ORCID Profile
0000-0002-4977-0757
Current Organisation
Deakin University - Melbourne Burwood Campus
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Marine and Estuarine Ecology (incl. Marine Ichthyology) | Microbial Ecology | Soil Sciences | Carbon Sequestration Science
Ecosystem Assessment and Management of Coastal and Estuarine Environments | Climate Change Mitigation Strategies | Coastal and Estuarine Soils |
Publisher: Elsevier BV
Date: 08-2021
Publisher: The Royal Society
Date: 22-10-2015
Abstract: Seagrasses are among the Earth's most efficient and long-term carbon sinks, but coastal development threatens this capacity. We report new evidence that disturbance to seagrass ecosystems causes release of ancient carbon. In a seagrass ecosystem that had been disturbed 50 years ago, we found that soil carbon stocks declined by 72%, which, according to radiocarbon dating, had taken hundreds to thousands of years to accumulate. Disturbed soils harboured different benthic bacterial communities (according to 16S rRNA sequence analysis), with higher proportions of aerobic heterotrophs compared with undisturbed. Fingerprinting of the carbon (via stable isotopes) suggested that the contribution of autochthonous carbon (carbon produced through plant primary production) to the soil carbon pool was less in disturbed areas compared with seagrass and recovered areas. Seagrass areas that had recovered from disturbance had slightly lower (35%) carbon levels than undisturbed, but more than twice as much as the disturbed areas, which is encouraging for restoration efforts. Slow rates of seagrass recovery imply the need to transplant seagrass, rather than waiting for recovery via natural processes. This study empirically demonstrates that disturbance to seagrass ecosystems can cause release of ancient carbon, with potentially major global warming consequences.
Publisher: Wiley
Date: 11-2015
DOI: 10.1890/15-0149.1
Abstract: Many marine ecosystems have the capacity for long-term storage of organic carbon (C) in what are termed "blue carbon" systems. While blue carbon systems (saltmarsh, mangrove, and seagrass) are efficient at long-term sequestration of organic carbon (C), much of their sequestered C may originate from other (allochthonous) habitats. Macroalgae, due to their high rates of production, fragmentation, and ability to be transported, would also appear to be able to make a significant contribution as C donors to blue C habitats. In order to assess the stability of macroalgal tissues and their likely contribution to long-term pools of C, we applied thermogravimetric analysis (TGA) to 14 taxa of marine macroalgae and coastal vascular plants. We assessed the structural complexity of multiple lineages of plant and tissue types with differing cell wall structures and found that decomposition dynamics varied significantly according to differences in cell wall structure and composition among taxonomic groups and tissue function (photosynthetic vs. attachment). Vascular plant tissues generally exhibited greater stability with a greater proportion of mass loss at temperatures > 300 degrees C (peak mass loss -320 degrees C) than macroalgae (peak mass loss between 175-300 degrees C), consistent with the lignocellulose matrix of vascular plants. Greater variation in thermogravimetric signatures within and among macroalgal taxa, relative to vascular plants, was also consistent with the ersity of cell wall structure and composition among groups. Significant degradation above 600 degrees C for some macroalgae, as well as some belowground seagrass tissues, is likely due to the presence of taxon-specific compounds. The results of this study highlight the importance of the lignocellulose matrix to the stability of vascular plant sources and the potentially significant role of refractory, taxon-specific compounds (carbonates, long-chain lipids, alginates, xylans, and sulfated polysaccharides) from macroalgae and seagrasses for their long-term sedimentary C storage. This study shows that marine macroalgae do contain refractory compounds and thus may be more valuable to long-term carbon sequestration than we previously have considered.
Publisher: Inter-Research Science Center
Date: 12-03-2020
DOI: 10.3354/AME01926
Abstract: The health of seagrass plants, and thereby the ecosystems they form, is linked to their associated microbial communities. However, the role of the microbiome in holobiont function and health remains poorly understood for most seagrass species and environmental pressures, and there is, therefore, a need to better understand the drivers behind the formation of and external influences on the seagrass microbiome. Using a core microbiome framework, we characterised the leaf microbiomes of 6 estuarine seagrass populations after a precipitation event to explore how the microbiomes vary across different sites and salinities over a regional spatial scale. We found that each estuary had distinct core bacterial community structures (beta- ersity), but shared a more similar fungal core community structure. We hypothesise that the differences in the bacterial members of the microbiomes among estuaries are generally the result of each estuary being influenced by unique watersheds and sources of prokaryotes. In contrast, the similarity in the core fungal communities suggests that the eukaryotic components of the microbiomes are likely under selection or result from similar colonisation pathway(s). We also found that the bacterial taxa driving the differences among estuaries were linked to the salinity of the estuary, likely due to (1) the general epibiotic nature of colonisation (i.e. watershed source and exposure) and (2) members or functional groups within the leaf microbiome assisting seagrasses in coping with the extreme salinities. These results are valuable for linking microbiomes to the resilience of seagrasses living within dynamic estuaries experiencing a range of physicochemical pressures.
