ORCID Profile
0000-0002-8836-4815
Current Organisation
RMIT University
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Soil Physics | Plant Biology | Plant Developmental and Reproductive Biology | Ecological Impacts of Climate Change
Ecosystem Adaptation to Climate Change | Mountain and High Country Soils | Mountain and High Country Flora, Fauna and Biodiversity |
Publisher: Wiley
Date: 08-11-2012
Publisher: Springer Science and Business Media LLC
Date: 22-07-2022
DOI: 10.1007/S00248-022-02071-Z
Abstract: Peatland ecosystems cover only 3% of the world's land area however, they store one-third of the global soil carbon (C). Microbial communities are the main drivers of C decomposition in peatlands, yet we have limited knowledge of their structure and function. While the microbial communities in the Northern Hemisphere peatlands are well documented, we have limited understanding of microbial community composition and function in the Southern Hemisphere peatlands, especially in Australia. We investigated the vertical stratification of prokaryote and fungal communities from Wellington Plains peatland in the Australian Alps. Within the peatland complex, bog peat was s led from the intact peatland and dried peat from the degraded peatland along a vertical soil depth gradient (i.e., acrotelm, mesotelm, and catotelm). We analyzed the prokaryote and fungal community structure, predicted functional profiles of prokaryotes using PICRUSt, and assigned soil fungal guilds using FUNGuild. We found that the structure and function of prokaryotes were vertically stratified in the intact bog. Soil carbon, manganese, nitrogen, lead, and sodium content best explained the prokaryote composition. Prokaryote richness was significantly higher in the intact bog acrotelm compared to degraded bog acrotelm. Fungal composition remained similar across the soil depth gradient however, there was a considerable increase in saprotroph abundance and decrease in endophyte abundance along the vertical soil depth gradient. The abundance of saprotrophs and plant pathogens was two-fold higher in the degraded bog acrotelm. Soil manganese and nitrogen content, electrical conductivity, and water table level (cm) best explained the fungal composition. Our results demonstrate that both fungal and prokaryote communities are shaped by soil abiotic factors and that peatland degradation reduces microbial richness and alters microbial functions. Thus, current and future changes to the environmental conditions in these peatlands may lead to altered microbial community structures and associated functions which may have implications for broader ecosystem function changes in peatlands.
Publisher: American Association for the Advancement of Science (AAAS)
Date: 15-12-2017
Publisher: Elsevier BV
Date: 10-2021
Publisher: Elsevier BV
Date: 11-2013
DOI: 10.1016/J.SCITOTENV.2013.01.035
Abstract: Designed, green infrastructures are becoming a customary feature of the urban landscape. Sustainable technologies for stormwater management, and biofilters in particular, are increasingly used to reduce stormwater runoff volumes and peaks as well as improve the water quality of runoff discharged into urban water bodies. Although a lot of research has been devoted to these technologies, their effect in terms of greenhouse gas fluxes in urban areas has not been yet investigated. We present the first study aimed at quantifying greenhouse gas fluxes between the soil of stormwater biofilters and the atmosphere. N2O, CH4, and CO2 were measured periodically over a year in two operational vegetated biofiltration cells at Monash University in Melbourne, Australia. One cell had a saturated zone at the bottom, and compost and hardwood mulch added to the sandy loam filter media. The other cell had no saturated zone and was composed of sandy loam. Similar sedges were planted in both cells. The biofilter soil was a small N2O source and a sink for CH4 for most measurement events, with occasional large emissions of both N2O and CH4 under very wet conditions. Average N2O fluxes from the cell with the saturated zone were almost five-fold greater (65.6 μg N2O-N m(-2) h(-1)) than from the other cell (13.7 μg N2O-N m(-2) h(-1)), with peaks up to 1100 μg N2O-N m(-2) h(-1). These N2O fluxes are of similar magnitude to those measured in other urban soils, but with larger peak emissions. The CH4 sink strength of the cell with the saturated zone (-3.8 μg CH4-C m(-2) h(-1)) was lower than the other cell (-18.3 μg CH4-C m(-2) h(-1)). Both cells of the biofilter appeared to take up CH4 at similar rates to other urban lawn systems however, the biofilter cells displayed occasional large CH4 emissions following inflow events, which were not seen in other urban systems. CO2 fluxes increased with soil temperature in both cells, and in the cell without the saturated zone CO2 fluxes decreased as soil moisture increased. Other studies of CO2 fluxes from urban soils have found both similar and larger CO2 emissions than those measured in the biofilter. The results of this study suggest that the greenhouse gas footprint of stormwater treatment warrant consideration in the planning and implementation of engineered green infrastructures.
