ORCID Profile
0000-0001-6451-0307
Current Organisations
CSIRO
,
Sydney Institute of Marine Science
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Marine and Estuarine Ecology (incl. Marine Ichthyology) | Environmental Rehabilitation (excl. Bioremediation) | Ecosystem Function | Environmental Science and Management |
Coastal and Estuarine Flora, Fauna and Biodiversity | Rehabilitation of Degraded Coastal and Estuarine Environments | Ecosystem Assessment and Management of Marine Environments
Publisher: Elsevier BV
Date: 11-2019
DOI: 10.1016/J.SCITOTENV.2019.07.268
Abstract: Intermittently Closed and Open Lakes and Lagoons (ICOLLS) are important coastal systems that are periodically separated from the ocean by a sand barrier or a berm. In urban ICOLLs, continuous inputs of organic material and nutrients into coastal lagoons are contributing to eutrophic conditions that, together with natural environmental factors have implications for the resident sediment bacterial communities. We used molecular tools to investigate the ecological communities of four ICOLLs Narrabeen, Dee Why, Curl Curl and Manly in Sydney, Australia, which have been subjected to increasing pressure from anthropogenic activities over the last century. We used targeted gene sequencing of the prokaryotic 16S ribosomal RNA gene to describe the bacterial ersity and community structure and discuss differences with respect to environmental factors at the ICOLL scale (e.g. size, shape, normalised N loading) and site scale (e.g. water and sediment quality) within each lagoon. Due to differences in hydrological patterns, we expected that sediment bacterial communities would be more heterogenous in displacement-dominated lagoons (Curl Curl and Manly) than the mixing-dominated lagoons (Narrabeen and Dee Why). Interestingly, we did not find strong relationships between the main bacterial groups and distance from the lagoon entrance (used as a proxy for salinity and silt) in the displacement-dominated lagoons. Moreover, we found that α ersity was highest in Narrabeen and Manly lagoons despite differences in lagoon size and shape. Furthermore, while bacterial community structure was similar in Curl Curl and Dee Why, communities in Manly and Narrabeen differed along temperature/TOC and salinity/silt gradients respectively. In Manly lagoon, we found relatively more anaerobic bacteria such as Epsilonbactereota which is involved in the oxidation and reduction of sulfur compounds. Moreover, we identified several bacterial taxa (including sulfur metabolising Chlorobiaceae) related to increasing TOC that could be investigated further as potential indicators of excess enrichment.
Publisher: Springer Science and Business Media LLC
Date: 08-2016
Publisher: IOP Publishing
Date: 2018
Publisher: Elsevier BV
Date: 10-2009
DOI: 10.1016/J.JIP.2009.08.004
Abstract: No diseases affecting reproductive performance have been previously reported in freshwater crayfishes. This study aims to characterise one reproductive system abnormality found in males of Cherax quadricarinatus reared in captivity. Fifteen adult males of C. quadricarinatus (70-110 g) were purchased from San Mateo S.A. farm (Entre Ríos, Argentina) each season during 2007. Macroscopic analysis showed that 26.6% of the animals sacrificed in winter presented brownish distal vasa deferentia. Histological analysis showed different levels of structural abnormality in the epithelium of the vasa deferentia and spermatophore. Granular and hyaline haemocytes were identified within the vasa deferentia but no significant differences were found in the sperm count between normal and brownish vas deferens. Histological analysis of the crayfishes sacrificed in autumn also showed these modifications in 22% of the animals, however, they did not show the brownish colour under macroscopic analysis. The similarities between the male reproductive system syndrome in shrimps and the abnormalities found in C. quadricarinatus are notable. An unspecific response to thermic stress is a possible explanation of these structural alterations.
Publisher: Elsevier BV
Date: 10-2009
Publisher: Annual Reviews
Date: 03-01-2021
DOI: 10.1146/ANNUREV-MARINE-032020-020015
Abstract: Urban and periurban ocean developments impact 1.5% of the global exclusive economic zones, and the demand for ocean space and resources is increasing. As we strive for a more sustainable future, it is imperative that we better design, manage, and conserve urban ocean spaces for both humans and nature. We identify three key objectives for more sustainable urban oceans: reduction of urban pressures, protection and restoration of ocean ecosystems, and support of critical ecosystem services. We describe an array of emerging evidence-based approaches, including greening grayinfrastructure, restoring habitats, and developing biotechnologies. We then explore new economic instruments and incentives for supporting these new approaches and evaluate their feasibility in delivering these objectives. Several of these tools have the potential to help bring nature back to the urban ocean while also addressing some of the critical needs of urban societies, such as climate adaptation, seafood production, clean water, and recreation, providing both human and environmental benefits in some of our most impacted ocean spaces.