Publisher: Wiley
Date: 16-11-2023
DOI: 10.1111/REC.13824
Abstract: The United Nations Decade of Ecosystem Restoration was announced in 2021 to highlight the need for collective efforts to revive degraded ecosystems. Plant above‐ and belowground microbiomes are fundamental to plant health and ecosystem functioning. Plant aboveground microbiomes have received considerably more attention than the belowground microbiome, especially in the context of coastal plant restoration. Thus, there is fundamental gap in our understanding of the role belowground microbiomes play in restoration success in saltmarsh and mangrove ecosystems. Here, we outline potential pathways and challenges associated with including the belowground microbiome in mangrove and saltmarsh restoration via a conceptual framework and an overview of current literature. We highlight the large gap of knowledge that exists in plant–microbe literature as it pertains to coastal restoration warranting future research. More research is needed to significantly advance both fundamental and applied knowledge through better understanding of the importance of coastal microbiomes to restoration success by stakeholders and funding bodies.
Publisher: Wiley
Date: 20-09-2017
Publisher: Wiley
Date: 12-07-2023
DOI: 10.1111/GCB.16859
Abstract: Climate change is fundamentally altering marine and coastal ecosystems on a global scale. While the effects of ocean warming and acidification on ecology and ecosystem functions and services are being comprehensively researched, less attention is directed toward understanding the impacts of human‐driven ocean salinity changes. The global water cycle operates through water fluxes expressed as precipitation, evaporation, and freshwater runoff from land. Changes to these in turn modulate ocean salinity and shape the marine and coastal environment by affecting ocean currents, stratification, oxygen saturation, and sea level rise. Besides the direct impact on ocean physical processes, salinity changes impact ocean biological functions with the ecophysiological consequences are being poorly understood. This is surprising as salinity changes may impact ersity, ecosystem and habitat structure loss, and community shifts including trophic cascades. Climate model future projections (of end of the century salinity changes) indicate magnitudes that lead to modification of open ocean plankton community structure and habitat suitability of coral reef communities. Such salinity changes are also capable of affecting the ersity and metabolic capacity of coastal microorganisms and impairing the photosynthetic capacity of (coastal and open ocean) phytoplankton, macroalgae, and seagrass, with downstream ramifications on global biogeochemical cycling. The scarcity of comprehensive salinity data in dynamic coastal regions warrants additional attention. Such datasets are crucial to quantify salinity‐based ecosystem function relationships and project such changes that ultimately link into carbon sequestration and freshwater as well as food availability to human populations around the globe. It is critical to integrate vigorous high‐quality salinity data with interacting key environmental parameters (e.g., temperature, nutrients, oxygen) for a comprehensive understanding of anthropogenically induced marine changes and its impact on human health and the global economy.
Publisher: Annual Reviews
Date: 03-01-2020
DOI: 10.1146/ANNUREV-MARINE-010318-095333
Abstract: More than two-thirds of global biomass consists of vascular plants. A portion of the detritus they generate is carried into the oceans from land and highly productive blue carbon ecosystems—salt marshes, mangrove forests, and seagrass meadows. This large detrital input receives scant attention in current models of the global carbon cycle, though for blue carbon ecosystems, increasingly well-constrained estimates of biomass, productivity, and carbon fluxes, reviewed in this article, are now available. We show that the fate of this detritus differs markedly from that of strictly marine origin, because the former contains lignocellulose—an energy-rich polymer complex of cellulose, hemicelluloses, and lignin that is resistant to enzymatic breakdown. This complex can be depolymerized for nutritional purposes by specialized marine prokaryotes, fungi, protists, and invertebrates using enzymes such as glycoside hydrolases and lytic polysaccharide monooxygenases to release sugar monomers. The lignin component, however, is less readily depolymerized, and detritus therefore becomes lignin enriched, particularly in anoxic sediments, and forms a major carbon sink in blue carbon ecosystems. Eventual lignin breakdown releases a wide variety of small molecules that may contribute significantly to the oceanic pool of recalcitrant dissolved organic carbon. Marine carbon fluxes and sinks dependent on lignocellulosic detritus are important ecosystem services that are vulnerable to human interventions. These services must be considered when protecting blue carbon ecosystems and planning initiatives aimed at mitigating anthropogenic carbon emissions.
