ORCID Profile
0000-0003-2237-9106
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Plant Biology | Plant Physiology | Ecosystem Function | Forestry Management and Environment
Ecosystem Assessment and Management of Forest and Woodlands Environments |
Publisher: Springer Science and Business Media LLC
Date: 09-04-2021
DOI: 10.1038/S41467-021-22333-7
Abstract: Tree stems are an important and unconstrained source of methane, yet it is uncertain whether internal microbial controls (i.e. methanotrophy) within tree bark may reduce methane emissions. Here we demonstrate that unique microbial communities dominated by methane-oxidising bacteria (MOB) dwell within bark of Melaleuca quinquenervia , a common, invasive and globally distributed lowland species. In laboratory incubations, methane-inoculated M. quinquenervia bark mediated methane consumption (up to 96.3 µmol m −2 bark d −1 ) and reveal distinct isotopic δ 13 C-CH 4 enrichment characteristic of MOB. Molecular analysis indicates unique microbial communities reside within the bark, with MOB primarily from the genus Methylomonas comprising up to 25 % of the total microbial community. Methanotroph abundance was linearly correlated to methane uptake rates (R 2 = 0.76, p = 0.006). Finally, field-based methane oxidation inhibition experiments demonstrate that bark-dwelling MOB reduce methane emissions by 36 ± 5 %. These multiple complementary lines of evidence indicate that bark-dwelling MOB represent a potentially significant methane sink, and an important frontier for further research.
Publisher: Proceedings of the National Academy of Sciences
Date: 26-11-2018
Abstract: Termites are important decomposers of plant material in tropical ecosystems, and thereby produce globally significant amounts of the greenhouse gas CH 4 . Here, we provide a mechanistic understanding of CH 4 turnover in termite mounds to fill a long-standing knowledge gap. Using field measurements, we show that termite mounds oxidize, on average, half of the CH 4 produced by termites before emission. This “hidden” biofilter mechanism is mediated by methanotrophic bacteria living in the mound walls or the soil beneath, for which internal termite-mound structures can facilitate CH 4 transport. Process links within the mound stabilize the filter efficiency. Moreover, we estimate undisturbed termite biomass via CH 4 emissions. This knowledge is crucial to reduce uncertainty in global termite-derived CH 4 emissions.
Publisher: Copernicus GmbH
Date: 21-09-2020
DOI: 10.5194/BG-2020-282
Abstract: Abstract. Atmospheric trace gases such as dihydrogen (H2), carbon monoxide (CO) and methane (CH4) play important roles in microbial metabolism and biogeochemical cycles. Analysis of these gases at trace levels requires reliable storage of discrete s les of low volume. While commercial s ling vials such as Exetainers® have been tested for CH4 and other greenhouse gases, no information on reliable storage is available for H2 and CO. We show that vials sealed with butyl rubber stoppers are not suitable for storing H2 and CO due to release of these gases from rubber material. Treating butyl septa with NaOH reduced trace gas release, but contamination was still substantial, with H2 and CO concentrations in air s les increasing by a factor of 3 and 10 after 30 days of storage in conventional 12 mL Exetainers. Among the rubber materials tested, silicone showed the lowest potential for H2 and CO release. We thus propose to modify Exetainers by closing them with a silicone plug, and sealing them with a stainless steel bolt and O-ring for long-term storage. Such modified Exetainers exhibited stable concentrations of H2 and CH4 exceeding 60 days of storage at atmospheric and elevated (10 ppm) concentrations. The increase of CO was still measurable, but nine times lower than in conventional Exetainers with treated septa, and can be corrected for due to its linearity by storing a standard gas alongside the s les. The proposed modification is inexpensive, scalable and robust, and thus enables reliable storage of large numbers of low-volume gas s les from remote field locations.
Publisher: Proceedings of the National Academy of Sciences
Date: 20-07-2021
Abstract: Termites are textbook ex les of the “extended phenotype” given their ability to construct complex mounds and regulate environments. Here, we show that termites also control microbial composition and biogeochemical cycling in their mounds through their emissions of hydrogen. These emissions drive remarkable enrichments of mound bacteria that use hydrogen to drive aerobic respiration and sometimes carbon fixation (i.e., lithoautotrophs). Such mound communities efficiently consume all termite-produced hydrogen and even mediate atmospheric uptake, while termite-produced methane escapes to the atmosphere. This provides further evidence that hydrogen is a major substrate for aerobic bacteria and that the terrestrial hydrogen sink is highly responsive to elevated emissions.