Publisher: Elsevier BV
Date: 09-2018
Publisher: Wiley
Date: 04-2022
DOI: 10.1002/ECS2.4021
Abstract: Habitat interactions play key roles in regulating bio ersity and ecosystem functions. This is particularly important in aquatic ecosystems, where the flow of water facilitates exchanges of energy and matter. Oyster reefs, a highly degraded habitat globally and a key focus for restoration efforts, can reduce water movement and facilitate the deposition of particles around them, affecting nutrient cycling in surrounding sediments. The effects of these reefs on sediment infauna taxonomic and functional bio ersity, however, remain unknown. We s led sediments at increasing distances from reefs at three estuaries to evaluate the relationships between proximity to oyster reefs and composition and functionality of infaunal communities and explored the potential mechanisms behind those relationships. Sediments close to oyster reefs had consistently greater amounts of labile organic matter, which in turn was positively related to the number of taxa and total abundance of infauna. Also, the functional traits of infauna, such as bioturbation and feeding modes, were related to proximity to reefs, but they were variable between estuaries indicating the importance of background estuarine environmental conditions. These results suggest that habitat linkages between oyster reefs and sediments are important in regulating taxonomic bio ersity, while functional bio ersity seems to be driven by processes operating at larger scales. Given burgeoning restoration initiatives worldwide, particularly those of oyster reefs, incorporating seascape interactions can help inform recovery of bio ersity and functions beyond the target habitat at the seascape level, which is often overlooked.
Publisher: CSIRO Publishing
Date: 19-07-2023
DOI: 10.1071/MF22268
Abstract: Context Gamay is a coastal waterway of immense social, cultural and ecological value. Since European settlement, it has become a hub for industrialisation and human modification. There is growing desire for ecosystem-level management of urban waterways, but such efforts are often challenged by a lack of integrated knowledge. Aim and methods We systematically reviewed published literature and traditional ecological knowledge (TEK), and consulted scientists to produce a review of Gamay that synthesises published knowledge of Gamay’s aquatic ecosystem to identify knowledge gaps and future research opportunities. Key results We found 577 published resources on Gamay, of which over 70% focused on ecology. Intertidal rocky shores were the most studied habitat, focusing on invertebrate communities. Few studies considered multiple habitats or taxa. Studies investigating cumulative human impacts, long-term trends and habitat connectivity are lacking, and the broader ecological role of artificial substrate as habitat in Gamay is poorly understood. TEK of Gamay remains a significant knowledge gap. Habitat restoration has shown promising results and could provide opportunities to improve affected habitats in the future. Conclusion and implications This review highlights the extensive amount of knowledge that exists for Gamay, but also identifies key gaps that need to be filled for effective management.
Publisher: Elsevier BV
Date: 04-2022
DOI: 10.1016/J.SCITOTENV.2021.152689
Abstract: The terrestrial, freshwater and marine realms all provide essential ecosystem services in urban environments. However, the services provided by each realm are often considered independently, which ignores the synergies between them and risks underestimating the benefits derived collectively. Greater research collaboration across these realms, and an integrated approach to management decisions can help to support urban developments and restoration projects in maintaining or enhancing ecosystem services. The aim of this paper is to highlight the synergies and trade-offs among ecosystem services provided by each realm and to offer suggestions on how to improve current practice. We use case studies to illustrate the flow of services across realms. In our call to better integrate research and management across realms, we present a framework that provides a 6-step process for conducting collaborative research and management with an Australian perspective. Our framework considers unifying language, sharing, and understanding of desired outcomes, conducting cost-benefit analyses to minimise trade-offs, using multiple modes of communication for stakeholders, and applying research outcomes to inform regulation. It can be applied to improve collaboration among researchers, managers and planners from all realms, leading to strategic allocation of resources, increased protection of urban natural resources and improved environmental regulation with broad public support.