Publisher: American Geophysical Union (AGU)
Date: 02-2022
DOI: 10.1029/2021GB007057
Abstract: Peatlands contain a significant fraction of global soil carbon, but how these reservoirs will respond to the changing climate is still relatively unknown. A global picture of the variations in peat organic matter chemistry will aid our ability to gauge peatland soil response to climate. The goal of this research is to test the hypotheses that (a) peat carbohydrate content, an indicator of soil organic matter reactivity, will increase with latitude and decrease with mean annual temperatures, (b) while peat aromatic content, an indicator of recalcitrance, will vary inversely, and (c) elevation will have a similar effect to latitude. We used Fourier Transform Infrared Spectroscopy to examine variations in the organic matter functional groups of 1034 peat s les collected from 10 to 20, 30–40, and 60–70 cm depths at 165 in idual sites across a latitudinal gradient of 79°N–65°S and from elevations of 0–4,773 m. Carbohydrate contents of high latitude peat were significantly greater than peat originating near the equator, while aromatic content showed the opposite trend. For peat from similar latitudes but different elevations, the carbohydrate content was greater and aromatic content was lower at higher elevations. Higher carbohydrate content at higher latitudes indicates a greater potential for mineralization, whereas the chemical composition of low latitude peat is consistent with their apparent relative stability in the face of warmer temperatures. The combination of low carbohydrates and high aromatics at warmer locations near the equator suggests the mineralization of high latitude peat until reaching recalcitrance under a new temperature regime.
Publisher: SAGE Publications
Date: 08-2010
DOI: 10.3851/IMP1645
Abstract: Therapy for chronic hepatitis B with tenofovir disoproxil fumarate (TDF) and lamivudine (3TC) or emtricitabine (FTC) is currently recommended for HIV–HBV coinfection. However, there is limited randomized data on the efficacy of combined therapy with TDF and FTC, especially in antiretroviral (ARV)-naive patients. This was a prospective randomized clinical trial comparing the efficacy of HBV monotherapy with FTC versus TDF/FTC combination therapy in ARV-naive HIV– HBV coinfection. HIV–HBV-coinfected patients initiating ARV were randomized to either FTC/zidovudine/efavirenz (EFV n=6) or TDF/FTC/EFV ( n=10). The primary end point was the time-weighted area under the curve (TWAUC) of HBV DNA at 48 weeks. The median baseline CD4 + T-cell count was 64 cells/μl (interquartile range [IQR] 36–172), plasma HIV type-1 RNA was 4.90 log 10 copies/ml (IQR 4.58–5.44) and plasma HBV DNA was 8.76 log 10 copies/ml (IQR 8.45–8.82). A total of 11/16 (69%) patients were hepatitis B e antigen (HBeAg)-positive. The median TWAUC decrease in HBV DNA was -5.32 log 10 copies/ml in the TDF/FTC group compared with -3.25 log 10 copies/ml in the FTC group ( P=0.03). At week 48, 90% of the TDF/FTC group and 33% of the FTC group had plasma HBV DNA copies/ ml ( P=0.036, intention-to-treat analysis). HBeAg loss was observed in 4/11 (36%) HBeAg-positive patients. Hepatic fares were observed in 3/16 (19%) of patients. TDF/FTC combination therapy resulted in a significantly greater decrease in HBV DNA than FTC monotherapy, with a greater proportion of patients with undetectable HBV DNA at week 48. Our study supports the current recommendation of ARV containing TDF/FTC as the treatment of choice for patients with HIV–HBV coinfection.