Publisher: Elsevier BV
Date: 07-2018
DOI: 10.1016/J.SCITOTENV.2018.01.012
Abstract: Through litter decomposition enormous amounts of carbon is emitted to the atmosphere. Numerous large-scale decomposition experiments have been conducted focusing on this fundamental soil process in order to understand the controls on the terrestrial carbon transfer to the atmosphere. However, previous studies were mostly based on site-specific litter and methodologies, adding major uncertainty to syntheses, comparisons and meta-analyses across different experiments and sites. In the TeaComposition initiative, the potential litter decomposition is investigated by using standardized substrates (Rooibos and Green tea) for comparison of litter mass loss at 336 sites (ranging from -9 to +26 °C MAT and from 60 to 3113 mm MAP) across different ecosystems. In this study we tested the effect of climate (temperature and moisture), litter type and land-use on early stage decomposition (3 months) across nine biomes. We show that litter quality was the predominant controlling factor in early stage litter decomposition, which explained about 65% of the variability in litter decomposition at a global scale. The effect of climate, on the other hand, was not litter specific and explained <0.5% of the variation for Green tea and 5% for Rooibos tea, and was of significance only under unfavorable decomposition conditions (i.e. xeric versus mesic environments). When the data were aggregated at the biome scale, climate played a significant role on decomposition of both litter types (explaining 64% of the variation for Green tea and 72% for Rooibos tea). No significant effect of land-use on early stage litter decomposition was noted within the temperate biome. Our results indicate that multiple drivers are affecting early stage litter mass loss with litter quality being dominant. In order to be able to quantify the relative importance of the different drivers over time, long-term studies combined with experimental trials are needed.
Publisher: Wiley
Date: 20-02-2017
DOI: 10.1111/JEU.12387
Abstract: As a result of anthropogenic influences and global climate change, emerging infectious marine diseases are thought to be increasingly more common and more severe than in the past. The aim of our investigation was to confirm the presence of Labyrinthula, the aetiological agent of the seagrass wasting disease, in Southeastern Australia and provide the first isolation and characterisation of this protist, in Australia. Colonies and in idual cells were positively identified as Labyrinthula using published descriptions, diagrams, and photographs. Their identity was then confirmed using DNA barcoding of a region of the 18S rRNA gene. Species level identification of isolates was not possible as the taxonomy of the Labyrinthula is still poorly resolved. Still, a ersity of Labyrinthula was isolated from small sections of the southeast coast of Australia. The isolates were grouped into three haplotypes that are biogeographically restricted. These haplotypes are closely related to previously identified saprotrophic clades. The study highlights the need for further investigation into the global distribution of Labyrinthula, including phylogenetic pathogenicity and analysis of host-parasite interactions in response to stressors. Given the results of our analyses, it is prudent to continue research into disease and epidemic agents to better prepare researchers for potential future outbreaks.
Publisher: Elsevier BV
Date: 07-2014
DOI: 10.1016/J.MIMET.2014.04.008
Abstract: A new protocol was developed to detach bacteria from seagrass tissue and subsequently enumerate cells using flow cytometry (FCM). A method involving addition of the surfactant Tween 80 and vortexing resulted in maximum detachment efficiency of seagrass attached bacteria, providing a robust protocol for precisely enumerating seagrass-associated bacteria with FCM. Using this approach we detected cell concentrations between 2.0×10(5) and 8.0×10(6)cells mg(-1) DW tissue.
Publisher: Springer Science and Business Media LLC
Date: 31-10-2020
Publisher: Wiley
Date: 23-01-2018
Publisher: American Chemical Society (ACS)
Date: 26-10-2020
Publisher: Wiley
Date: 09-03-2018
DOI: 10.1002/MBO3.600
Publisher: Elsevier BV
Date: 09-2022
DOI: 10.1016/J.ENVRES.2022.113280
Abstract: Coastal pollution, including nutrient loading, can negatively impact seagrass health and cover and may consequently alter soil organic carbon (SOC) accumulation and preservation. Key to understanding how eutrophication impacts SOC cycling in seagrass ecosystems is how nutrient loading changes the sources of carbon being deposited and how these changes in resources, both nutrients and carbon availability, influence soil microbiota community and activity. Currently, the direction and magnitude of nutrient loading impacts on seagrass SOC dynamics are poorly understood at a meadow scale, limiting our ability to reveal the driving mechanisms of SOC remineralisation. The purpose of this study was to assess the response of surface SOC and soil microbiomes to nutrient loading within tropical seagrass meadows. To achieve this, we quantified both total SOC and recalcitrant soil organic carbon (RSOC) concentrations and sources, in addition to the composition of bacterial and fungal communities and soil extracellular enzyme activities. We found that nutrient loading elevated SOC and RSOC content, mainly facilitated by enhanced algal growth. There was no nutrient effect on the soil prokaryotic communities, however, saprotrophic fungi groups (i.e. Trapeliales, Sordaridales, Saccharomycetales and Polyporales) and fungal activities were elevated under high nutrient conditions, including extracellular enzyme activities linked to seagrass-based cellulose and lignin decomposition. This relative increase in RSOC transformation may decrease the relative contribution of seagrass carbon to RSOC pools. Additionally, significantly different fungal communities were observed between adjacent T. hemprichii and E. acoroides areas, which coincided with elevated RSOC-decomposing enzyme activity in T. hemprichii meadows, even though the mixed seagrass meadow received allochthonous SOC and RSOC from the same sources. These results suggest that nutrient loading stimulated fungal activity and community shifts specific to the local seagrass species, thereby causing fine-scale (within-meadow) variability in SOC cycling in response to nutrient loading. This study provides evidence that fungal composition and activity, mediated by human activities (e.g. nutrient loading), can be an important influence on seagrass blue carbon accumulation and remineralisation.
