ORCID Profile
0000-0002-7190-5187
Current Organisation
University of Queensland
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Publisher: Springer Science and Business Media LLC
Date: 11-01-2016
DOI: 10.1007/S00442-015-3541-X
Abstract: Disturbance releases space and allows the growth of opportunistic species, excluded by the old stands, with a potential to alter community dynamics. In coral reefs, abundances of fast-growing, and disturbance-tolerant sponges are expected to increase and dominate as space becomes available following acute coral mortality events. Yet, an increase in abundance of these opportunistic species has been reported in only a few studies, suggesting certain mechanisms may be acting to regulate sponge populations. To gain insights into mechanisms of population control, we simulated the dynamics of the common reef-excavating sponge Cliona tenuis in the Caribbean using an in idual-based model. An orthogonal hypothesis testing approach was used, where four candidate mechanisms-algal competition, stock-recruitment limitation, whole and partial mortality-were incorporated sequentially into the model and the results were tested against independent field observations taken over a decade in Belize, Central America. We found that releasing space after coral mortality can promote C. tenuis outbreaks, but such outbreaks can be curtailed by macroalgal competition. The asymmetrical competitive superiority of macroalgae, given by their capacity to pre-empt space and outcompete with the sponge in a size-dependant fashion, supports their capacity to steal the opportunity from other opportunists. While multiple system stages can be expected in coral reefs following intense perturbation macroalgae may prevent the growth of other space-occupiers, such as bioeroding sponges, under low grazing pressure.
Publisher: Inter-Research Science Center
Date: 02-04-2020
DOI: 10.3354/MEPS13265
Abstract: Reef carbonate production and sediment generation are key processes for coral reef development and shoreline protection. The calcified green alga Halimeda is a major contributor of calcareous sediments, but rates of production and herbivory upon Halimeda are driven by biotic and environmental factors. Consequently, estimating rates of calcium carbonate (CaCO 3 ) production and transformation into sediment requires the integration of Halimeda gains and losses across habitats and seasons, which is rarely considered in carbonate budgets. Using seasonal rates of recruitment, growth, senescence and herbivory derived from observations and manipulative experiments, we developed an in idual-based model to quantify the annual cycle of Halimeda carbonate and sediment production at Heron Island, Great Barrier Reef. Halimeda population dynamics were simulated both within and outside branching Acropora canopies, which provide refuge from herbivory. Shelter from herbivory allowed larger Halimeda thalli to grow, leading to higher rates of carbonate accumulation (3.9 and 0.9 kg CaCO 3 m -2 yr -1 within and outside Acropora canopies, respectively) and sediment production (2.5 versus 1.0 kg CaCO 3 m -2 yr -1 , respectively). Overall, 37% of the annual carbonate production was transformed into sediments through senescence (84%) and fish herbivory (16%), with important variations among seasons and habitats. Our model underlines that algal rates of carbonate production are likely to be underestimated if herbivory is not integrated into the carbonate budget, and reveals an important indirect pathway by which structurally complex coral habitats contribute to reef carbonate budgets, suggesting that coral losses due to climate change may lead to further declines in reef sediment production.
Publisher: Wiley
Date: 22-12-2021
DOI: 10.1111/CONL.12847
Abstract: Complex ecological interactions are widely utilized to deliver conservation benefits but their efficacy is often debated. Using a coral reef trophic cascade as an ex le, we reveal that outcomes can be surprisingly difficult to detect. Even important impacts of marine reserves can go undetected (20% more coral with power 0.5). This evidentiary challenge is compounded by misinterpretation of “nonsignificant” results as evidence of failed conservation practice. We illustrate a more appropriate analytical approach using a Bayesian Region of Practical Equivalence (ROPE) whereby many tests of conservation practice would be interpreted correctly as “undecided” rather than “negative.” Practitioners working with ecological cascades will increasingly be faced with “undecided” evidence of conservation benefits. Since one solution is to consider a wider ersity of evidence, we provide a hierarchy of evidentiary quality. In this way, even reductionist evidence of the component ecological interactions can be utilized, which is far easier to collect and evaluate.
