ORCID Profile
0000-0002-4869-035X
Current Organisations
University of Western Australia
,
Pacific Northwest National Laboratory
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Publisher: Proceedings of the National Academy of Sciences
Date: 22-06-2020
Abstract: Bromine is an essential trace element, required for the formation of sulfilimine cross-links in collagen IV, a basement membrane protein. Sulfilimine cross-link formation depends on the production of hypobromous acid by peroxidasin. Once the cross-links are formed, bromide is released, but we suspected that hypobromous acid might brominate bystander molecules in the basement membrane. NanoSIMS imaging of mouse kidneys revealed peroxidasin-dependent bromine enrichment in the basement membrane, and proteomics studies uncovered peroxidasin-dependent bromination of a specific tyrosine in collagen IV. Our studies show that bromine, an essential element, is largely restricted to basement membranes in mammalian tissues. Our studies also show that peroxidasin brominates bystander tyrosines in addition to promoting the formation of collagen IV sulfilimine cross-links.
Publisher: Elsevier BV
Date: 04-2005
DOI: 10.1017/S095375620500225X
Abstract: We used ITS-RFLP and sequence analysis to determine the identities of the fungal endophytes of six terrestrial orchid species from southeastern Queensland, a region previously unexplored in this context. Pure cultures of orchid--colonising fungi were obtained and fungal identities were assessed by means of ITS-PCR, RFLP analysis, sequence comparison, and protocorm colonisation tests. ITS-PCR and RFLP analysis resulted in five main groupings. Sequencing and GenBank comparison of these five groups showed that the fungal endophytes isolated from the three Pterostylis species were probably Thanatephorus species. There was close sequence identity (90%) of the fungus isolated from Acianthus spp. to Epulorhiza repens, suggesting these may be the same fungal species. However, that only E. repens succeeded in colonising protocorms of Thelymitra pauciflora suggests these may be different species of Epulorhiza. Analysis of the ITS and LSU sequences of the fungus isolated from Caladenia carnea showed high identities with a sequence from a Sebacina vermifera originally isolated from Caladenia dilatata. These results show that there is specificity for fungal partners within the orchid genera Acianthus, Caladenia and Pterostylis.
Publisher: Springer Science and Business Media LLC
Date: 08-07-2022
DOI: 10.1038/S41396-022-01274-Z
Abstract: Parasites are widespread and erse in oceanic plankton and many of them infect single-celled algae for survival. How these parasites develop and scavenge energy within the host and how the cellular organization and metabolism of the host is altered remain open questions. Combining quantitative structural and chemical imaging with time-resolved transcriptomics, we unveil dramatic morphological and metabolic changes of the marine parasite Amoebophrya (Syndiniales) during intracellular infection, particularly following engulfment and digestion of nutrient-rich host chromosomes. Changes include a sequential acristate and cristate mitochondrion with a 200-fold increase in volume, a 13-fold increase in nucleus volume, development of Golgi apparatus and a metabolic switch from glycolysis (within the host) to TCA (free-living dinospore). Similar changes are seen in apicomplexan parasites, thus underlining convergent traits driven by metabolic constraints and the infection cycle. In the algal host, energy-producing organelles (plastid, mitochondria) remain relatively intact during most of the infection. We also observed that sugar reserves diminish while lipid droplets increase. Rapid infection of the host nucleus could be a “zombifying” strategy, allowing the parasite to digest nutrient-rich chromosomes and escape cytoplasmic defense, whilst benefiting from maintained carbon-energy production of the host cell.
Publisher: Proceedings of the National Academy of Sciences
Date: 26-01-2021
Abstract: Ocean warming is causing repeated mass coral bleaching, leading to catastrophic losses of coral reefs worldwide. Our ability to slow or revert this decline is h ered by an incomplete understanding of the processes underlying the breakdown of the coral–algal symbiosis. Here, we show that heat stress destabilizes the nutrient cycling between corals and their endosymbiotic algae long before bleaching becomes apparent. Notably, increased metabolic energy demands shift the coral–algal symbiosis from a nitrogen- to a carbon-limited state, reducing translocation and recycling of photosynthetic carbon. This effectively undermines the ecological advantage of harboring algal symbionts and directly contributes to the breakdown of the coral–algal symbiosis during heat stress.
