ORCID Profile
0000-0002-7951-4818
Current Organisations
University of Amsterdam
,
University of Wisconsin Milwaukee
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Publisher: Elsevier BV
Date: 10-2022
DOI: 10.1016/J.SCITOTENV.2022.156241
Abstract: Overgrazing directly and indirectly affects soil microorganisms, which can have feedback effects on plant growth. Little is known about the root metabolites plants produce and whether they recruit beneficial microbes in response to overgrazing. Here, we used the dominant grassland species Leymus chinensis to explore correlations between root metabolites and the rhizosphere microbiome shaped by long-term overgrazing, which was determined by using LC-MS technology and high-throughput sequencing. In total, 839 metabolites were detected, with 41 significantly higher and 3 significantly lower in overgrazing versus grazing exclusion plots. The rhizosphere bacterial community was changed, but the fungal community was not altered. Moreover, 11 bacterial orders were found only in the overgrazed s les, and these showed close relationships to root metabolites and certain soil properties. Of these, Latescibacterales, B10-SB3A, and Nitrosococcales are known to be involved in growth promotion, C and N metabolism, respectively. In addition, root metabolites play an important role in mediating root-fungi interactions. The beneficial fungal orders Agaricales and Sordariales have a tread to be higher maybe due to root metabolites, mainly facilitate nutrient absorption and protect organic carbon in the soil, respectively. Our results indicate that grassland plants send metabolic signals to recruit key beneficial bacteria and stabilize fungal communities to alleviate grazing-induced stress in typical grassland ecosystems.
Publisher: Wiley
Date: 29-04-2019
Publisher: Wiley
Date: 26-11-2018
Publisher: Wiley
Date: 08-10-2018
Publisher: Elsevier BV
Date: 11-2019
Publisher: Springer Science and Business Media LLC
Date: 07-10-2020
DOI: 10.1186/S42523-020-00055-3
Abstract: Insect-associated microorganisms can provide a wide range of benefits to their host, but insect dependency on these microbes varies greatly. The origin and functionality of insect microbiomes is not well understood. Many caterpillars can harbor symbionts in their gut that impact host metabolism, nutrient uptake and pathogen protection. Despite our lack of knowledge on the ecological factors driving microbiome assemblages of wild caterpillars, they seem to be highly variable and influenced by diet and environment. Several recent studies have shown that shoot-feeding caterpillars acquire part of their microbiome from the soil. Here, we examine microbiomes of a monophagous caterpillar ( Tyria jacobaeae ) collected from their natural host plant ( Jacobaea vulgaris ) growing in three different environments: coastal dunes, natural inland grasslands and riverine grasslands, and compare the bacterial communities of the wild caterpillars to those of soil s les collected from underneath each of the host plants from which the caterpillars were collected. The microbiomes of the caterpillars were dominated by Proteobacteria, Actinobacteria, Firmicutes and Bacteroidetes. Only 5% of the total bacterial ersity represented 86.2% of the total caterpillar’s microbiome. Interestingly, we found a high consistency of dominant bacteria within the family Burkholderiaceae in all caterpillar s les across the three habitats. There was one licon sequence variant belonging to the genus Ralstonia that represented on average 53% of total community composition across all caterpillars. On average, one quarter of the caterpillar microbiome was shared with the soil. We found that the monophagous caterpillars collected from fields located more than 100 km apart were all dominated by a single Ralstonia . The remainder of the bacterial communities that were present resembled the local microbial communities in the soil in which the host plant was growing. Our findings provide an ex le of a caterpillar that has just a few key associated bacteria, but that also contains a community of low abundant bacteria characteristic of soil communities.