Publisher: EDP Sciences
Date: 04-2005
DOI: 10.1051/ALR:2005013
Publisher: Springer Science and Business Media LLC
Date: 10-11-2014
DOI: 10.1038/NCLIMATE2439
Publisher: Elsevier BV
Date: 04-2014
Publisher: Wiley
Date: 2005
DOI: 10.1002/AQC.692
Publisher: Wiley
Date: 2005
DOI: 10.1002/AQC.693
Publisher: Proceedings of the National Academy of Sciences
Date: 04-04-2016
Abstract: Fisheries management must avoid adverse impacts on the ecosystem. Doing so can be challenging in highly complex systems, particularly if the target species serves an important ecosystem function. Caribbean coral reefs provide a classic ex le in which herbivorous parrotfish are both an important fishery and key driver of ecosystem resilience. We developed and tested a multispecies fisheries model of parrotfish and linked it to a coral reef ecosystem experiencing climate change. We found that corals can remain resilient if less than 10% of the fishable parrotfish biomass is harvested and a minimum size of 30 cm is implemented. To our knowledge, this work is the first attempt to identify harvest levels that have little adverse effect on corals.
Publisher: Wiley
Date: 07-2022
DOI: 10.1002/ECS2.4108
Abstract: Ocean warming is already causing widespread changes to coral reef ecosystems worldwide. Warming is having direct and indirect impacts on food webs, but their interaction is unclear. Warming directly affects fishes and invertebrates by increasing their metabolic rate, resulting in changes to demographic processes such as growth rates. Indirect effects involve a loss of reef habitat quality as coral bleaching reduces the availability of refuges. We used a size‐structured dynamic energy budget model of fishes and invertebrates, coupled to a spatially explicit model of coral and algae, to explore potential changes to ecosystem function with warming. Modeled changes in biomass for +3°C of warming were found to be controlled predominantly by the direct effects of warming on growth rates, rather than by indirect effects via the changed coral habitat. Crucially for fisheries, the biomass of predators decreased by at least 50% with +3°C of warming, and productivity of predators decreased by at least 60%.
Publisher: The Company of Biologists
Date: 15-03-2010
DOI: 10.1242/JEB.037895
Abstract: Expert opinion was canvassed to identify crucial knowledge gaps in current understanding of climate change impacts on coral reef fishes. Scientists that had published three or more papers on the effects of climate and environmental factors on reef fishes were invited to submit five questions that, if addressed, would improve our understanding of climate change effects on coral reef fishes. Thirty-three scientists provided 155 questions, and 32 scientists scored these questions in terms of: (i) identifying a knowledge gap, (ii) achievability, (iii) applicability to a broad spectrum of species and reef habitats, and (iv) priority. Forty-two per cent of the questions related to habitat associations and community dynamics of fish, reflecting the established effects and immediate concern relating to climate-induced coral loss and habitat degradation. However, there were also questions on fish demographics, physiology, behaviour and management, all of which could be potentially affected by climate change. Irrespective of their in idual expertise and background, scientists scored questions from different topics similarly, suggesting limited bias and recognition of a need for greater interdisciplinary and collaborative research. Presented here are the 53 highest-scoring unique questions. These questions should act as a guide for future research, providing a basis for better assessment and management of climate change impacts on coral reefs and associated fish communities.