Publisher: Elsevier BV
Date: 2019
DOI: 10.1016/J.SCITOTENV.2018.08.134
Abstract: Burgeoning populations and the increasing concentration of humans in urban areas have resulted in extensive and increasing degradation and destruction of natural ecosystems. The multitude of impacts and their drivers in urban areas across realms are often studied at local scales, but there is regularly a mismatch between the spatial extent of the impacts and that of the pressures driving those impacts. For ex le, most human activities occur on land and therefore disturb terrestrial habitats (intrinsic impacts), but their impacts can also extend to the atmosphere and aquatic realms (extrinsic impacts). Management of urban impacts is often designed at local scales and aims to control local pressures, mostly overlooking pressures originating outside the 'managed' area. This is often due to jurisdictional barriers but can also result from the lack of knowledge and recognition among scientists and managers of larger scale pressures. With the aim to highlight the importance of ameliorating extrinsic impacts for holistic management of urban areas, this paper discusses the range and extent of extrinsic impacts produced by the most common pressures in urban environments. We discuss that the terrestrial realm is a 'net-donor' of impacts, as most human activities occur on land and the resulting impacts are transferred to aquatic and atmospheric realms. However, activities in aquatic realms can result in impacts on land. We conclude that, to achieve effective management strategies, greater collaboration is needed between scientists and managers focussing on different realms and regions and we present suggestions for approaches to achieve this.
Publisher: Public Library of Science (PLoS)
Date: 22-01-2014
Publisher: Springer Science and Business Media LLC
Date: 21-10-2021
Publisher: Springer Science and Business Media LLC
Date: 27-09-2015
Publisher: Elsevier BV
Date: 11-2019
Publisher: Elsevier BV
Date: 2021
Publisher: Springer Science and Business Media LLC
Date: 18-06-2016
Publisher: Elsevier BV
Date: 11-2023
Publisher: Elsevier BV
Date: 05-2023
Publisher: Elsevier BV
Date: 08-2018
DOI: 10.1016/J.MARENVRES.2018.05.004
Abstract: Assessments of human impacts on natural habitats often focus on the abundance of component species, yet physiological and/or sub-lethal effects of stressors on functional attributes may be equally important to consider. Here we evaluated how artificial structures, an integral part of urbanisation in the marine environment, affects key functional properties of the habitat-forming kelp Ecklonia radiata. Given that stressors rarely occur in isolation, we assessed the effects of infrastructure across an urbanised estuary. Estuaries are ideal for studying how multiple anthropogenic and natural stressors influence potential impacts of infrastructure on habitat-forming species because these habitats usually face a wide range and levels of stressors. Here, we compared the abundance of habitat-forming macro-algae as well as the growth, erosion and photosynthetic activity of kelp in artificial and natural habitats across one of the largest urbanised estuaries in the word - Sydney Harbour. We predicted that effects of artificial structures on functional attributes of kelps would be stronger in the inner area of the Harbour, characterised by higher levels of human impacts and low flushing. Contrary to our predictions, we found that effects of infrastructure were consistent across the estuary, regardless of the ecological footprint caused by human activities or natural environmental gradients. When differences were observed between areas of the estuary, they mostly occurred independently of impacts of substrate type. Importantly, we found lower erosion rates of kelp on pilings than on reefs, likely resulting in lower production of detritus in estuaries where natural reefs are degraded or lost and pilings added. Such impacts have important implications for the connectivity among coastal habitats and secondary productivity in adjacent and remote habitats, which are highly dependent on the exportation of kelp detritus. Our study is the first to assess potential functional consequences of urbanisation through physiological and/or biomechanical effects on habitat-formers, an often overlooked mechanism of environmental impact on ecosystem functioning.
Publisher: Wiley
Date: 05-01-2023
Abstract: The influence of habitat complexity on bio ersity is a central theme in ecology, with many studies reporting positive relationships. Reconciliation approaches in urbanised areas, such as eco‐engineering, have increasingly focused on ‘re‐building’ the complexity of degraded and/or homogenised habitats to support bio ersity. Yet, the effects of increasing complexity and bio ersity on ecological functions are rarely measured. We assessed how increasing the physical and/or biogenic complexity of habitats affects the net primary productivity (NPP) and gross primary productivity (GPP), community respiration and nutrient cycling (specifically dissolved inorganic phosphorus and nitrogen) of intertidal sessile marine communities at three sites. We manipulated physical complexity using two types of settlement tiles: ‘complex’, with crevices and ridges, and ‘flat’. We increased biogenic complexity on half the replicates of each tile type by seeding with oysters. Increased physical and biogenic complexity resulted in greater sessile species richness at all sites. Although many variables assessed varied with sites and time of measurements, overall, GPP and NPP were greater on flat tiles than on complex ones. These patterns were not explained by differences in the total surface area of tiles. Daily flux rates of dissolved inorganic phosphorus had a significant positive relationship with biogenic complexity. There were no effects of biogenic or physical complexity on the net fluxes of dissolved inorganic nitrogen. Effects of habitat complexity on the productivity and nutrient cycling of marine sessile communities were largely unrelated to ersity measures, such as richness or abundance of key taxa and functional groups. Synthesis and applications . Eco‐engineering practices that manipulate habitat complexity might benefit from explicit functional targets that also consider associated ecosystem services, as we found that under some conditions there is a trade‐off between bio ersity and functional targets. Our results suggest that increasing habitat complexity has a positive effect on sessile species richness, but not necessarily on productivity (GPP and NPP). The species pool available as well as light availability is likely to mediate effects of complexity on assemblages, so local environment needs to be a key consideration when designing interventions.