Publisher: Ubiquity Press, Ltd.
Date: 10-2021
DOI: 10.5334/JORS.249
Publisher: Oxford University Press (OUP)
Date: 15-03-2017
Abstract: Seagrass ecosystems are significant carbon sinks, and their resident microbial communities ultimately determine the quantity and quality of carbon sequestered. However, environmental perturbations have been predicted to affect microbial-driven seagrass decomposition and subsequent carbon sequestration. Utilizing techniques including 16S-rDNA sequencing, solid-state NMR and microsensor profiling, we tested the hypothesis that elevated seawater temperatures and eutrophication enhance the microbial decomposition of seagrass leaf detritus and rhizome/root tissues. Nutrient additions had a negligible effect on seagrass decomposition, indicating an absence of nutrient limitation. Elevated temperatures caused a 19% higher biomass loss for aerobically decaying leaf detritus, coinciding with changes in bacterial community structure and enhanced lignocellulose degradation. Although, community shifts and lignocellulose degradation were also observed for rhizome/root decomposition, anaerobic decay was unaffected by temperature. These observations suggest that oxygen availability constrains the stimulatory effects of temperature increases on bacterial carbon remineralization, possibly through differential temperature effects on bacterial functional groups, including putative aerobic heterotrophs (e.g. Erythrobacteraceae, Hyphomicrobiaceae) and sulfate reducers (e.g. Desulfobacteraceae). Consequently, under elevated seawater temperatures, carbon accumulation rates may diminish due to higher remineralization rates at the sediment surface. Nonetheless, the anoxic conditions ubiquitous to seagrass sediments can provide a degree of carbon protection under warming seawater temperatures.
Publisher: Elsevier BV
Date: 06-2014
DOI: 10.1016/J.MARPOLBUL.2013.07.038
Abstract: Seagrasses are among the planet's most effective natural ecosystems for sequestering (capturing and storing) carbon (C) but if degraded, they could leak stored C into the atmosphere and accelerate global warming. Quantifying and modelling the C sequestration capacity is therefore critical for successfully managing seagrass ecosystems to maintain their substantial abatement potential. At present, there is no mechanism to support carbon financing linked to seagrass. For seagrasses to be recognised by the IPCC and the voluntary C market, standard stock assessment methodologies and inventories of seagrass C stocks are required. Developing accurate C budgets for seagrass meadows is indeed complex we discuss these complexities, and, in addition, we review techniques and methodologies that will aid development of C budgets. We also consider a simple process-based data assimilation model for predicting how seagrasses will respond to future change, accompanied by a practical list of research priorities.
Publisher: Elsevier BV
Date: 04-2021
Publisher: Springer Science and Business Media LLC
Date: 02-2022
DOI: 10.1007/S10533-022-00890-3
Abstract: The ratio of isotopes of carbon ( 13 C: 12 C or δ 13 C) and nitrogen ( 15 N: 14 N or δ 15 N) are common indicators of the flow and storage of organic matter in coastal wetland research. Effective use of these indicators requires quantification and understanding of: (1) the variability of isotope signatures of potential organic matter source materials and (2) the influence of organic matter decomposition on isotopic signatures. While it is well-established that organic matter characteristics change during the decomposition process, there has been little direct quantification of any concurrent shifts in isotope signatures for coastal detritus. In this study, we addressed this by quantifying: (1) shifts in s le composition using solid-state 13 C Nuclear Magnetic Resonance (NMR) spectroscopy and (2) shifts in δ 13 C and δ 15 N signatures of coastal plant tissues from field litterbag experiments. We observed significant shifts in 13 C NMR spectra across the course of deployment for all four plant tissues assessed (leaves of mangrove Avicennia marina branchlets of supratidal tree Casuarina glauca leaf wrack and roots/rhizomes of the seagrass Zostera muelleri ), driven largely by the preferential loss of labile constituents and concentration of more resistant macromolecules, such as lignin and leaf waxes. While there were shifts in isotope ratios for all species, these varied in direction and magnitude among species, tissue type and isotopes. This included δ 13 C enrichments of up to 3.1‰ and 2.4‰ in leaves of A. marina , and branchlets of C. glauca , respectively, but δ 13 C depletions of up to 4.0‰ for Z. muelleri . Shifts in δ 15 N varied among species and tissue types, with few clear temporal patterns. Partial least squares regression analyses showed that some tissue isotope signatures can be reliably predicted on the basis of s le composition ( 13 C NMR spectra), however, multiple inter- and intra-species variations preclude a simple explanation of isotopic signature shifts on the basis of plant-material molecular shifts alone. Further, we cannot preclude the potential influence of microbe-associated organic matter on s le composition or isotopic signatures. Our findings emphasise the importance of considering decomposition effects on stable isotope signatures in blue carbon ecosystems. Isotope approaches will remain a valuable tool in coastal ecosystem research, but require robust experimental approaches (including appropriate use of decomposed end-members or fractionation correction factors quantification of microbial organic matter) and quantification of decomposition dynamics for specific plant tissues and environmental settings.