Publisher: Elsevier BV
Date: 03-2020
Publisher: American Chemical Society (ACS)
Date: 07-11-2019
Abstract: The formation of water-stable aggregates in finely textured and polymineral magnetite Fe ore tailings is one of the critical processes in eco-engineering tailings into soil-like substrates as a new way to rehabilitate the tailings. Organic matter (OM) amendment and plant colonization are considered to be effective in enhancing water-stable aggregation, but the underlying mechanisms have not yet been elucidated. The present study aimed to characterize detailed changes in physicochemistry, Fe-bearing mineralogy, and organo-mineral interactions in magnetite Fe ore tailings subject to the combined treatments of OM amendment and plant colonization, by employing various microspectroscopic methods, including synchrotron-based X-ray absorption fine structure spectroscopy and nanoscale secondary ion mass spectroscopy. The results indicated that OM amendment and plant colonization neutralized the tailings' alkaline pH and facilitated water-stable aggregate formation. The resultant aggregates were consequences of ligand-promoted bioweathering of primary Fe-bearing minerals (mainly biotite-like minerals) and the formation of secondary Fe-rich mineral gels. Especially, the sequestration of OM (rich in carboxyl, aromatic, and/or carbonyl C) by Fe-rich minerals via ligand-exchange and/or hydrophobic interactions contributed to the aggregation. These findings have uncovered the processes and mechanisms of water-stable aggregate formation driven by OM amendment and plant colonization in alkaline Fe ore tailings, thus providing important basis for eco-engineered pedogenesis in the tailings.
Publisher: Springer Science and Business Media LLC
Date: 03-11-2020
Publisher: Wiley
Date: 12-12-2014
DOI: 10.1111/PCE.12230
Abstract: Mycorrhiza formation represents a significant carbon (C) acquisition alternative for orchid species, particularly those that remain achlorophyllous through all life stages. As it is known that orchid mycorrhizas facilitate nutrient transfer (most notably of C), it has not been resolved if C transfer occurs only after lysis of mycorrhizal structures (fungal pelotons) or also across the mycorrhizal interface of pre-lysed pelotons. We used high-resolution secondary ion mass spectrometry (nanoSIMS) and labelling with enriched (13) CO2 to trace C transfers, at subcellular scale, across mycorrhizal interfaces formed by Rhizanthella gardneri, an achlorphyllous orchid. Carbon was successfully traced in to the fungal portion of orchid mycorrhizas. However, we did not detect C movement across intact mycorrhizal interfaces up to 216 h post (13) CO2 labelling. Our findings provide support for the hypothesis that C transfer from the mycorrhizal fungus to orchid, at least for R. gardneri, likely occurs after lysis of the fungal peloton.
Publisher: Society of Economic Geologists
Date: 2020
DOI: 10.5382/ECONGEO.4692
Abstract: Orogenic Au deposits have contributed the majority of Au recovered globally throughout history. However, the mechanism that concentrates Au to extremely high bonanza grades in small domains within these deposits remains enigmatic. The volume of fluid required to provide extreme Au endowments in localized occurrences is not reflected in field observations (e.g., in the extent of quartz veining or hydrothermal alteration). Detailed optical, scanning and transmission electron microscopy, nanoscale secondary ion mass spectrometry, and 3-D neutron tomography have been used to investigate the processes responsible for development of anomalously high grade ore (upward of 3% Au) found in quartz veins at Fosterville gold mine (Victoria, Australia). Distinct textural settings of visible Au include (1) Au concentrated along pressure solution seams associated with wall-rock selvages, (2) as nano- to microscale dusty Au seams parallel to pressure solution seams, and (3) in microscale tension fractures perpendicular to stylolitic seams. The distribution of Au in arsenopyrite and pyrite hosted within pressure solution seams changes as a function of the extent of deformation. Sulfides in highly deformed pressure solution seams exclusively host Au as nano- to micrometer-sized clusters within features associated with corrosion and brittle failure, whereas sulfides in mildly deformed pressure solution seams have Au bound in the crystal structure. It is proposed that Au supersaturation in fluids introduced during seismic periods led to the deposition of abundant Au nanoparticles in quartz-carbonate veins. Subsequent pressure dissolution of vein quartz and carbonate during interseismic intervals allowed for episodic increase in the Au/quartz ratio and permitted liberation and migration of Au nanoparticles, promoting Au grain growth in favorable textural settings. Galvanic corrosion and brittle fracturing of auriferous sulfides during the interseismic period allowed additional remobilization and/or enrichment of sulfide-hosted Au. Repetition of this mechanism over the time scale of deposit formation acted to concentrate Au within the lodes. This Au ore upgrading model, referred to as “aseismic refinement,” provides a new insight for the genesis of ultrarich Au mineralization and, based on textures reported from many Au deposits, may be a globally significant component in the formation of orogenic Au deposits.