Publisher: American Geophysical Union (AGU)
Date: 06-2016
DOI: 10.1002/2016WR018663
Publisher: CSIRO Publishing
Date: 21-03-2023
DOI: 10.1071/SR22251
Abstract: Context The Australian Alps are recognised by UNESCO as a globally significant mountain range. Soils underpin all of these ecosystem services. However, sparse data exists on alpine soils. Aims and methods We explored nitrogen dynamics of soils from four high mountain sites, using a combination of new and established field and laboratory techniques. Key results Organic and inorganic N were of the same order of magnitude, with around twice as much inorganic N as organic N. Forty three small ( Da) organic N compounds were detected, with concentrations 30 times greater in microbial and salt-extractable pools than free in the soil solution. The net N mineralisation rate decreased four-fold over the growing season. The organic matter decomposition rate was close to the global mean (k = 0.017), while the stabilisation factor was high (0.28) in comparison with other ecosystems globally. Conclusions These results begin to illuminate the complexity of the belowground processes that have formed the high C soils of the Australian Alps. The combination of moderate turnover times and high stabilization of organic matter support Costin’s theory that these mountain soils formed in place as a result of biological activity, rather than reflecting their geological substrata. The pools of organic N adsorbed to mineral soil surfaces and bound up within microbes lend support to a theory of tight N cycling, with little organic or inorganic N free in the soil solution. Implications This new knowledge of soil N dynamics can support land managers to design successful restoration works to preserve alpine soil ecosystem services impacted by climate change, feral animal disturbance, weed invasion and the increase in summer tourism infrastructure.
Publisher: Copernicus GmbH
Date: 25-01-2012
Abstract: Abstract. Savanna ecosystems are subjected to accelerating land use change as human demand for food and forest products increases. Land use change has been shown to both increase and decrease greenhouse gas fluxes from savannas and considerable uncertainty exists about the non-CO2 fluxes from the soil. We measured methane (CH4), nitrous oxide (N2O) and carbon dioxide (CO2) over a complete wet-dry seasonal cycle at three replicate sites of each of three land uses: savanna, young pasture and old pasture (converted from savanna 5–7 and 25–30 yr ago, respectively) in the Douglas Daly region of Northern Australia. The effect of break of season rains at the end of the dry season was investigated with two irrigation experiments. Land use change from savanna to pasture increased net greenhouse gas fluxes from the soil. Pasture sites were a weaker sink for CH4 than savanna sites and, under wet conditions, old pastures turned from being sinks to a significant source of CH4. Nitrous oxide emissions were generally very low, in the range of 0 to 5 μg N2O-N m−2 h−1, and under dry conditions soil uptake of N2O was apparent. Break of season rains produced a small, short lived pulse of N2O up to 20 μg N2O-N m−2 h−1, most evident in pasture soil. Annual cumulative soil CO2 fluxes increased after clearing, with savanna (14.6 t CO2-C ha−1 yr−1) having the lowest fluxes compared to old pasture (18.5 t CO2-C ha−1 yr−1) and young pasture (20.0 t CO2-C ha−1 yr−1). Clearing savanna increased soil-based greenhouse gas emissions from 53 to ∼ 70 t CO2-equivalents, a 30% increase dominated by an increase in soil CO2 emissions and shift from soil CH4 sink to source. Seasonal variation was clearly driven by soil water content, supporting the emerging view that soil water content is a more important driver of soil gas fluxes than soil temperature in tropical ecosystems where temperature varies little among seasons.
Publisher: Oxford University Press (OUP)
Date: 16-12-2022
DOI: 10.1093/BIOINFORMATICS/BTAC808
Abstract: We present YaHS, a user-friendly command-line tool for the construction of chromosome-scale scaffolds from Hi-C data. It can be run with a single-line command, requires minimal input from users (an assembly file and an alignment file) which is compatible with similar tools and provides assembly results in multiple formats, thereby enabling rapid, robust and scalable construction of high-quality genome assemblies with high accuracy and contiguity. YaHS is implemented in C and licensed under the MIT License. The source code, documentation and tutorial are available at anger-tol/yahs. Supplementary data are available at Bioinformatics online.