Publisher: Frontiers Media SA
Date: 13-06-2017
Publisher: Springer Science and Business Media LLC
Date: 08-2018
Publisher: Elsevier BV
Date: 02-2022
DOI: 10.1016/J.ENVPOL.2021.118637
Abstract: Freshwater wetlands are natural sinks of carbon yet, wetland conversion for agricultural uses can shift these carbon sinks into large sources of greenhouse gases. We know that the anthropogenic alteration of wetland hydrology and the broad use of N-fertilizers can modify biogeochemical cycling, however, the extent of their combined effect on greenhouse gases exchange still needs further research. Moreover, there has been recent interest in wetlands rehabilitation and preservation by improving natural water flow and by seeking alternative solutions to nutrient inputs. In a microcosm setting, we experimentally exposed soils to three inundation treatments (Inundated, Moist, Drained) and a nutrient treatment by adding high nitrogen load (300 kg ha
Publisher: Elsevier BV
Date: 02-2020
DOI: 10.1016/J.JENVMAN.2019.109971
Abstract: Wetland ecosystems have a disproportionally large influence on the global carbon cycle. They can act as carbon sinks or sources depending upon their location, type, and condition. Rehabilitation of wetlands is gaining popularity as a nature-based approach to helping mitigate climate change however, few studies have empirically tested the carbon benefits of wetland restoration, especially in freshwater environments. Here we investigated the effects of passive rehabilitation (i.e. fencing and agricultural release) of 16 semi-arid rain-filled freshwater wetlands in southeastern Australia. Eight control sites were compared with older (>10 year) or newer (2-5 year) rehabilitated sites, dominated by graminoids or eucalypts. Carbon stocks (soils and plant biomass), and emissions (carbon dioxide - CO
Publisher: Springer Science and Business Media LLC
Date: 06-07-2022
Publisher: Frontiers Media SA
Date: 02-2019
Publisher: Elsevier BV
Date: 02-2019
DOI: 10.1016/J.JENVMAN.2018.10.047
Abstract: Seagrass ecosystems have received a great deal of attention recently for their ability to capture and store carbon, thereby helping to mitigate climate change. However, their carbon-sink capacity could be offset somewhat if exported plant material - which accounts for ∼90% of total leaf production - undergoes microbial breakdown and is emitted into the atmosphere as a greenhouse gas. Here we measured emissions (CO
Publisher: Elsevier BV
Date: 2017
DOI: 10.1016/J.SCITOTENV.2016.09.021
Abstract: Excessive accumulation of plant 'wrack' on beaches as a result of coastal development and beach modification (e.g. groin installation) is a global problem. This study investigated the potential for converting beach-cast seagrass wrack into biochar as a 'climate-friendly' disposal option for resource managers. Wrack s les from 11 seagrass species around Australia were initially screened for their biochar potential using pyrolysis techniques, and then two species - Posidonia australis and Zostera muelleri - underwent detailed analyses. Both species had high levels of refractory materials and high conversion efficiency (48-57%) of plant carbon into biochar carbon, which is comparable to high-quality terrestrial biochar products. P. australis wrack gave higher biochar yields than Z. muelleri consistent with its higher initial carbon content. According to
Publisher: Elsevier BV
Date: 11-2013
Publisher: IOP Publishing
Date: 02-2018
Publisher: Frontiers Media SA
Date: 07-02-2020
Publisher: Elsevier BV
Date: 09-2011
DOI: 10.1016/J.PLAPHY.2011.06.006
Abstract: Seagrass meadows are a vital component of coastal ecosystems and have experienced declines in abundance due to a series of environmental stressors including elevated salinity and incidence of disease. This study evaluated the impacts of short-term hypersalinity stress on the early stages of infection in Thalassia testudinum Banks ex König by assessing changes in cellular physiology and metabolism. Seagrass short shoots were exposed to ambient (30 psu) and elevated (45 psu) salinities for 7 days and subsequently infected for one week by the causative pathogen of wasting disease, Labyrinthula sp. The occurrence of wasting disease was significantly lower in the hypersalinity treatments. Additionally, while exposure to elevated salinity caused a reduction in chlorophyll a and b content, T. testudinum's health, in terms of photochemical efficiency, was not significantly compromised by hypersalinity or infection. In contrast, plant respiratory demand was significantly enhanced as a function of infection. Elevated salinity caused T. testudinum to significantly increase its in vivo H(2)O(2) concentrations to levels that exceeded those which inhibited Labyrinthula growth in a liquid in vitro assay. The results suggest that while short-term exposure to hypersalinity alters selected cellular processes this does not necessarily lead to an immediate increase in wasting disease susceptibility.