Publisher: Public Library of Science (PLoS)
Date: 08-11-2017
Publisher: EDP Sciences
Date: 04-2004
DOI: 10.1051/ALR:2004024
Publisher: Elsevier BV
Date: 04-2012
Publisher: EDP Sciences
Date: 04-2005
DOI: 10.1051/ALR:2005015
Publisher: Wiley
Date: 09-09-2014
DOI: 10.1111/GCB.12698
Abstract: One striking feature of coral reef ecosystems is the complex benthic architecture which supports erse and abundant fauna, particularly of reef fish. Reef‐building corals are in decline worldwide, with a corresponding loss of live coral cover resulting in a loss of architectural complexity. Understanding the dynamics of the reef architecture is therefore important to envision the ability of corals to maintain functional habitats in an era of climate change. Here, we develop a mechanistic model of reef topographical complexity for contemporary Caribbean reefs. The model describes the dynamics of corals and other benthic taxa under climate‐driven disturbances (hurricanes and coral bleaching). Corals have a simplified shape with explicit diameter and height, allowing species‐specific calculation of their colony surface and volume. Growth and the mechanical (hurricanes) and biological erosion (parrotfish) of carbonate skeletons are important in driving the pace of extension/reduction in the upper reef surface, the net outcome being quantified by a simple surface roughness index (reef rugosity). The model accurately simulated the decadal changes of coral cover observed in Cozumel (Mexico) between 1984 and 2008, and provided a realistic hindcast of coral colony‐scale (1–10 m) changing rugosity over the same period. We then projected future changes of Caribbean reef rugosity in response to global warming. Under severe and frequent thermal stress, the model predicted a dramatic loss of rugosity over the next two or three decades. Critically, reefs with managed parrotfish populations were able to delay the general loss of architectural complexity, as the benefits of grazing in maintaining living coral outweighed the bioerosion of dead coral skeletons. Overall, this model provides the first explicit projections of reef rugosity in a warming climate, and highlights the need of combining local (protecting and restoring high grazing) to global (mitigation of greenhouse gas emissions) interventions for the persistence of functional reef habitats.
Publisher: Wiley
Date: 09-11-2015
DOI: 10.1111/OIK.02602
Publisher: Wiley
Date: 25-09-2012
Publisher: CRC Press
Date: 22-09-2021
Publisher: Wiley
Date: 29-04-2023
DOI: 10.1111/GCB.16719
Abstract: Global environmental change is happening at unprecedented rates. Coral reefs are among the ecosystems most threatened by global change. For wild populations to persist, they must adapt. Knowledge shortfalls about corals' complex ecological and evolutionary dynamics, however, stymie predictions about potential adaptation to future conditions. Here, we review adaptation through the lens of quantitative genetics. We argue that coral adaptation studies can benefit greatly from “wild” quantitative genetic methods, where traits are studied in wild populations undergoing natural selection, genomic relationship matrices can replace breeding experiments, and analyses can be extended to examine genetic constraints among traits. In addition, in iduals with advantageous genotypes for anticipated future conditions can be identified. Finally, genomic genotyping supports simultaneous consideration of how genetic ersity is arrayed across geographic and environmental distances, providing greater context for predictions of phenotypic evolution at a metapopulation scale.
Publisher: Wiley
Date: 06-2023
DOI: 10.1002/ECS2.4580
Abstract: Crown‐of‐thorns starfish (CoTS) naturally occur on coral reefs throughout the Indo‐Pacific region. On Australia's Great Barrier Reef (GBR), outbreaks of CoTS populations are responsible for ecologically significant losses of corals, and while they have been documented for decades, they now undermine coral recovery from multiple stressors, especially anthropogenic warming. Culling interventions are currently the best approach to control CoTS outbreaks on the GBR, but assessing control effectiveness under multiple stressors is complicated. Using an ensemble of two reef community models simulating the temporal and spatial dynamics of CoTS and corals under future climate scenarios, we evaluate the present‐day and future effectiveness of the current implementation of the GBR CoTS Control Program. Specifically, we determine the culling effort needed (i.e., number of vessels) to achieve the maximum ecological benefits as predicted by the models under possible warming futures. Benefits were measured by comparing projections of coral cover and CoTS densities under scenarios of increasing control effort and baseline scenarios where no control was simulated. Projections of present‐day control efforts (five vessels) show that the number of in idual reefs subject to CoTS outbreaks is reduced by 50%–65% annually, yielding a benefit of 5%–7% of healthy GBR coral area per decade, equivalent to gaining 104–150 km 2 of live corals by 2035. A threefold increase in current control efforts is sufficient to reach more than 80% of the maximum coral benefits predicted by each model, but the future amount of effort required to control CoTS effectively depends on the intensity of warming and the early detection of CoTS outbreaks. While culling CoTS across the entire GBR is unfeasible, we provide a framework for maximizing ecosystem‐wide benefits of CoTS control and guide management decisions on the required culling effort needed to reduce CoTS outbreaks to levels that may ensure coral persistence in the face of future climate change impacts.