Publisher: Proceedings of the National Academy of Sciences
Date: 03-11-2021
Abstract: Diverse microbial life has been detected in the cold desert soils of Antarctica once thought to be barren. Here, we provide metagenomic, biogeochemical, and culture-based evidence that Antarctic soil microorganisms are phylogenetically and functionally distinct from those in other soils and adopt various metabolic and ecological strategies. The most abundant community members are metabolically versatile aerobes that use ubiquitous atmospheric trace gases to potentially meet energy, carbon, and, through metabolic water production, hydration needs. Lineages capable of harvesting solar energy, oxidizing edaphic inorganic substrates, or adopting symbiotic lifestyles were also identified. Altogether, these findings provide insights into microbial adaptation to extreme water and energy limitation and will inform ongoing efforts to conserve the unique bio ersity on this continent.
Publisher: Springer Science and Business Media LLC
Date: 04-01-2021
DOI: 10.1038/S41564-020-00811-W
Abstract: Soil microorganisms globally are thought to be sustained primarily by organic carbon sources. Certain bacteria also consume inorganic energy sources such as trace gases, but they are presumed to be rare community members, except within some oligotrophic soils. Here we combined metagenomic, biogeochemical and modelling approaches to determine how soil microbial communities meet energy and carbon needs. Analysis of 40 metagenomes and 757 derived genomes indicated that over 70% of soil bacterial taxa encode enzymes to consume inorganic energy sources. Bacteria from 19 phyla encoded enzymes to use the trace gases hydrogen and carbon monoxide as supplemental electron donors for aerobic respiration. In addition, we identified a fourth phylum (Gemmatimonadota) potentially capable of aerobic methanotrophy. Consistent with the metagenomic profiling, communities within soil profiles from erse habitats rapidly oxidized hydrogen, carbon monoxide and to a lesser extent methane below atmospheric concentrations. Thermodynamic modelling indicated that the power generated by oxidation of these three gases is sufficient to meet the maintenance needs of the bacterial cells capable of consuming them. Diverse bacteria also encode enzymes to use trace gases as electron donors to support carbon fixation. Altogether, these findings indicate that trace gas oxidation confers a major selective advantage in soil ecosystems, where availability of preferred organic substrates limits microbial growth. The observation that inorganic energy sources may sustain most soil bacteria also has broad implications for understanding atmospheric chemistry and microbial bio ersity in a changing world.
Publisher: Research Square Platform LLC
Date: 03-12-2020
DOI: 10.21203/RS.3.RS-119818/V1
Abstract: Tree stems are an important and unconstrained source of methane, yet it is uncertain if there are internal microbial controls (i.e. methanotrophy) within tree bark, that may reduce methane emissions. Using multiple lines of evidence, we demonstrate here that unique microbial communities dominated by methane oxidising bacteria (MOB) dwell within bark of Melaleuca quinquenervia , a common, invasive and globally distributed lowland species. Laboratory incubations of methane inoculated M. quinquenervia bark reveal methane consumption (up to 96.3 µmol m -2 bark d -1 ) and distinct isotopic δ 13 C-CH 4 enrichment characteristic of MOB. Molecular analysis indicates unique microbial communities reside within the bark, with methane-oxidising bacteria primarily from the genus Methylomonas comprising up to 25 % of the total microbial community. Methanotroph abundance was linearly correlated to methane uptake rates (R 2 = 0.76, p = 0.006). Finally, field-based methane oxidation inhibition experiments demonstrate that bark-dwelling MOB reduce methane emissions by 36 ± 5 %. These multiple, complementary lines of evidence indicate that bark-dwelling MOB represent a novel and potentially significant methane sink, and an important frontier for further research.