Publisher: Elsevier BV
Date: 02-2020
DOI: 10.1016/J.SCITOTENV.2019.135806
Abstract: Seagrass biomass represents an important source of organic carbon that can contribute to long-term sediment carbon stocks in coastal ecosystems. There is little empirical data on the long-term microbial decomposition of seagrass detritus, despite this process being one of the key drivers of carbon-cycling in coastal ecosystems, that is, it influences the amount and quality of carbon available for sequestration. Here, our goal was to investigate how litter quality (leaf vs. rhizome/root) and the microbial communities involved in organic matter remineralisation shift over a 2-year field decomposition study north of Sydney, Australia using the temperate seagrass Zostera muelleri. The sites varied in bulk sediment characteristics and the sediment-associated microbial communities, but these variables overall had little influence on long-term seagrass decomposition rates or seagrass-associated microbiomes. The results showed a clear succession of bacterial and archaeal communities for both tissues types from r-strategists such as α- and γ-proteobacteria to K-strategies, including δ-proteobacteria, Bacteroidia and Spirochaetes. We used a new mathematical model to capture how decay rates varied over time and found that two decomposition events occurred for some seagrass leaf s les, possibly due to exudate input from living seagrass roots growing into the litter bag. The new model also indicated that conventional single exponential models overestimate long-term decay rates, and we detected for the first time the refractory, or stable, phase of decomposition for rhizome/root biomass. The stable phase began at approximately 20% mass remaining and after 600 days, and the persistence of rhizome/root biomass was attributed to the anoxic conditions and the preservation of refractory organic matter. While we predict that rhizome/root biomass will contribute more to the long-term sediment carbon stocks, the preservation of leaf carbon may be enhanced at locations were sedimentation is high and burial in anoxic conditions is rapid and constant.
Publisher: Frontiers Media SA
Date: 15-01-2021
DOI: 10.3389/FMARS.2020.603722
Abstract: For millennia, coastal and marine ecosystems have adapted and flourished in the Red Sea’s unique environment. Surrounded by deserts on all sides, the Red Sea is subjected to high dust inputs and receives very little freshwater input, and so harbors a high salinity. Coral reefs, seagrass meadows, and mangroves flourish in this environment and provide socio-economic and environmental benefits to the bordering coastlines and countries. Interestingly, while coral reef ecosystems are currently experiencing rapid decline on a global scale, those in the Red Sea appear to be in relatively better shape. That said, they are certainly not immune to the stressors that cause degradation, such as increasing ocean temperature, acidification and pollution. In many regions, ecosystems are already severely deteriorating and are further threatened by increasing population pressure and large coastal development projects. Degradation of these marine habitats will lead to environmental costs, as well as significant economic losses. Therefore, it will result in a missed opportunity for the bordering countries to develop a sustainable blue economy and integrate innovative nature-based solutions. Recognizing that securing the Red Sea ecosystems’ future must occur in synergy with continued social and economic growth, we developed an action plan for the conservation, restoration, and growth of marine environments of the Red Sea. We then investigated the level of resources for financial and economic investment that may incentivize these activities. This study presents a set of commercially viable financial investment strategies, ecological innovations, and sustainable development opportunities, which can, if implemented strategically, help ensure long-term economic benefits while promoting environmental conservation. We make a case for investing in blue natural capital and propose a strategic development model that relies on maintaining the health of natural ecosystems to safeguard the Red Sea’s sustainable development.
Publisher: SOIL ORGANISMS 93(1)
Date: 2021
Publisher: Inter-Research Science Center
Date: 28-08-2018
DOI: 10.3354/DAO03266
Abstract: Marine heterotrophic protists of the Labyrinthulomycota are of interest for their biotechnological (e.g. thraustochytrid production of lipids) and ecological (e.g. wasting disease and rapid blight by pathogens of the genus Labyrinthula) applications culture-based laboratory studies are a central technique of this research. However, maintaining such microorganism cultures can be labour- and cost-intensive, with a high risk of culture contamination and die-off over time. Deep-freeze storage, or cryopreservation, can be used to maintain culture back-ups, as well as to preserve the genetic and phenotypic properties of the microorganisms however, this method has not been tested for the ubiquitous marine protists Labyrinthula spp. In this study, we trialled 12 cryopreservation protocols on 3 Labyrinthula sp. isolates of varying colony morphological traits. After 6 mo at -80°C storage, the DMSO and glycerol protocols were the most effective cryoprotectants compared to methanol (up to 90% success vs. 50% success, respectively). The addition of 30% horse serum to the cryoprotectant solution increased Labyrinthula sp. growth success by 20-30%. We expect that these protocols will provide extra security for culture-based studies, as well as opportunities for long-term research on key Labyrinthula sp. isolates.