Publisher: Elsevier
Date: 2018
Publisher: Cold Spring Harbor Laboratory
Date: 16-10-2020
DOI: 10.1101/2020.10.15.340620
Abstract: Plant-soil feedbacks are shaped by microbial legacies previous plants leave in the soil. We tested the persistence of such soil legacies after subsequent colonization by the same or other plant species, and whether the microbiome created by the previous plant explains current plant growth. Legacies of previous plants were detectable in soil fungal communities several months after their removal while concomitantly the effect of the current plant lified in time. Remarkably, bacterial legacies faded away rapidly in the soil and bacterial communities were selected strongly by plant currently growing in the soil. Both fungal and bacterial legacies wrought by the previous plant were conserved inside the root endophytic compartment of the current plant and these endophytes affected significantly the plant growth. Hence, microbial soil legacies present at the time of plant establishment play a vital role in shaping plant growth even as the composition gradually changes in the soil after subsequent plant colonization, as they are taken up as endophytes in the plant. This suggests that plant-soil feedbacks may be partly mediated by a relatively stable endophytic community acquired in early ontogeny while the effects of previous plants detected on soil microbiomes vary between organisms studied. We further show that plants growing in their own soils harbor different endophytic microbiomes than plants growing in soils with legacy of other plants and that especially grasses are sensitive to species specific fungal pathogens while all plant species have less endophytic Streptomycetes when growing in their own soil. In conclusion, we show that soil legacies wrought by previous plants can remain present in the soils and inside the roots for months, even when subsequent plants colonize the soil and that these legacies also substantially modulate the plant growth.
Publisher: Springer Science and Business Media LLC
Date: 17-08-2020
DOI: 10.1007/S11829-020-09775-4
Abstract: Plant–soil feedbacks of plants that are exposed to herbivory have been shown to differ from those of plants that are not exposed to herbivores. Likely, this process is mediated by jasmonic acid (JA) and salicylic acid (SA) defense pathways, which are induced by aboveground herbivory. Furthermore, exogenous application of these phytohormones to plants alters belowground communities, but whether this changes plant–soil feedbacks in natural systems is unknown. We applied exogenous sprays of JA and SA in idually and in combination to field plots in a restored grassland. Control plots were sprayed with demineralized water. After three repeated application rounds, we transplanted seedlings of the plant–soil feedback model plant Jacobaea vulgaris as phytometer plants to test the effects of potential phytohormone-mediated changes in the soil, on plant performance during the response phase. We further measured how exogenous application of phytohormones altered plant-related ecosystem characteristics (plot-level) soil chemistry, plot productivity, insect communities and predation. Biomass of the phytometer plants only co-varied with plot productivity, but was not influenced by phytohormone applications. However, we did observe compound-specific effects of SA application on insect communities, most notably on parasitoid attraction, and of JA application on soil nitrogen levels. Although we did not find effects on plant–soil feedbacks, the effects of exogenous application of phytohormones did alter other ecosystem-level processes related to soil nutrient cycling, which may lead to legacy effects in the longer term. Furthermore, exogenous application of phytohormones led to altered attraction of specific insect groups.
Publisher: Wiley
Date: 09-2020
DOI: 10.1002/ECS2.3246
Publisher: Springer Science and Business Media LLC
Date: 09-07-2022
DOI: 10.1007/S11104-022-05590-3
Abstract: Insect herbivory affects plant growth, nutrient and secondary metabolite concentrations and litter quality. Changes to litter quality due to insect herbivory can alter decomposition, with knock on effects for plant growth mediated through the plant-litter-soil feedback pathway. Using a multi-phase glasshouse experiment, we tested how changes in shoot and root litter quality of fast- and slow-growing grass caused by insect herbivores affect the performance of response plants in the soil in which the litter decomposed. We found that insect herbivory resulted in marginal changes to litter quality and did not affect growth when plants were grown with fast- versus slow-growing litter. Overall, presence of litter resulted in reduced root and shoot growth and this effect was significantly more negative in shoots versus roots. However, this effect was minimal, with a loss of c. 1.4% and 3.1% dry weight biomass in roots versus shoots, respectively. Further, shoot litter exposed to insect herbivory interacted with response plant identity to affect root growth. Our results suggest that whether litter originates from plant tissues exposed to insect herbivory or not and its interaction with fast- versus slow-growing grasses is of little importance, but species-specific responses to herbivory-conditioned litter can occur. Taken collectively, the overall role of the plant-litter-soil feedback pathway, as well as its interaction with insect herbivory, is unlikely to affect broader ecosystem processes in this system.