Publisher: Frontiers Media SA
Date: 09-12-2022
DOI: 10.3389/FPLS.2022.1036258
Abstract: Biological N 2 fixation in feather-mosses is one of the largest inputs of new nitrogen (N) to boreal forest ecosystems however, revealing the fate of newly fixed N within the bryosphere (i.e. bryophytes and their associated organisms) remains uncertain. Herein, we combined 15 N tracers, high resolution secondary ion mass-spectrometry (NanoSIMS) and a molecular survey of bacterial, fungal and diazotrophic communities, to determine the origin and transfer pathways of newly fixed N 2 within feather-moss ( Pleurozium schreberi ) and its associated microbiome. NanoSIMS images reveal that newly fixed N 2 , derived from cyanobacteria, is incorporated into moss tissues and associated bacteria, fungi and micro-algae. These images demonstrate that previous assumptions that newly fixed N 2 is sequestered into moss tissue and only released by decomposition are not correct. We provide the first empirical evidence of new pathways for N 2 fixed in feather-mosses to enter the boreal forest ecosystem (i.e. through its microbiome) and discuss the implications for wider ecosystem function.
Publisher: Elsevier BV
Date: 05-2022
Publisher: eLife Sciences Publications, Ltd
Date: 04-04-2017
DOI: 10.7554/ELIFE.23008
Abstract: Phytoplankton-bacteria interactions drive the surface ocean sulfur cycle and local climatic processes through the production and exchange of a key compound: dimethylsulfoniopropionate (DMSP). Despite their large-scale implications, these interactions remain unquantified at the cellular-scale. Here we use secondary-ion mass spectrometry to provide the first visualization of DMSP at sub-cellular levels, tracking the fate of a stable sulfur isotope (34S) from its incorporation by microalgae as inorganic sulfate to its biosynthesis and exudation as DMSP, and finally its uptake and degradation by bacteria. Our results identify for the first time the storage locations of DMSP in microalgae, with high enrichments present in vacuoles, cytoplasm and chloroplasts. In addition, we quantify DMSP incorporation at the single-cell level, with DMSP-degrading bacteria containing seven times more 34S than the control strain. This study provides an unprecedented methodology to label, retain, and image small diffusible molecules, which can be transposable to other symbiotic systems.
Publisher: Wiley
Date: 17-10-2019
DOI: 10.1111/ELE.13399
Publisher: Wiley
Date: 26-03-2010
DOI: 10.1111/J.1469-8137.2010.03246.X
Abstract: *Rhizanthella gardneri is a rare and fully subterranean orchid that is presumably obligately mycoheterotrophic. R. gardneri is thought to be linked via a common mycorrhizal fungus to co-occurring autotrophic shrubs, but there is no experimental evidence to support this supposition. *We used compartmentalized microcosms to investigate the R. gardneri tripartite relationship. (13)CO(2) was applied to foliage of Melaleuca scalena plants and [(13)C-(15)N]glycine was fed to the common mycorrhizal fungus, and both sources traced to R. gardneri plants. *In our microcosm trial, up to 5% of carbon (C) fed as (13)CO(2) to the autotrophic shrub was transferred to R. gardneri. R. gardneri also readily acquired soil C and nitrogen (N), where up to 6.2% of C and 22.5% of N fed as labelled glycine to soil was transferred via the fungus to R. gardneri after 240 h. *Our study confirms that R. gardneri is mycoheterotrophic and acquires nutrients via mycorrhizal fungus connections from an ectomycorrhizal autotrophic shrub and directly from the soil via the same fungus. This connection with a specific fungus is key to explaining why R. gardneri occurs exclusively under certain Melaleuca species at a very limited number of sites in Western Australia.