Publisher: Wiley
Date: 27-07-2017
Publisher: PeerJ
Date: 22-05-2023
DOI: 10.7717/PEERJ.15426
Abstract: Assessing fish assemblages in subtidal and intertidal habitats is challenging due to the structural complexity of many of these systems. Trapping and collecting are regarded as optimal ways to s le these assemblages, but this method is costly and destructive, so researchers also use video techniques. Underwater visual census and baited remote underwater video stations are commonly used to characterise fish communities in these systems. More passive techniques such as remote underwater video (RUV) may be more appropriate for behavioural studies, or for comparing proximal habitats where the broad attraction caused by bait plumes could be an issue. However, data processing for RUVs can be time consuming and create processing bottlenecks. Here, we identified the optimal subs ling method to assess fish assemblages on intertidal oyster reefs using RUV footage and bootstrapping techniques. We quantified how video subs ling effort and method (systematic vs random) affect the accuracy and precision of three different fish assemblage metrics species richness and two proxies for the total abundance of fish, MaxN T and MeanCount T , which have not been evaluated previously for complex intertidal habitats. Results suggest that MaxN T and species richness should be recorded in real time, whereas optimal s ling for MeanCount T is every 60 s. Systematic s ling proved to be more accurate and precise than random s ling. This study provides valuable methodology recommendations which are relevant for the use of RUV to assess fish assemblages in a variety of shallow intertidal habitats.
Publisher: Elsevier BV
Date: 07-2017
Publisher: Elsevier BV
Date: 2023
DOI: 10.1016/J.ENVPOL.2022.120614
Abstract: Over the last century, human activities have increased the amount of nutrients inputs to terrestrial and aquatic ecosystems. These activities have altered nitrogen (N) and phosphorus (P) cycling, causing substantial changes in ecosystem function such as provision of clean air and water. Strategies that reduce and remove excess nutrients are urgently needed to remediate impacted systems. Reef-forming shellfish (oysters and mussels) can play a crucial role in nutrient cycling, particularly in N removal from aquatic systems by providing substrate for microbial colonisation and enhancing microbial denitrification in the surrounding sediments. However, the potential for shellfish to enhance nutrient cycling (and denitrification) will likely vary spatially and in response to several environmental factors. Here, we used 1) a qualitative analysis to review nutrient processes occurring on shellfish and 2) a meta-analysis to evaluate the influence of shellfish on benthic metabolism and nutrient cycling in surrounding sediments, and how that is influenced by environmental factors such as grain size, seasonality, water body type, and tidal position. Overall, we found that shellfish increased oxygen consumption, with consequent release of ammonia (NH
Publisher: Wiley
Date: 31-05-2022
Abstract: Many important ecosystem functions are underpinned by below‐ground bio ersity and processes. Marine sediments, one of the most abundant habitats on earth, are essential to the mineralisation of organic matter. However, they are increasingly polluted by urban activities leading to the loss of bio ersity and the functions they provide. While traditional sediment remediation strategies are focussed on microbial and engineering solutions, we propose that the reintroduction of below‐ground ecosystem engineers (bioturbators) is important to rehabilitate polluted sediments and drive recovery of their functions in urban coastal ecosystems. We tested this notion by introducing bioturbators to nutrient polluted sediments to assess their survival, as well as their capacity to drive bio ersity and oxygenation and their potential to remediate nutrient pollution. Polychaete worms Diopatra aciculata and clams Katelysia sp. were added to mesocosms (ex‐situ), and the worms also added to experimental plots in‐situ. Potential for remediation was assessed with measures of nutrient content. All animals survived when introduced to polluted sediments and showed no evidence of sub‐lethal effects. Worms oxygenated sediments and reduced organic matter content by up to 50% in‐situ. The worms also drove shifts in the receiving communities at all locations and increased the number of taxa at one location. On the other hand, the effects of clams were variable, showing opposite effects in organic matter content at different sites and levels of pollution. Synthesis and applications . Global seafloor habitats are becoming increasingly degraded and novel strategies that combine bio ersity restoration with remediation are urgently needed to return function. Tube‐building bioturbators can stimulate nutrient processing in sediments proving multiple functional outcomes, but these effects are dependent on the receiving environment. In areas with medium levels of pollution, they can kick‐start recovery in a feedback loop whereby bioturbation increases oxygenation and nutrient remediation, shifting sediment bio ersity and contributing to further recovery. This can drive long‐term changes in sediment communities, particularly in urban areas where unvegetated sediments are conspicuous.