Publisher: Wiley
Date: 28-06-2013
DOI: 10.1111/CONL.12047
Publisher: Wiley
Date: 11-02-2022
DOI: 10.1002/ECY.3621
Publisher: Annual Reviews
Date: 03-01-2017
DOI: 10.1146/ANNUREV-MARINE-010816-060551
Abstract: Coral reefs provide critical services to coastal communities, and these services rely on ecosystem functions threatened by stressors. By summarizing the threats to the functioning of reefs from fishing, climate change, and decreasing water quality, we highlight that these stressors have multiple, conflicting effects on functionally similar groups of species and their interactions, and that the overall effects are often uncertain because of a lack of data or variability among taxa. The direct effects of stressors on links among functional groups, such as predator-prey interactions, are particularly uncertain. Using qualitative modeling, we demonstrate that this uncertainty of stressor impacts on functional groups (whether they are positive, negative, or neutral) can have significant effects on models of ecosystem stability, and reducing uncertainty is vital for understanding changes to reef functioning. This review also provides guidance for future models of reef functioning, which should include interactions among functional groups and the cumulative effect of stressors.
Publisher: Springer Science and Business Media LLC
Date: 20-06-2018
Publisher: Wiley
Date: 09-05-2023
DOI: 10.1111/GCB.16741
Abstract: Projections of coral reefs under climate change have important policy implications, but most analyses have focused on the intensification of climate‐related physical stress rather than explicitly modelling how coral populations respond to stressors. Here, we analyse the future of the Great Barrier Reef (GBR) under multiple, spatially realistic drivers which allows less impacted sites to facilitate recovery. Under a Representative Concentration Pathway (RCP) 2.6 CMIP5 climate ensemble, where warming is capped at ~2°C, GBR mean coral cover declined mid‐century but approached present‐day levels towards 2100. This is considerably more optimistic than most analyses. However, under RCP4.5, mean coral cover declined by % by late‐century, and reached near zero under RCP ≥6.0. While these models do not allow for adaptation, they significantly extend past studies by revealing demographic resilience of coral populations to low levels of additional warming, though more pessimistic outcomes might be expected under CMIP6. Substantive coral populations under RCP2.6 would facilitate long‐term genetic adaptation, adding value to ambitious greenhouse emissions mitigation.
Publisher: PeerJ
Date: 13-07-2021
DOI: 10.7717/PEERJ.11608
Abstract: Ocean acidification (OA) is negatively affecting calcification in a wide variety of marine organisms. These effects are acute for many tropical scleractinian corals under short-term experimental conditions, but it is unclear how these effects interact with ecological processes, such as competition for space, to impact coral communities over multiple years. This study sought to test the use of in idual-based models (IBMs) as a tool to scale up the effects of OA recorded in short-term studies to community-scale impacts, combining data from field surveys and mesocosm experiments to parameterize an IBM of coral community recovery on the fore reef of Moorea, French Polynesia. Focusing on the dominant coral genera from the fore reef, Pocillopora , Acropora , Montipora and Porites , model efficacy first was evaluated through the comparison of simulated and empirical dynamics from 2010–2016, when the reef was recovering from sequential acute disturbances (a crown-of-thorns seastar outbreak followed by a cyclone) that reduced coral cover to ~0% by 2010. The model then was used to evaluate how the effects of OA (1,100–1,200 µatm pCO 2 ) on coral growth and competition among corals affected recovery rates (as assessed by changes in % cover y −1 ) of each coral population between 2010–2016. The model indicated that recovery rates for the fore reef community was halved by OA over 7 years, with cover increasing at 11% y −1 under ambient conditions and 4.8% y −1 under OA conditions. However, when OA was implemented to affect coral growth and not competition among corals, coral community recovery increased to 7.2% y −1 , highlighting mechanisms other than growth suppression (i.e., competition), through which OA can impact recovery. Our study reveals the potential for IBMs to assess the impacts of OA on coral communities at temporal and spatial scales beyond the capabilities of experimental studies, but this potential will not be realized unless empirical analyses address a wider variety of response variables representing ecological, physiological and functional domains.