Publisher: Springer Science and Business Media LLC
Date: 02-12-2021
DOI: 10.1038/S41396-021-01158-8
Abstract: Efficient nutrient cycling in the coral-algal symbiosis requires constant but limited nitrogen availability. Coral-associated diazotrophs, i.e., prokaryotes capable of fixing dinitrogen, may thus support productivity in a stable coral-algal symbiosis but could contribute to its breakdown when overstimulated. However, the effects of environmental conditions on diazotroph communities and their interaction with other members of the coral holobiont remain poorly understood. Here we assessed the effects of heat stress on diazotroph ersity and their contribution to holobiont nutrient cycling in the reef-building coral Stylophora pistillata from the central Red Sea. In a stable symbiotic state, we found that nitrogen fixation by coral-associated diazotrophs constitutes a source of nitrogen to the algal symbionts. Heat stress caused an increase in nitrogen fixation concomitant with a change in diazotroph communities. Yet, this additional fixed nitrogen was not assimilated by the coral tissue or the algal symbionts. We conclude that although diazotrophs may support coral holobiont functioning under low nitrogen availability, altered nutrient cycling during heat stress abates the dependence of the coral host and its algal symbionts on diazotroph-derived nitrogen. Consequently, the role of nitrogen fixation in the coral holobiont is strongly dependent on its nutritional status and varies dynamically with environmental conditions.
Publisher: Springer Science and Business Media LLC
Date: 23-10-2019
Publisher: The Mycological Society of Japan
Date: 08-2007
Publisher: Springer Science and Business Media LLC
Date: 04-02-2021
Publisher: CSIRO Publishing
Date: 2008
DOI: 10.1071/BT08031
Abstract: Rhizanthella gardneri R.S.Rogers is an entirely subterranean mycoheterotrophic orchid known only from two isolated populations within south-western Western Australia (WA). This rare species appears restricted to habitats dominated by species of the Melaleuca uncinata complex. R. gardneri purportedly forms a tripartite relationship with Melaleuca1, via a connecting mycorrhizal fungus, for the purpose of carbohydrate and nutrient acquisition. Here, we quantify key climate, soil and vegetation characteristics of known R. gardneri habitats to provide baseline data for monitoring of known R. gardneri populations, to better understand how R. gardneri interacts with its habitat and to identify possible new sites for R. gardneri introduction. We found that the habitats of the two known R. gardneri populations show considerable differences in soil chemistry, Melaleuca structure and Melaleuca productivity. Multivariate analyses showed that both multidimensional scaling (MDS) and principal components analysis (PCA) ordinations of soil chemical characteristics were very similar. In idual sites within populations were relatively similar in all attributes measured, whereas overall northern and southern habitats were distinct from each other. These results suggest that R. gardneri can tolerate a range of conditions and may be more widespread than previously thought, given that there are extensive areas of Melaleuca thickets with similar habitat characteristics across south-western WA. Variability within the habitats of known R. gardneri populations suggests translocation of this species into sites with similar vegetation may be a viable option for the survival of this species.
Publisher: Elsevier BV
Date: 10-2009
DOI: 10.1016/J.MYCRES.2009.07.007
Abstract: Fully subterranean Rhizanthella gardneri (Orchidaceae) is obligately mycoheterotrophic meaning it is nutritionally dependent on the fungus it forms mycorrhizas with. Furthermore, R. gardneri purportedly participates in a nutrient sharing tripartite relationship where its mycorrhizal fungus simultaneously forms ectomycorrhizas with species of Melaleuca uncinata s.l. Although the mycorrhizal fungus of R. gardneri has been morphologically identified as Thanatephorus gardneri (from a single isolate), this identification has been recently questioned. We sought to clarify the identification of the mycorrhizal fungus of R. gardneri, using molecular methods, and to identify how specific its mycorrhizal relationship is. Fungal isolates taken from all sites where R. gardneri is known to occur shared almost identical ribosomal DNA (rDNA) sequences. The fungal isolate rDNA most closely matched that of other Ceratobasidiales species, particularly within the Ceratobasidium genus. However, interpretation of results was difficult as we found two distinct ITS sequences within all mycorrhizal fungal isolates of R. gardneri that we assessed. All mycorrhizal fungal isolates of R. gardneri readily formed ectomycorrhizas with a range of M. uncinata s.l. species. Consequently, it is likely that R. gardneri can form a nutrient sharing tripartite relationship where R. gardneri is connected to autotrophic M. uncinata s.l. by a common mycorrhizal fungus. These findings have implications for better understanding R. gardneri distribution, evolution and the ecological significance of its mycorrhizal fungus, particularly in relation to nutrient acquisition.
