ORCID Profile
0000-0003-1082-6896
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Publisher: Springer Science and Business Media LLC
Date: 17-10-2019
DOI: 10.1186/S13068-019-1588-3
Abstract: Lignocellulosic biomass is recognized as a promising renewable feedstock for the production of biofuels. However, current methods for converting biomass into fermentable sugars are considered too expensive and inefficient due to the recalcitrance of the secondary cell wall. Biomass composition can be modified to create varieties that are efficiently broken down to release cell wall sugars. This study focused on identifying the key biomass components influencing plant cell wall recalcitrance that can be targeted for selection in sugarcane, an important and abundant source of biomass. Biomass composition and the amount of glucan converted into glucose after saccharification were measured in leaf and culm tissues from seven sugarcane genotypes varying in fiber composition after no pretreatment and dilute acid, hydrothermal and ionic liquid pretreatments. In extractives-free sugarcane leaf and culm tissue, glucan, xylan, acid-insoluble lignin (AIL) and acid-soluble lignin (ASL) ranged from 20 to 32%, 15% to 21%, 14% to 20% and 2% to 4%, respectively. The ratio of syringyl (S) to guaiacyl (G) content in the lignin ranged from 1.5 to 2.2 in the culm and from 0.65 to 1.1 in the leaf. Hydrothermal and dilute acid pretreatments predominantly reduced xylan content, while the ionic liquid (IL) pretreatment targeted AIL reduction. The amount of glucan converted into glucose after 26 h of pre-saccharification was highest after IL pretreatment (42% in culm and 63.5% in leaf) compared to the other pretreatments. Additionally, glucan conversion in leaf tissues was approximately 1.5-fold of that in culm tissues. Percent glucan conversion varied between genotypes but there was no genotype that was superior to all others across the pretreatment groups. Path analysis revealed that S/G ratio, AIL and xylan had the strongest negative associations with percent glucan conversion, while ASL and glucan content had strong positive influences. To improve saccharification efficiency of lignocellulosic biomass, breeders should focus on reducing S/G ratio, xylan and AIL content and increasing ASL and glucan content. This will be key for the development of sugarcane varieties for bioenergy uses.
Publisher: Elsevier BV
Date: 03-2018
Publisher: Springer Science and Business Media LLC
Date: 02-08-2018
DOI: 10.1038/S41598-018-30033-4
Abstract: Sugarcane ( Saccharum spp. hybrids) is a potential lignocellulosic feedstock for biofuel production due to its exceptional biomass accumulation ability, high convertible carbohydrate content and a favorable energy input/output ratio. Genetic modification of biofuel traits to improve biomass conversion requires an understanding of the regulation of carbohydrate and lignin biosynthesis. RNA-Seq was used to investigate the transcripts differentially expressed between the immature and mature tissues of the sugarcane genotypes varying in fiber content. Most of the differentially expressed transcripts were found to be down-regulated during stem maturation, highlighting their roles in active secondary cell-wall development in the younger tissues of both high and low fiber genotypes. Several cellulose synthase genes (including CesA2, CesA4, CesA7 and COBRA-like protein), lignin biosynthesis-related genes (ρ-coumarate 3-hydroxylase, ferulate 5-hydroxylase, cinnamyl alcohol dehydrogenase and gentiobiase) and transcription regulators for the secondary cell-wall synthesis (including LIM, MYB, PLATZ, IAA24, C2H2 and C2C2 DOF zinc finger gene families) were exclusively differentially expressed between immature and mature tissues of high fiber genotypes. These findings reveal target genes for subsequent research on the regulation of cellulose and lignin metabolism.
Publisher: Frontiers Media SA
Date: 17-11-2015
Publisher: Wiley
Date: 2018
Abstract: Harnessing plant microbiota can assist in sustainably increasing primary productivity to meet growing global demands for food and biofuel. However, development of rational microbiome‐based approaches for improving crop yield and productivity is currently hindered by a lack of understanding of the major biotic and abiotic factors shaping the crop microbiome under relevant field conditions. We examined bacterial and fungal communities associated with both aerial (leaves, stalks) and belowground (roots, soil) compartments of four commercial sugarcane varieties ( Saccharum spp.) grown in several growing regions in Australia. We identified drivers of the sugarcane microbiome under field conditions and evaluated whether the plants shared a core microbiome. Sugarcane‐associated microbial assemblages were primarily determined by plant compartment, followed by growing region, crop age, variety and Yellow Canopy Syndrome (YCS). We detected a core set of microbiota and identified members of the core microbiome that were influenced by YCS incidence. Our study revealed key hub microorganisms in the core microbiome networks of sugarcane leaves, stalks, roots and rhizosphere soil despite location and time‐associated shifts in the community assemblages. Elucidating their functional roles and identification of the keystone core microbiota that sustain plant health could provide a technological breakthrough for a sustainable increase in crop productivity.