Publisher: Wiley
Date: 10-04-2017
DOI: 10.1002/FEE.1484
Publisher: Elsevier BV
Date: 09-2018
Publisher: MDPI AG
Date: 26-10-2022
DOI: 10.3390/MICROORGANISMS10112121
Abstract: The capacity of Blue Carbon Ecosystems to act as carbon sinks is strongly influenced by the metabolism of soil-associated microbes, which ultimately determine how much carbon is accumulated or returned to the atmosphere. The rapid evolution of sequencing technologies has facilitated the generation of tremendous amounts of data on what taxa comprise belowground microbial assemblages, largely available as isolated datasets, offering an opportunity for synthesis research that informs progress on understanding Blue Carbon microbiomes. We identified questions that can be addressed with a synthesis approach, including the high variability across datasets, space, and time due to differing s ling techniques, ecosystem or vegetation specificity, and the relationship between microbiome community and edaphic properties, particularly soil carbon. To address these questions, we collated 34 16S rRNA licon sequencing datasets, including bulk soil or rhizosphere from seagrass, mangroves, and saltmarshes within publicly available repositories. We identified technical and theoretical challenges that precluded a synthesis of multiple studies with currently available data, and opportunities for addressing the knowledge gaps within Blue Carbon microbial ecology going forward. Here, we provide a standardisation toolbox that supports enacting tasks for the acquisition, management, and integration of Blue Carbon-associated sequencing data and metadata to potentially elucidate novel mechanisms behind Blue Carbon dynamics.
Publisher: Elsevier BV
Date: 05-2023
Publisher: Elsevier BV
Date: 06-2017
DOI: 10.1016/J.MARENVRES.2016.06.006
Abstract: Seagrass species form important marine and estuarine habitats providing valuable ecosystem services and functions. Coastal zones that are increasingly impacted by anthropogenic development have experienced substantial declines in seagrass abundance around the world. Australia, which has some of the world's largest seagrass meadows and is home to over half of the known species, is not immune to these losses. In 1999 a review of seagrass ecosystems knowledge was conducted in Australia and strategic research priorities were developed to provide research direction for future studies and management. Subsequent rapid evolution of seagrass research and scientific methods has led to more than 70% of peer reviewed seagrass literature being produced since that time. A workshop was held as part of the Australian Marine Sciences Association conference in July 2015 in Geelong, Victoria, to update and redefine strategic priorities in seagrass research. Participants identified 40 research questions from 10 research fields (taxonomy and systematics, physiology, population biology, sediment biogeochemistry and microbiology, ecosystem function, faunal habitats, threats, rehabilitation and restoration, mapping and monitoring, management tools) as priorities for future research on Australian seagrasses. Progress in research will rely on advances in areas such as remote sensing, genomic tools, microsensors, computer modeling, and statistical analyses. A more interdisciplinary approach will be needed to facilitate greater understanding of the complex interactions among seagrasses and their environment.
Publisher: Springer Netherlands
Date: 2017
Publisher: Elsevier BV
Date: 02-2018
Publisher: Elsevier BV
Date: 04-2015
Publisher: Frontiers Media SA
Date: 27-08-2019
Publisher: Elsevier BV
Date: 04-2021
Publisher: Elsevier BV
Date: 11-2018
Publisher: American Geophysical Union (AGU)
Date: 06-2021
DOI: 10.1029/2021GB006935
Abstract: Seagrass meadows rank among the most significant organic carbon (C org ) sinks on earth. We examined the variability in seagrass soil C org stocks and composition across Australia and identified the main drivers of variability, applying a spatially hierarchical approach that incorporates bioregions and geomorphic settings. Top 30 cm soil C org stocks were similar across bioregions and geomorphic settings (min‐max: 20–26 Mg C org ha −1 ), but meadows formed by large species (i.e., Amphibolis spp. and Posidonia spp.) showed higher stocks (24–29 Mg C org ha −1 ) than those formed by smaller species (e.g., Halodule, Halophila, Ruppia, Zostera, Cymodocea, and Syringodium 12–21 Mg C org ha −1 ). In temperate coastal meadows dominated by large species, soil C org stocks mainly derived from seagrass C org (72 ± 2%), while allochthonous C org dominated soil C org stocks in meadows formed by small species in temperate and tropical estuarine meadows (64 ± 5%). In temperate coastal meadows, soil C org stocks were enhanced by low hydrodynamic exposure associated with high mud and seagrass C org contents. In temperate estuarine meadows, soil C org stocks were enhanced by high contributions of seagrass C org , low to moderate solar radiation, and low human pressure. In tropical estuarine meadows formed by small species, large soil C org stocks were mainly associated with low hydrodynamic energy, low rainfall, and high solar radiation. These results showcase that bioregion and geomorphic setting are not necessarily good predictors of soil C org stocks and that site‐specific estimates based on local environmental factors are needed for Blue Carbon projects and greenhouse gases accounting purposes.