Publisher: Springer Science and Business Media LLC
Date: 02-06-2022
DOI: 10.1038/S41396-022-01254-3
Abstract: The ability of organisms to combine autotrophy and heterotrophy gives rise to one of the most successful nutritional strategies on Earth: mixotrophy. Sponges are integral members of shallow-water ecosystems and many host photosynthetic symbionts, but studies on mixotrophic sponges have focused primarily on species residing in high-light environments. Here, we quantify the contribution of photoautotrophy to the respiratory demand and total carbon diet of the sponge Chondrilla caribensis , which hosts symbiotic cyanobacteria and lives in low-light environments. Although the sponge is net heterotrophic at 20 m water depth, photosynthetically fixed carbon potentially provides up to 52% of the holobiont’s respiratory demand. When considering the total mixotrophic diet, photoautotrophy contributed an estimated 7% to total daily carbon uptake. Visualization of inorganic 13 C- and 15 N-incorporation using nanoscale secondary ion mass spectrometry (NanoSIMS) at the single-cell level confirmed that a portion of nutrients assimilated by the prokaryotic community was translocated to host cells. Photoautotrophy can thus provide an important supplemental source of carbon for sponges, even in low-light habitats. This trophic plasticity may represent a widespread strategy for net heterotrophic sponges hosting photosymbionts, enabling the host to buffer against periods of nutritional stress.
Publisher: Springer Science and Business Media LLC
Date: 15-07-2022
DOI: 10.1038/S41396-022-01283-Y
Abstract: The skeleton of reef-building coral harbors erse microbial communities that could compensate for metabolic deficiencies caused by the loss of algal endosymbionts, i.e., coral bleaching. However, it is unknown to what extent endolith taxonomic ersity and functional potential might contribute to thermal resilience. Here we exposed Goniastrea edwardsi and Porites lutea , two common reef‐building corals from the central Red Sea to a 17-day long heat stress. Using hyperspectral imaging, marker gene/metagenomic sequencing, and NanoSIMS, we characterized their endolithic microbiomes together with 15 N and 13 C assimilation of two skeletal compartments: the endolithic band directly below the coral tissue and the deep skeleton. The bleaching-resistant G. edwardsi was associated with endolithic microbiomes of greater functional ersity and redundancy that exhibited lower N and C assimilation than endoliths in the bleaching-sensitive P. lutea . We propose that the lower endolithic primary productivity in G . edwardsi can be attributed to the dominance of chemolithotrophs. Lower primary production within the skeleton may prevent unbalanced nutrient fluxes to coral tissues under heat stress, thereby preserving nutrient-limiting conditions characteristic of a stable coral-algal symbiosis. Our findings link coral endolithic microbiome structure and function to bleaching susceptibility, providing new avenues for understanding and eventually mitigating reef loss.
Publisher: Springer Science and Business Media LLC
Date: 30-03-2015
DOI: 10.1038/NCLIMATE2580
Publisher: Springer Science and Business Media LLC
Date: 14-02-2021
DOI: 10.1186/S40168-020-00984-W
Abstract: Sponges are increasingly recognised as key ecosystem engineers in many aquatic habitats. They play an important role in nutrient cycling due to their unrivalled capacity for processing both dissolved and particulate organic matter (DOM and POM) and the exceptional metabolic repertoire of their erse and abundant microbial communities. Functional studies determining the role of host and microbiome in organic nutrient uptake and exchange, however, are limited. Therefore, we coupled pulse-chase isotopic tracer techniques with nanoscale secondary ion mass spectrometry (NanoSIMS) to visualise the uptake and translocation of 13 C- and 15 N-labelled dissolved and particulate organic food at subcellular level in the high microbial abundance sponge Plakortis angulospiculatus and the low microbial abundance sponge Halisarca caerulea. The two sponge species showed significant enrichment of DOM- and POM-derived 13 C and 15 N into their tissue over time. Microbial symbionts were actively involved in the assimilation of DOM, but host filtering cells (choanocytes) appeared to be the primary site of DOM and POM uptake in both sponge species overall, via pinocytosis and phagocytosis, respectively. Translocation of carbon and nitrogen from choanocytes to microbial symbionts occurred over time, irrespective of microbial abundance, reflecting recycling of host waste products by the microbiome. Here, we provide empirical evidence indicating that the prokaryotic communities of a high and a low microbial abundance sponge obtain nutritional benefits from their host-associated lifestyle. The metabolic interaction between the highly efficient filter-feeding host and its microbial symbionts likely provides a competitive advantage to the sponge holobiont in the oligotrophic environments in which they thrive, by retaining and recycling limiting nutrients. Sponges present a unique model to link nutritional symbiotic interactions to holobiont function, and, via cascading effects, ecosystem functioning, in one of the earliest metazoan–microbe symbioses.
Location: United States of America
No related grants have been discovered for Jeremy Bougoure.