Publisher: Oxford University Press (OUP)
Date: 2005
DOI: 10.1016/J.ICESJMS.2004.11.009
Abstract: Large-scale, mass-balance trophic models have been developed for northern and southern regions of both the Benguela and Humboldt upwelling ecosystems. Four of these Ecopath models were compared and calibrated against one another. A common model structure was established, and a common basis was used to derive poorly known parameter values. The four resulting models represent ecosystems in which the main commercial fish species have been moderately to heavily fished: central-southern Chile (1992), northern-central Peru (1973–1981), South Africa (1980–1989), and Namibia (1995–2000). Quantitative ecosystem indicators derived from these models were compared. Indicators based on large flows (involving low trophic levels) or top predators were not well estimated, because of aggregation problems. Many of the indicators could be contrasted on the basis of differences between the Benguela and Humboldt systems, rather than on the basis of fishing impact. These include integrated values relating to total catches, and trophic levels of key species groups. Indicators based on integrated biomass, total production, and total consumption tended to capture differences between the model for Namibia (where fish populations were severely reduced) and the other models. We conclude that a suite of indicators is required to represent ecosystem state, and that interpretation requires relatively detailed understanding of the different ecosystems.
Publisher: EDP Sciences
Date: 07-2005
DOI: 10.1051/ALR:2005029
Publisher: Elsevier BV
Date: 04-2023
Publisher: Oxford University Press (OUP)
Date: 2005
DOI: 10.1016/J.ICESJMS.2004.12.013
Abstract: Trophic spectra represent the distribution of biomass, abundance, or catch by trophic level, and may be used as indicators of the trophic structure and functioning of aquatic ecosystems in a fisheries context. As a theoretical background, we present a simple ecosystem model of biomass flow reflecting predation and ontogenetic processes. Biomass trophic spectrum of total biomass can be modelled as the result of three major factors and processes: trophic efficiency, transfer kinetics, and extent of top-down control. In the simulations, changes in the spectrum highlight fishing impacts on trophic structure and reveal some functional characteristics of the underlying ecosystem. As ex les of potential applications, three case studies of trophic spectra are presented. Catch trophic spectra allow description of structural differences among European fishing areas and periods. Abundance trophic spectra of coral-reef fish assemblages display different trophic signatures, characterizing different reef habitats in New Caledonia and highlighting fishing effects in a marine protected area context. Biomass trophic spectra of demersal resources off Northwest Africa show a shift in ecosystem structure that can be attributed to the rapid increase in fishing pressure during the past few decades. Off Senegal, total biomass remained fairly constant, suggesting a strong top-down control linked to fisheries targeting high trophic level species. Off Guinea, exploitation rates are spread over a wider range of trophic levels, and the total biomass of demersal resources tended to decrease. The trophic spectrum is concluded to be a useful indicator describing and comparing systems in time and space, detecting phase shifts linked to natural or anthropogenic perturbations, and revealing differences in ecosystem functioning.
Publisher: The Royal Society
Date: 05-01-2015
Abstract: Recent epizootics have removed important functional species from Caribbean coral reefs and left communities vulnerable to alternative attractors. Global warming will impact reefs further through two mechanisms. A chronic mechanism reduces coral calcification, which can result in depressed somatic growth. An acute mechanism, coral bleaching, causes extreme mortality when sea temperatures become anomalously high. We ask how these two mechanisms interact in driving future reef state (coral cover) and resilience (the probability of a reef remaining within a coral attractor). We find that acute mechanisms have the greatest impact overall, but the nature of the interaction with chronic stress depends on the metric considered. Chronic and acute stress act additively on reef state but form a strong synergy when influencing resilience by intensifying a regime shift. Chronic stress increases the size of the algal basin of attraction (at the expense of the coral basin), whereas coral bleaching pushes the system closer to the algal attractor. Resilience can change faster—and earlier—than a change in reef state. Therefore, we caution against basing management solely on measures of reef state because a loss of resilience can go unnoticed for many years and then become disproportionately more difficult to restore.