Publisher: Springer Science and Business Media LLC
Date: 02-10-2019
DOI: 10.1038/S41467-019-12176-8
Abstract: Policies aiming to preserve vegetated coastal ecosystems (VCE tidal marshes, mangroves and seagrasses) to mitigate greenhouse gas emissions require national assessments of blue carbon resources. Here, we present organic carbon (C) storage in VCE across Australian climate regions and estimate potential annual CO 2 emission benefits of VCE conservation and restoration. Australia contributes 5–11% of the C stored in VCE globally (70–185 Tg C in aboveground biomass, and 1,055–1,540 Tg C in the upper 1 m of soils). Potential CO 2 emissions from current VCE losses are estimated at 2.1–3.1 Tg CO 2 -e yr -1 , increasing annual CO 2 emissions from land use change in Australia by 12–21%. This assessment, the most comprehensive for any nation to-date, demonstrates the potential of conservation and restoration of VCE to underpin national policy development for reducing greenhouse gas emissions.
Publisher: Springer Science and Business Media LLC
Date: 21-10-2014
DOI: 10.1038/S41559-019-0999-7
Abstract: Research into the microbiomes of natural environments is changing the way ecologists and evolutionary biologists view the importance of microorganisms in ecosystem function. This is particularly relevant in ocean environments, where microorganisms constitute the majority of biomass and control most of the major biogeochemical cycles, including those that regulate Earth's climate. Coastal marine environments provide goods and services that are imperative to human survival and well-being (for ex le, fisheries and water purification), and emerging evidence indicates that these ecosystem services often depend on complex relationships between communities of microorganisms (the 'microbiome') and the environment or their hosts - termed the 'holobiont'. Understanding of coastal ecosystem function must therefore be framed under the holobiont concept, whereby macroorganisms and their associated microbiomes are considered as a synergistic ecological unit. Here, we evaluate the current state of knowledge on coastal marine microbiome research and identify key questions within this growing research area. Although the list of questions is broad and ambitious, progress in the field is increasing exponentially, and the emergence of large, international collaborative networks and well-executed manipulative experiments are rapidly advancing the field of coastal marine microbiome research.
Publisher: Elsevier BV
Date: 04-2018
DOI: 10.1016/J.SCITOTENV.2017.11.193
Abstract: Microbes are the 'gatekeepers' of the marine carbon cycle, yet the mechanisms for how microbial metabolism drives carbon sequestration in coastal ecosystems are still being defined. The proximity of coastal habitats to runoff and disturbance creates ideal conditions for microbial priming, i.e., the enhanced remineralisation of stored carbon in response to fresh substrate availability and oxygen introduction. Microbial priming, therefore, poses a risk for enhanced CO
Publisher: Elsevier BV
Date: 07-2021
Publisher: Elsevier BV
Date: 2018
DOI: 10.1016/J.MICRES.2017.10.003
Abstract: Marine disease ecology is a growing field of research, particularly for host organisms negatively impacted by a changing climate and anthropogenic activities. A decrease in health and increase in susceptibility to disease has been hypothesised as the mechanism behind wide-spread seagrass die-offs related to wasting disease in the past. However, seagrass wasting disease and the causative pathogen, Labyrinthula, have been vastly understudied in the southern hemisphere. Our aim was to build on the current knowledge of Australian Labyrinthula descriptions and phylogeny, while also providing a first look at wasting disease ecology in Australia. Five seagrass species along a 750km stretch of coastline in southeastern Australia were s led. The resulting 38 Labyrinthula isolates represented a ersity of morphotypes and five haplotypes of varying phylogenetic clade positions and virulence. The haplotypes clustered with previously-described phylogenetic clades containing isolates from Asia, USA and Europe. Pathogenicity tests confirmed, for the first time, the presence of at least two pathogenic haplotypes in Australia. While historically there have been no reports of wasting disease-related seagrass habitat loss, the presence of pathogenic Labyrinthula highlights the need for disease monitoring and research to understand seagrass wasting disease ecology in Australia.
Publisher: Wiley
Date: 27-09-2018
DOI: 10.1002/LNO.11044
Publisher: Springer Science and Business Media LLC
Date: 07-01-2021
Publisher: Frontiers Media SA
Date: 29-05-2020
Start Date: 02-2021
End Date: 12-2024
Amount: $462,763.00
Funder: Australian Research Council
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