Publisher: Springer Science and Business Media LLC
Date: 29-03-2017
Publisher: Elsevier BV
Date: 2020
DOI: 10.1016/J.SCITOTENV.2019.134199
Abstract: Over recent decades, the combination of deforestation, peat drainage and fires have resulted in widespread degradation of Southeast Asia's tropical peatlands. These disturbances are generally thought to increase peat soil bulk density through peat drying and shrinkage, compaction, and consolidation. Biological oxidation and fires burning across these landscapes also consume surface peat, exposing older peat strata. The prevalence and severity of deforestation, peat drainage and fire are typically greater closer to canals, built to drain peatlands and provide access routes for people. We compared bulk densities of 240cm peat profiles from intact forests and degraded peatlands broadly, and also assessed differences between degraded peatlands near-to-canals (50-200m from the nearest canal) and far-from-canals (300+ m from the nearest canal). The effects of vegetation type and fire frequency on bulk density, irrespective of the distance from canal, were also investigated. Mean bulk density values ranged between 0.08 and 0.16gcm
Publisher: Wiley
Date: 15-03-2010
Publisher: Wiley
Date: 02-2023
DOI: 10.1111/CSP2.12891
Abstract: Threatened ecosystem conservation requires an understanding of the effectiveness of management and the challenges hindering successful protection and recovery. Bringing together researchers, land managers and policymakers to identify key threats, management needs, and knowledge gaps provides a unified account of the evidence and tools needed to improve threatened ecosystem management. We undertook a research prioritization process for Australian alpine and subalpine peatlands with experts across policy, research, and management. Through in idual interviews, structured group discussions, and voting, we generated 25 priority research questions that, if addressed, would enhance our capacity to conserve peatlands. Knowledge gaps spanned four topics: understanding peatland dynamics, impacts of threats, methods to manage these, and the effectiveness of management. Consistent monitoring standards, an open‐access knowledge platform and commitment to long‐term joint research and management were identified as vital. This collaboration enabled development of a shared agenda of research priorities to target knowledge gaps for informing policy and management of threatened alpine peatlands. Our findings substantiate the importance of stronger ongoing collaboration among researchers, land managers and policymakers across jurisdictions to support conservation.
Publisher: Elsevier BV
Date: 02-2013
Publisher: Springer Science and Business Media LLC
Date: 31-12-2021
Publisher: Public Library of Science (PLoS)
Date: 23-11-2022
DOI: 10.1371/JOURNAL.PONE.0275149
Abstract: Peatlands account for 15 to 30% of the world’s soil carbon (C) stock and are important controls over global nitrogen (N) cycles. However, C and N concentrations are known to vary among peatlands contributing to the uncertainty of global C inventories, but there are few global studies that relate peatland classification to peat chemistry. We analyzed 436 peat cores s led in 24 countries across six continents and measured C, N, and organic matter (OM) content at three depths down to 70 cm. Sites were distinguished between northern (387) and tropical (49) peatlands and assigned to one of six distinct broadly recognized peatland categories that vary primarily along a pH gradient. Peat C and N concentrations, OM content, and C:N ratios differed significantly among peatland categories, but few differences in chemistry with depth were found within each category. Across all peatlands C and N concentrations in the 10–20 cm layer, were 440 ± 85.1 g kg -1 and 13.9 ± 7.4 g kg -1 , with an average C:N ratio of 30.1 ± 20.8. Among peatland categories, median C concentrations were highest in bogs, poor fens and tropical sw s (446–532 g kg -1 ) and lowest in intermediate and extremely rich fens (375–414 g kg -1 ). The C:OM ratio in peat was similar across most peatland categories, except in deeper s les from ombrotrophic tropical peat sw s that were higher than other peatlands categories. Peat N concentrations and C:N ratios varied approximately two-fold among peatland categories and N concentrations tended to be higher (and C:N lower) in intermediate fens compared with other peatland types. This study reports on a unique data set and demonstrates that differences in peat C and OM concentrations among broadly classified peatland categories are predictable, which can aid future studies that use land cover assessments to refine global peatland C and N stocks.