Publisher: Copernicus GmbH
Date: 29-01-2021
Abstract: Abstract. Atmospheric trace gases such as dihydrogen (H2), carbon monoxide (CO) and methane (CH4) play important roles in microbial metabolism and biogeochemical cycles. Analysis of these gases at trace levels requires reliable storage of discrete s les of low volume. While commercial s ling vials such as Exetainers® have been tested for CH4 and other greenhouse gases, no information on reliable storage is available for H2 and CO. We show that vials sealed with butyl rubber stoppers are not suitable for storing H2 and CO due to release of these gases from rubber material. Treating butyl septa with NaOH reduced trace-gas release, but contamination was still substantial, with H2 and CO mixing ratios in air s les increasing by a factor of 3 and 10 after 30 d of storage in conventional 12 mL Exetainers. All tested materials showed a near-linear increase in H2 and CO mixing ratios, indicating a zero-order reaction and material degradation as the underlying cause. Among the rubber materials tested, silicone showed the lowest potential for H2 and CO release. We thus propose modifying Exetainers by closing them with a silicone plug to minimise contamination and sealing them with a stainless-steel bolt and O-ring as a secondary diffusion barrier for long-term storage. Such modified Exetainers exhibited stable mixing ratios of H2 and CH4 exceeding 60 d of storage at atmospheric and elevated (10 ppm) mixing ratios. The increase of CO was still measurable but was 9 times lower than in conventional Exetainers with treated septa this can be corrected for due to its linearity by storing a standard gas alongside the s les. The proposed modification is inexpensive, scalable and robust, and thus it enables reliable storage of large numbers of low-volume gas s les from remote field locations.
Publisher: Springer Science and Business Media LLC
Date: 06-02-2023
DOI: 10.1038/S41564-023-01322-0
Abstract: Molecular hydrogen (H 2 ) is an abundant and readily accessible energy source in marine systems, but it remains unknown whether marine microbial communities consume this gas. Here we use a suite of approaches to show that marine bacteria consume H 2 to support growth. Genes for H 2 -uptake hydrogenases are prevalent in global ocean metagenomes, highly expressed in metatranscriptomes and found across eight bacterial phyla. Capacity for H 2 oxidation increases with depth and decreases with oxygen concentration, suggesting that H 2 is important in environments with low primary production. Biogeochemical measurements of tropical, temperate and subantarctic waters, and axenic cultures show that marine microbes consume H 2 supplied at environmentally relevant concentrations, yielding enough cell-specific power to support growth in bacteria with low energy requirements. Conversely, our results indicate that oxidation of carbon monoxide (CO) primarily supports survival. Altogether, H 2 is a notable energy source for marine bacteria and may influence oceanic ecology and biogeochemistry.
Publisher: Elsevier BV
Date: 02-2018
Publisher: Copernicus GmbH
Date: 20-06-2018
Abstract: Abstract. Termite mounds (TMs) mediate biogeochemical processes with global relevance, such as turnover of the important greenhouse gas methane (CH4). However, the complex internal and external morphology of TMs impede an accurate quantitative description. Here we present two novel field methods, photogrammetry (PG) and cross-sectional image analysis, to quantify TM external and internal mound structure of 29 TMs of three termite species. Photogrammetry was used to measure epigeal volume (VE), surface area (AE) and mound basal area (AB) by reconstructing 3-D models from digital photographs, and compared against a water-displacement method and the conventional approach of approximating TMs by simple geometric shapes. To describe TM internal structure, we introduce TM macro- and micro-porosity (θM and θμ), the volume fractions of macroscopic chambers, and microscopic pores in the wall material, respectively. Macro-porosity was estimated using image analysis of single TM cross sections, and compared against full X-ray computer tomography (CT) scans of 17 TMs. For these TMs we present complete pore fractions to assess species-specific differences in internal structure. The PG method yielded VE nearly identical to a water-displacement method, while approximation of TMs by simple geometric shapes led to errors of 4–200 %. Likewise, using PG substantially improved the accuracy of CH4 emission estimates by 10–50 %. Comprehensive CT scanning revealed that investigated TMs have species-specific ranges of θM and θμ, but similar total porosity. Image analysis of single TM cross sections produced good estimates of θM for species with thick walls and evenly distributed chambers. The new image-based methods allow rapid and accurate quantitative characterisation of TMs to answer ecological, physiological and biogeochemical questions. The PG method should be applied when measuring greenhouse-gas emissions from TMs to avoid large errors from inadequate shape approximations.
Publisher: Copernicus GmbH
Date: 21-09-2020
No related organisations have been discovered for Philipp Nauer.
Start Date: 06-2021
End Date: 06-2024
Amount: $364,850.00
Funder: Australian Research Council
View Funded Activity