Publisher: EDP Sciences
Date: 07-2005
DOI: 10.1051/ALR:2005028
Publisher: Elsevier BV
Date: 05-2016
DOI: 10.1016/J.TREE.2016.02.014
Abstract: Sharks are considered the apex predator of coral reefs, but the consequences of their global depletion are uncertain. Here we explore the ecological roles of sharks on coral reefs and, conversely, the importance of reefs for sharks. We find that most reef-associated shark species do not act as apex predators but instead function as mesopredators along with a erse group of reef fish. While sharks perform important direct and indirect ecological roles, the evidence to support hypothesised shark-driven trophic cascades that benefit corals is weak and equivocal. Coral reefs provide some functional benefits to sharks, but sharks do not appear to favour healthier reef environments. Restoring populations of sharks is important and can yet deliver ecological surprise.
Publisher: Public Library of Science (PLoS)
Date: 26-04-2017
Publisher: Wiley
Date: 28-12-2021
DOI: 10.1002/ECM.1494
Abstract: Cumulative impacts assessments on marine ecosystems have been hindered by the difficulty of collecting environmental data and identifying drivers of community dynamics beyond local scales. On coral reefs, an additional challenge is to disentangle the relative influence of multiple drivers that operate at different stages of coral ontogeny. We integrated coral life history, population dynamics, and spatially explicit environmental drivers to assess the relative and cumulative impacts of multiple stressors across 2,300 km of the world’s largest coral reef ecosystem, Australia’s Great Barrier Reef (GBR). Using literature data, we characterized relationships between coral life history processes (reproduction, larval dispersal, recruitment, growth, and mortality) and environmental variables. We then simulated coral demographics and stressor impacts at the organism (coral colony) level on ,800 in idual reefs linked by larval connectivity and exposed to temporally and spatially realistic regimes of acute (crown‐of‐thorns starfish outbreaks, cyclones, and mass coral bleaching) and chronic (water‐quality) stressors. Model simulations produced a credible reconstruction of recent (2008–2020) coral trajectories consistent with monitoring observations, while estimating the impacts of each stressor at reef and regional scales. Overall, simulated coral populations declined by one‐third across the GBR, from an average of ~29% to ~19% hard coral cover. By 2020, % of the GBR had coral cover higher than 30%, a status of reef health corroborated by scarce and sparsely distributed monitoring data. Reef‐wide annual rates of coral mortality were driven by bleaching (48%) ahead of cyclones (41%) and starfish predation (11%). Beyond the reconstructed status and trends, the model enabled the emergence of complex interactions that compound the effects of multiple stressors while promoting a mechanistic understanding of coral cover dynamics. Drivers of coral cover growth were identified notably, water quality (suspended sediments) was estimated to delay recovery for at least 25% of inshore reefs. Standardized rates of coral loss and recovery allowed the integration of all cumulative impacts to determine the equilibrium cover for each reef. This metric, combined with maps of impacts, recovery potential, water‐quality thresholds, and reef state metrics, facilitates strategic spatial planning and resilience‐based management across the GBR.
Publisher: Wiley
Date: 13-10-2014
DOI: 10.1111/GCB.12725
Abstract: Under projections of global climate change and other stressors, significant changes in the ecology, structure and function of coral reefs are predicted. Current management strategies tend to look to the past to set goals, focusing on halting declines and restoring baseline conditions. Here, we explore a complementary approach to decision making that is based on the anticipation of future changes in ecosystem state, function and services. Reviewing the existing literature and utilizing a scenario planning approach, we explore how the structure of coral reef communities might change in the future in response to global climate change and overfishing. We incorporate uncertainties in our predictions by considering heterogeneity in reef types in relation to structural complexity and primary productivity. We examine 14 ecosystem services provided by reefs, and rate their sensitivity to a range of future scenarios and management options. Our predictions suggest that the efficacy of management is highly dependent on biophysical characteristics and reef state. Reserves are currently widely used and are predicted to remain effective for reefs with high structural complexity. However, when complexity is lost, maximizing service provision requires a broader portfolio of management approaches, including the provision of artificial complexity, coral restoration, fish aggregation devices and herbivore management. Increased use of such management tools will require capacity building and technique refinement and we therefore conclude that ersification of our management toolbox should be considered urgently to prepare for the challenges of managing reefs into the 21st century.