Publisher: Copernicus GmbH
Date: 23-01-2013
Abstract: Abstract. Twelve cattle were kept for three days in a circular area of 16 m radius on short pasture and fed with freshly-cut pasture. Ammonia (NH3) emissions from the urine and dung excreted by the cattle were measured with a micrometeorological mass-balance method, during the cattle presence and for 10 subsequent days. Daily-integrated emission rates peaked on Day 3 of the experiment (last day of cattle presence) and declined steadily for five days thereafter. Urine patches were the dominant sources for these emissions. On Day 9, a secondary emissions peak occurred, with dung pats likely to be the main sources. This interpretation is based on simultaneous observations of the pH evolution in urine patches and dung pats created next to the circular plot. Feed and dung s les were analysed to estimate the amounts of nitrogen (N) ingested and excreted. Total N volatilised as NH3 was 19.8 (± 0.9)% of N intake and 22.4 (± 1.3)% of N excreted. The bimodal shape of the emissions time series allowed to infer separate estimates for volatilisation from urine and dung, respectively, with the result that urine accounted for 88.6 (± 2.6)% of the total NH3 emissions. The emissions from urine represented 25.5 (± 2.0)% of the excreted urine-N, while the emissions from dung amounted to 11.6 (± 2.7)% of the deposited dung-N. Emissions from dung may have continued after Day 13 but were not resolved by the measurement technique. A simple resistance model shows that the magnitude of the emissions from dung is controlled by the resistance of the dung crust.
Publisher: CSIRO Publishing
Date: 2005
DOI: 10.1071/SR04014
Abstract: The importance of bogs in the catchment hydrology of the Australian Alps has been long recognised but little studied. Damaged bogs are thought to be the source of dried peats now common throughout the Alps. We described the characteristics of a bog peat and a dried peat, to better understand the relationship between the two. Standard chemical properties of peat were measured: pH, loss on ignition, gravimetric contents of carbon and nitrogen, and electrical conductivity. We also measured the concentrations of total and plant-available elements, and the chemical composition of the organic carbon, leading to a measure of the extent of decomposition. The results suggest that this is a typical Sphagnum bog peat—low pH, high carbon content—and the distribution of carbon groups and other elements reflect the stable water source of this groundwater-fed Sphagnum bog. The properties of the dried peat were most similar to the catotelm (lower layer) of the bog peat. This resemblance, combined with decades of field observations, indicates that dried peat may form from the catotelm of bog peat, after the acrotelm (upper layer) dries and erodes. These results have implications for the management of Alps catchments, and further studies are needed to ascertain the hydrologic and carbon cycling roles of organic soils in the Australian Alps.
Publisher: Wiley
Date: 22-03-2022
DOI: 10.1111/GCB.16141
Abstract: In 2020, the Australian and New Zealand flux research and monitoring network, OzFlux, celebrated its 20 th anniversary by reflecting on the lessons learned through two decades of ecosystem studies on global change biology. OzFlux is a network not only for ecosystem researchers, but also for those ‘next users’ of the knowledge, information and data that such networks provide. Here, we focus on eight lessons across topics of climate change and variability, disturbance and resilience, drought and heat stress and synergies with remote sensing and modelling. In distilling the key lessons learned, we also identify where further research is needed to fill knowledge gaps and improve the utility and relevance of the outputs from OzFlux. Extreme climate variability across Australia and New Zealand (droughts and flooding rains) provides a natural laboratory for a global understanding of ecosystems in this time of accelerating climate change. As evidence of worsening global fire risk emerges, the natural ability of these ecosystems to recover from disturbances, such as fire and cyclones, provides lessons on adaptation and resilience to disturbance. Drought and heatwaves are common occurrences across large parts of the region and can tip an ecosystem's carbon budget from a net CO 2 sink to a net CO 2 source. Despite such responses to stress, ecosystems at OzFlux sites show their resilience to climate variability by rapidly pivoting back to a strong carbon sink upon the return of favourable conditions. Located in under‐represented areas, OzFlux data have the potential for reducing uncertainties in global remote sensing products, and these data provide several opportunities to develop new theories and improve our ecosystem models. The accumulated impacts of these lessons over the last 20 years highlights the value of long‐term flux observations for natural and managed systems. A future vision for OzFlux includes ongoing and newly developed synergies with ecophysiologists, ecologists, geologists, remote sensors and modellers.