Publisher: Wiley
Date: 18-05-2022
DOI: 10.1111/REC.13670
Abstract: Population characteristics (e.g. density and body sizes) of foundation species can affect their own persistence and provisioning of ecosystem functions. Understanding the drivers of population characteristics of foundation species at multiple spatial scales is therefore critical for maximizing ecosystem functions of restored habitats. We analyzed variation in population characteristics (densities, 95th percentile, and median lengths of live oysters) of the Sydney rock oyster, Saccostrea glomerata , on remnant oyster reefs at regional scales (among three estuaries) along an approximately 250 km of coastline in New South Wales, Australia. We then analyzed how population characteristics were further related to spatial attributes at smaller spatial scales including within‐patches (rugosity, distance to patch‐edge, and elevation), whole‐patches (size and shape), and among‐patch (connectivity) within each estuary. The densities and body sizes of S. glomerata were related to spatial attributes occurring within‐patch (e.g. elevation), whole‐patch (e.g. shape), and landscape (i.e. connectivity) scales, but these relationships varied among estuaries. The greatest variation in oyster density and size occurred at regional scales, suggesting that processes acting at larger spatial scales (e.g. water quality and/or climate) set the context for smaller scale influences on oyster characteristics. Our results highlight the potential importance of incorporating site‐specific, spatial attributes in the design of restored oyster reefs to maximize ecosystem services and functions provided by restoration efforts.
Publisher: Springer Science and Business Media LLC
Date: 31-08-2020
Publisher: Elsevier BV
Date: 03-2017
DOI: 10.1016/J.JENVMAN.2016.12.039
Abstract: Urbanisation in terrestrial systems has driven architects, planners, ecologists and engineers to collaborate on the design and creation of more sustainable structures. Ex les include the development of 'green infrastructure' and the introduction of wildlife corridors that mitigate urban stressors and provide positive ecological outcomes. In contrast, efforts to minimise the impacts of urban developments in marine environments have been far more restricted in their extent and scope, and have often overlooked the ecological role of the built environment as potential habitat. Urban foreshore developments, i.e. those built on the interface of intertidal and/or subtidal zones, have the potential to incorporate clear multi-functional outcomes, by supporting novel ecosystems. We present a step-by-step eco-engineering framework for 'building blue' that will allow coastal managers to facilitate planning and construction of sustainable foreshore developments. Adopting such an approach will incorporate ecological principles, thereby mitigating some of the environmental impacts, creating more resilient urban infrastructure and environments, and maximising benefits to the multiple stakeholders and users of marine urban waterfronts.
Publisher: Elsevier BV
Date: 07-2018
DOI: 10.1016/J.JENVMAN.2018.03.058
Abstract: Historical ecology can teach us valuable lessons on the processes and drivers of environmental change that can inform future monitoring priorities and management strategies. Environmental data to study environmental history, however, is often absent or of low quality. Even when studying changes occurring during the last few decades, monitoring efforts are scarce due to logistical and cost limitations, leaving large areas unassessed. The aim of this study is to evaluate the use of estuarine water colour as an indicator of historical environmental change in catchments. Water colour change was assessed in estuaries in Australia from 1987 to 2015 using satellite remote sensing. Random points were selected for each estuary and applied to the Australian Geoscience Data Cube (based on Landsat images) to obtain reflectance data through time. We propose a framework where (i) water colour is used to detect historical changes in catchments using generalised additive models, (ii) possible stressors and pressures driving those changes are evaluated using other available historical data, and (iii) lessons learned inform appropriate monitoring and management actions. This framework represents a novel approach to generate historical data for large-scale assessments of environmental change at catchment level, even in poorly studied areas.
Publisher: Wiley
Date: 09-03-2021
DOI: 10.1002/FEE.2323
Location: Australia
Start Date: Start date not available
End Date: End date not available
Funder: Australian Research Council
View Funded ActivityStart Date: 03-2020
End Date: 09-2023
Amount: $330,000.00
Funder: Australian Research Council
View Funded Activity