ORCID Profile
0000-0001-8090-8876
Current Organisation
The University of Auckland
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Publisher: Springer International Publishing
Date: 2017
Publisher: Elsevier BV
Date: 12-2017
Publisher: Elsevier BV
Date: 10-2011
DOI: 10.1016/J.PBIOMOLBIO.2011.06.015
Abstract: The VPH/Physiome Project is developing the model encoding standards CellML (cellml.org) and FieldML (fieldml.org) as well as web-accessible model repositories based on these standards (models.physiome.org). Freely available open source computational modelling software is also being developed to solve the partial differential equations described by the models and to visualise results. The OpenCMISS code (opencmiss.org), described here, has been developed by the authors over the last six years to replace the CMISS code that has supported a number of organ system Physiome projects. OpenCMISS is designed to encompass multiple sets of physical equations and to link subcellular and tissue-level biophysical processes into organ-level processes. In the Heart Physiome project, for ex le, the large deformation mechanics of the myocardial wall need to be coupled to both ventricular flow and embedded coronary flow, and the reaction-diffusion equations that govern the propagation of electrical waves through myocardial tissue need to be coupled with equations that describe the ion channel currents that flow through the cardiac cell membranes. In this paper we discuss the design principles and distributed memory architecture behind the OpenCMISS code. We also discuss the design of the interfaces that link the sets of physical equations across common boundaries (such as fluid-structure coupling), or between spatial fields over the same domain (such as coupled electromechanics), and the concepts behind CellML and FieldML that are embodied in the OpenCMISS data structures. We show how all of these provide a flexible infrastructure for combining models developed across the VPH/Physiome community.
Publisher: Springer Science and Business Media LLC
Date: 10-04-2015
DOI: 10.1007/S10237-015-0668-Y
Abstract: This study presents an evaluation of the role that cartilage fibre 'split line' orientation plays in informing femoral cartilage stress patterns. A two-stage model is presented consisting of a whole knee joint coupled to a tissue-level cartilage model for computational efficiency. The whole joint model may be easily customised to any MRI or CT geometry using free-form deformation. Three 'split line' patterns (medial-lateral, anterior-posterior and random) were implemented in a finite element model with constitutive properties referring to this 'split line' orientation as a finite element fibre field. The medial-lateral orientation was similar to anatomy and was derived from imaging studies. Model predictions showed that 'split lines' are formed along the line of maximum principal strains and may have a biomechanical role of protecting the cartilage by limiting the cartilage deformation to the area of higher cartilage thickness.
Publisher: Informa UK Limited
Date: 17-09-2018
Location: United Kingdom of Great Britain and Northern Ireland
No related grants have been discovered for Kumar Mithraratne.