Publisher: Elsevier BV
Date: 06-2021
Publisher: Wiley
Date: 09-09-2014
DOI: 10.1111/GCB.12686
Abstract: Savanna ecosystems comprise 22% of the global terrestrial surface and 25% of Australia (almost 1.9 million km 2 ) and provide significant ecosystem services through carbon and water cycles and the maintenance of bio ersity. The current structure, composition and distribution of Australian savannas have coevolved with fire, yet remain driven by the dynamic constraints of their bioclimatic niche. Fire in Australian savannas influences both the biophysical and biogeochemical processes at multiple scales from leaf to landscape. Here, we present the latest emission estimates from Australian savanna biomass burning and their contribution to global greenhouse gas budgets. We then review our understanding of the impacts of fire on ecosystem function and local surface water and heat balances, which in turn influence regional climate. We show how savanna fires are coupled to the global climate through the carbon cycle and fire regimes. We present new research that climate change is likely to alter the structure and function of savannas through shifts in moisture availability and increases in atmospheric carbon dioxide, in turn altering fire regimes with further feedbacks to climate. We explore opportunities to reduce net greenhouse gas emissions from savanna ecosystems through changes in savanna fire management.
Publisher: CSIRO Publishing
Date: 2009
DOI: 10.1071/CP08372
Abstract: In the south of the Tibet Autonomous Region of China there is a network of valleys where intensive agriculture is practiced. Although considered highly productive by Tibetans, farm incomes in the region are low, leading to a range of government initiatives to boost grain and fodder production. However, there is limited information available on current farming practices, yields, and likely yield constraints. The present paper uses available data and farmer interviews to describe the agro-climate and current systems of crop and livestock production, and considers possible strategies to boost production. Although winters in Tibet are cold and dry, summer and autumn provide ideal conditions for crop growth. Cropping systems are characterised by heavy tillage, frequent irrigation, high seeding rates and fertiliser applications, some use of herbicides, and little stubble retention or mechanisation. Spring barley and winter wheat are the predominant crops, followed by rapeseed, winter barley, and minor fodder and vegetable crops. Average yields for the main grain crops are around 4.0 t/ha for spring barley and 4.5 t/ha for winter wheat, significantly lower than should be possible in the environment. Farmers typically keep five or six cattle tethered near the household. Cattle are fed diets based on crop residues but are generally malnourished and rarely produce beyond the needs of the family. It is suggested that research and extension in the areas of crop nutrition, weed control, irrigation, seeding technology, and crop varieties should enable significant increases in grain yield. Increases in cattle production will require increases in the supply of good quality fodder. Cereal/fodder intercrops or double crops sown using no-till seed drills might enable the production of useful amounts of fodder in many areas without jeopardising food grain supply, and allow more crop residues to be retained in fields for improved soil health.
Publisher: Elsevier BV
Date: 12-2014
Publisher: Elsevier BV
Date: 12-2023
Publisher: Springer Science and Business Media LLC
Date: 23-06-2011
Publisher: Elsevier BV
Date: 06-2020
Publisher: Elsevier BV
Date: 11-2011
Publisher: Elsevier BV
Date: 03-2019
DOI: 10.1016/J.SCITOTENV.2019.134420
Abstract: Managed turf is a potential net source of greenhouse gas (GHG) emissions. While most studies to date have focused on non-sports turf, sports turf may pose an even greater risk of high GHG emissions due to the generally more intensive fertiliser, irrigation and mowing regimes. This study used manual and automated chambers to measure nitrous oxide (N
Publisher: Wiley
Date: 29-10-2021
DOI: 10.1111/AEC.13115
Publisher: Elsevier BV
Date: 02-2022
Publisher: Wiley
Date: 21-02-2012
Publisher: Elsevier BV
Date: 03-2020
DOI: 10.1016/J.SCITOTENV.2019.134488
Abstract: As the agricultural sector seeks to feed a growing global population, climate-smart agriculture offers opportunities to concurrently mitigate climate change by reducing greenhouse gas emissions and/or increasing carbon storage in soils. This study examined the potential for clay addition to reduce CO
Publisher: Springer Science and Business Media LLC
Date: 30-04-2011
Start Date: 06-2021
End Date: 06-2024
Amount: $380,260.00
Funder: Australian Research Council
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