statistical mechanics in order to describe condensed phase phenomena. If no parameter adjustment is applied, then the lower quantum chemical methods, such as density functional theory in conjunction with the generalized gradient approximation, provide wrong results in accordance with the description of the strength of the interaction in the clusters. While density functional theory describes the liquid phase too dense due to overbinding of the clusters, the coupled cluster method and the perturbation theory at the complete basis set limit agree well with experimental observations. If we allow the two parameters in the quantum cluster equilibrium method to vary, then these are able to compensate the overbinding, thereby leading to very good agreement with experiment. Correlated methods in combination with small basis sets giving rise to too weakly bound clusters cannot reach this accuracy even if the parameters are flexible. Only at the complete basis set limit, the performance of the correlated methods is again excellent.
Location: France
Start Date: 2018
End Date: 2020
Funder: Deutsche Forschungsgemeinschaft
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