Publisher: Springer Science and Business Media LLC
Date: 25-09-2017
Publisher: Cold Spring Harbor Laboratory
Date: 23-12-2022
Abstract: Polyploidy is widespread in plants, allowing the different copies of genes to be expressed differently in a tissue-specific or developmentally specific way. This allele-specific expression (ASE) has been widely reported, but the proportion and nature of genes showing this characteristic have not been well defined. We now report an analysis of the frequency and patterns of ASE at the whole-genome level in the highly polyploid sugarcane genome. Very high depth whole-genome sequencing and RNA sequencing revealed strong correlations between allelic proportions in the genome and in expressed sequences. This level of sequencing allowed discrimination of each of the possible allele doses in this 12-ploid genome. Most genes were expressed in direct proportion to the frequency of the allele in the genome with ex les of polymorphisms being found with every possible discrete level of dose from 1:11 for single-copy alleles to 12:0 for monomorphic sites. The rarer cases of ASE were more frequent in the expression of defense-response genes, as well as in some processes related to the biosynthesis of cell walls. ASE was more common in genes with variants that resulted in significant disruption of function. The low level of ASE may reflect the recent origin of polyploid hybrid sugarcane. Much of the ASE present can be attributed to strong selection for resistance to diseases in both nature and domestication.
Publisher: Oxford University Press (OUP)
Date: 21-02-2005
DOI: 10.1093/JXB/ERI105
Publisher: Frontiers Media SA
Date: 23-07-2019
Publisher: Springer Science and Business Media LLC
Date: 22-05-2017
Publisher: Wiley
Date: 11-2020
DOI: 10.1002/PLD3.276
Publisher: Springer Science and Business Media LLC
Date: 13-06-2019
Publisher: Springer Science and Business Media LLC
Date: 18-03-2021
Publisher: CRC Press
Date: 15-08-2010
Publisher: Springer Science and Business Media LLC
Date: 30-11-2017
Publisher: Public Library of Science (PLoS)
Date: 17-08-2017
Publisher: Springer Science and Business Media LLC
Date: 25-04-2019
Publisher: Springer Science and Business Media LLC
Date: 25-11-2017
Publisher: CSIRO Publishing
Date: 2016
DOI: 10.1071/FP15335
Abstract: Photosynthesis, stomatal conductance, electron transport, internal CO2 and sugar levels were determined in the leaves of Yellow Canopy Syndrome (YCS) symptomatic sugarcane (Saccharum spp.) plants. Two varieties from two different geographic regions in Australia, KQ228 and Q200 were used. Although visual yellowing was only evident in the lower leaves of the canopy (older than Leaf 5), photosynthesis and stomatal conductance were lower in both the yellowing leaves and those not yet showing any visible symptoms. On a canopy basis, photosynthesis was reduced by 14% and 36% in YCS symptomatic KQ228 and Q200 plants, respectively. Sucrose levels increased significantly in the leaves, reflecting some of the earliest changes induced in YCS symptomatic plants. The electron transport characteristics of dark-adapted leaves showed disruptions on both the electron acceptor and donor side of PSII. Some of these changes are characteristic of a degree of disruption to the protein structure associated with the electron transport chain. Based on the results, we propose that the first change in metabolism in the YCS symptomatic plants was an increase in sucrose in the leaves and that all the other changes are secondary effects modulated by the increased sugar levels.
Publisher: Springer Science and Business Media LLC
Date: 12-2020
DOI: 10.1186/S13068-020-01837-2
Abstract: The composition of biomass determines its suitability for different applications within a biorefinery system. The proportion of the major biomass fractions (sugar, cellulose, hemicellulose and lignin) may vary in different sugarcane genotypes and growth environments and different parts of the plant. This study investigated the composition of mature and immature internodes, roots and mature leaves of sugarcane. Internodes were found to have a significantly larger alcohol-soluble component than leaves and roots. The primary difference between the immature and mature internodes was the ratio of soluble sugars. In mature tissues, sucrose content was significantly higher, whereas in immature internodal tissues there was lower sucrose and heightened concentrations of reducing sugars. Carbon (C) partitioning in leaf tissues was characterised by low levels of soluble components and high “other” and cell wall fractions. Root tissue had low ratios of soluble fractions relative to their cell wall contents, indicating a lack of storage of soluble carbon. There was no significant difference in the ratio of the major cell wall fractions between the major organ types. Characterisation of in idual non-cellulosic monomers indicated leaf and root tissues had significantly higher arabinose and galactose fractions. Significantly larger proportions of syringyl lignin compounds and the hydroxycinnamic compound, p- coumaric acid were observed in mature internodal tissues compared to the other tissue types. Tissue-specific differences in composition were shown to greatly affect the recalcitrance of the cell wall to enzymatic saccharification. Overall, this study displayed clear evidence of the differential partitioning of C throughout the sugarcane plant in specific organs. These organ-specific differences have major implications in their utility as a bioproduct feedstock. For ex le, the inclusion of trash (leaves) with the culms (internodes) may alter processing efficiency.
Publisher: Springer Science and Business Media LLC
Date: 14-11-2000
Publisher: Elsevier BV
Date: 2021
No related grants have been discovered for Frederik C Botha.