Publisher: Wiley
Date: 25-08-2020
Publisher: Wiley
Date: 31-12-2019
DOI: 10.1111/GCB.14904
Abstract: Plant traits—the morphological, anatomical, physiological, biochemical and phenological characteristics of plants—determine how plants respond to environmental factors, affect other trophic levels, and influence ecosystem properties and their benefits and detriments to people. Plant trait data thus represent the basis for a vast area of research spanning from evolutionary biology, community and functional ecology, to bio ersity conservation, ecosystem and landscape management, restoration, biogeography and earth system modelling. Since its foundation in 2007, the TRY database of plant traits has grown continuously. It now provides unprecedented data coverage under an open access data policy and is the main plant trait database used by the research community worldwide. Increasingly, the TRY database also supports new frontiers of trait‐based plant research, including the identification of data gaps and the subsequent mobilization or measurement of new data. To support this development, in this article we evaluate the extent of the trait data compiled in TRY and analyse emerging patterns of data coverage and representativeness. Best species coverage is achieved for categorical traits—almost complete coverage for ‘plant growth form’. However, most traits relevant for ecology and vegetation modelling are characterized by continuous intraspecific variation and trait–environmental relationships. These traits have to be measured on in idual plants in their respective environment. Despite unprecedented data coverage, we observe a humbling lack of completeness and representativeness of these continuous traits in many aspects. We, therefore, conclude that reducing data gaps and biases in the TRY database remains a key challenge and requires a coordinated approach to data mobilization and trait measurements. This can only be achieved in collaboration with other initiatives.
Publisher: Springer Science and Business Media LLC
Date: 11-02-2023
DOI: 10.1007/S11104-023-05908-9
Abstract: Plants condition the soil in which they grow, thereby altering the performance of subsequent plants growing in this soil. This phenomenon, known as plant-soil feedback (PSF), has garnered increasing interest. Experiments are moving from single species soil pairings in the glasshouse to community-level field trials. Consequently, our knowledge of the role PSF plays in shaping ecosystem functions has advanced. However, knowledge gaps remain. Here, we explore intrinsic and extrinsic abiotic and biotic drivers of PSF such as maternal effects, plant functional traits, self-DNA, plant-plant competition, herbivory, interactions between soil organisms, temperature, drought, flooding, greenhouse gases, (micro)nutrients, plant-litter-soil feedback and priority effects. These drivers have begun to feature in experiments, thereby increasing our mechanistic understanding of PSF. Nonetheless, many of these topics have received insufficient coverage to determine general principles across larger temporal and spatial scales. Further, conflicting terminology has excluded PSF studies from reviews and meta-analyses. We review terms such as soil sickness, Janzen-Connell hypothesis, soil-related invasive species work, soil legacies, allelopathy and soil-related succession that overlap with PSF but are generally not named as such. Holistic experimental designs that consider the continual reciprocal feedback between the extrinsic environment, plants and soil, as well as the unification of terminologies are necessary if we are to realise the full potential of PSF for understanding and steering ecosystem processes. Here, we compile outstanding questions related to PSF research that emphasis the aforementioned topics and suggest ways to incorporate them into future research in order to advance plant-soil ecology.
Publisher: Springer Science and Business Media LLC
Date: 05-08-2022
Publisher: Frontiers Media SA
Date: 22-10-2019
Publisher: Wiley
Date: 07-04-2020
DOI: 10.1111/ELE.13497
Publisher: American Society for Microbiology
Date: 24-12-2019
Abstract: Our findings highlight how soil fungal and bacterial communities respond to time, season, and plant species identity. We found that succession shapes the soil bacterial community, while plant species and the type of plant species that grows in the soil drive the assembly of soil fungal communities. Future research on the effects of plants on soil microbes should take into consideration the relative roles of both time and plant growth on creating soil legacies that impact future plants growing in the soil. Understanding the temporal (in)stability of microbial communities in soils will be crucial for predicting soil microbial composition and functioning, especially as plant species compositions will shift with global climatic changes and land-use alterations. As fungal and bacterial communities respond to different environmental cues, our study also highlights that the selection of study organisms to answer specific ecological questions is not trivial and that the timing of s ling can greatly affect the conclusions made from these studies.
Publisher: Elsevier BV
Date: 12-2021
Location: United Kingdom of Great Britain and Northern Ireland
No related grants have been discovered for Jonathan De Long.