Publisher: Springer Science and Business Media LLC
Date: 30-01-2011
Publisher: Proceedings of the National Academy of Sciences
Date: 14-11-2016
Abstract: Most studies of the impact of global warming focus on the direct physiological impacts of climate change. However, global warming is shifting the distribution of many species and leading to novel interactions between previously separated species that have the potential to transform entire ecological communities. This study shows that an increase in the proportion of warmwater species (“tropicalization”) as oceans warm is increasing fish herbivory in kelp forests, contributing to their decline and subsequent persistence in alternate “kelp-free” states. These tropical and subtropical herbivores are increasingly impacting temperate algal communities worldwide, posing a significant threat to the long-term stability of these iconic ecosystems and the valuable services they provide.
Publisher: Inter-Research Science Center
Date: 02-03-2015
DOI: 10.3354/MEPS11134
Publisher: Frontiers Media SA
Date: 18-03-2020
Publisher: Elsevier BV
Date: 2022
Publisher: Cold Spring Harbor Laboratory
Date: 30-06-2023
DOI: 10.1101/2023.06.28.546961
Abstract: Lewontin’s paradox, the observation that levels of genetic ersity (π) among animals do not scale linearly with variation in census population sizes ( N c ), is an evolutionary conundrum, where the most extreme mismatches between π and N c are found for highly abundant marine invertebrates. Yet, whether new mutations influence π relative to extrinsic processes remains unknown for most taxa. Here, we provide the first direct germline mutation rate ( μ ) estimate for a marine invertebrate, using high-coverage (60x) whole-genome sequencing of wild-caught Acanthaster cf. solaris crown-of-thorns sea stars (Echinodermata). We also provide empirical estimates of adult N c in Australia’s Great Barrier Reef to jointly examine the determinants of π. Based on direct observations of 63 de novo mutations across 14 parent-offspring trios, the A. cf. solaris mean μ was 9.13 x 10 -09 mutations per-site per-generation (95% CI: 6.51 x 10 -09 to 1.18 x 10 -08 ). This value exceeds estimates for other invertebrates, showing greater concordance with reported vertebrate germline mutation rates. Lower-than-expected N e (∼70,000-180,000) and low N e / N c values (0.0047-0.048) indicated significant genetic drift and weak influences of contemporary population outbreaks on long-term π. Our findings of elevated μ and low N e in A. cf. solaris may help explain high mutational loads and extreme polymorphism levels observed in some marine invertebrate taxa and are consistent with μ evolving in response to N e (drift-barrier hypothesis). This study advances our understanding of the processes controlling levels of natural genetic variation and provides new data valuable for further testing hypotheses about mutation rate evolution across animal phyla.
Publisher: Springer Science and Business Media LLC
Date: 25-10-2017
DOI: 10.1038/S41598-017-14272-5
Abstract: Structural complexity strongly influences bio ersity and ecosystem productivity. On coral reefs, structural complexity is typically measured using a single and small-scale metric (‘rugosity’) that represents multiple spatial attributes differentially exploited by species, thus limiting a complete understanding of how fish associate with reef structure. We used a novel approach to compare relationships between fishes and previously unavailable components of reef complexity, and contrasted the results against the traditional rugosity index. This study focused on damselfish to explore relationships between fishes and reef structure. Three territorial species, with contrasting trophic habits and expected use of the reef structure, were examined to infer the potential species-specific mechanisms associated with how complexity influences habitat selection. Three-dimensional reef reconstructions from photogrammetry quantified the following metrics of habitat quality: 1) visual exposure to predators and competitors, 2) density of predation refuges and 3) substrate-related food availability. These metrics explained the species distribution better than the traditional measure of rugosity, and each species responded to different complexity components. Given that a critical effect of reef degradation is loss of structure, adopting three-dimensional technologies potentially offers a new tool to both understand species-habitat association and help forecast how fishes will be affected by the flattening of reefs.
Publisher: Springer Science and Business Media LLC
Date: 03-04-2014
Location: France
Location: United Kingdom of Great Britain and Northern Ireland
No related grants have been discovered for Yves-Marie Bozec.