ORCID Profile
0000-0001-7717-4330
Current Organisations
University of Aberdeen
,
Owlstone Medical Ltd
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Publisher: Springer Science and Business Media LLC
Date: 12-2008
DOI: 10.1038/NATURE07632
Publisher: F1000 Research Ltd
Date: 03-02-2020
DOI: 10.12688/WELLCOMEOPENRES.15679.1
Abstract: We present a genome assembly from an in idual male Sciurus vulgaris (the Eurasian red squirrel Vertebrata Mammalia Eutheria Rodentia Sciuridae). The genome sequence is 2.88 gigabases in span. The majority of the assembly is scaffolded into 21 chromosomal-level scaffolds, with both X and Y sex chromosomes assembled.
Publisher: Public Library of Science (PLoS)
Date: 18-07-2011
Publisher: F1000 Research Ltd
Date: 14-05-2021
DOI: 10.12688/WELLCOMEOPENRES.16631.1
Abstract: We present a genome assembly from an in idual female Aquila chrysaetos chrysaetos (the European golden eagle Chordata Aves Accipitridae). The genome sequence is 1.23 gigabases in span. The majority of the assembly is scaffolded into 28 chromosomal pseudomolecules, including the W and Z sex chromosomes.
Publisher: Public Library of Science (PLoS)
Date: 29-02-2012
Publisher: Public Library of Science (PLoS)
Date: 04-01-2013
Publisher: Oxford University Press (OUP)
Date: 19-06-2014
Publisher: F1000 Research Ltd
Date: 19-02-2020
DOI: 10.12688/WELLCOMEOPENRES.15722.1
Abstract: We present a genome assembly from an in idual male Lutra lutra (the Eurasian river otter Vertebrata Mammalia Eutheria Carnivora Mustelidae). The genome sequence is 2.44 gigabases in span. The majority of the assembly is scaffolded into 20 chromosomal pseudomolecules, with both X and Y sex chromosomes assembled.
Publisher: F1000 Research Ltd
Date: 13-02-2020
DOI: 10.12688/WELLCOMEOPENRES.15721.1
Abstract: We present a genome assembly from an in idual male Sciurus carolinensis (the eastern grey squirrel Vertebrata Mammalia Eutheria Rodentia Sciuridae). The genome sequence is 2.82 gigabases in span. The majority of the assembly (92.3%) is scaffolded into 21 chromosomal-level scaffolds, with both X and Y sex chromosomes assembled.
Publisher: Springer Science and Business Media LLC
Date: 30-09-2015
DOI: 10.1038/NATURE15390
Publisher: Elsevier BV
Date: 10-2015
Publisher: F1000 Research Ltd
Date: 13-05-2021
DOI: 10.12688/WELLCOMEOPENRES.16838.1
Abstract: We present a genome assembly from an in idual female Salmo trutta (the brown trout Chordata Actinopteri Salmoniformes Salmonidae). The genome sequence is 2.37 gigabases in span. The majority of the assembly is scaffolded into 40 chromosomal pseudomolecules. Gene annotation of this assembly on Ensembl has identified 43,935 protein coding genes.
Publisher: Springer Science and Business Media LLC
Date: 27-06-2016
DOI: 10.1038/NG.3599
Publisher: Cold Spring Harbor Laboratory
Date: 09-01-2020
DOI: 10.1101/2020.01.08.887828
Abstract: The King Scallop, Pecten maximus , is distributed in shallow waters along the Atlantic coast of Europe. It forms the basis of a valuable commercial fishery and its ubiquity means that it plays a key role in coastal ecosystems and food webs. Like other filter feeding bivalves it can accumulate potent phytotoxins, to which it has evolved some immunity. The molecular origins of this immunity are of interest to evolutionary biologists, pharmaceutical companies and fisheries management. Here we report the genome sequencing of this species, conducted as part of the Wellcome Sanger 25 Genomes Project. This genome was assembled from PacBio reads and scaffolded with 10x Chromium and Hi-C data, and its 3,983 scaffolds have an N50 of 44.8 Mb (longest scaffold 60.1 Mb), with 92% of the assembly sequence contained in 19 scaffolds, corresponding to the 19 chromosomes found in this species. The total assembly spans 918.3 Mb, and is the best-scaffolded marine bivalve genome published to date, exhibiting 95.5% recovery of the metazoan BUSCO set. Gene annotation resulted in 67,741 gene models. Analysis of gene content revealed large numbers of gene duplicates, as previously seen in bivalves, with little gene loss, in comparison with the sequenced genomes of other marine bivalve species. The genome assembly of Pecten maximus and its annotated gene set provide a high-quality platform for a wide range of investigations, including studies on such disparate topics as shell biomineralization, pigmentation, vision and resistance to algal toxins. As a result of our findings we highlight the sodium channel gene Nav1 , known as a gene conferring resistance to saxitoxin and tetrodotoxin, as a candidate for further studies investigating immunity to domoic acid.
Publisher: Springer Science and Business Media LLC
Date: 28-04-2013
DOI: 10.1038/NG.2624
Publisher: Elsevier BV
Date: 08-2018
Location: United Kingdom of Great Britain and Northern Ireland
Location: United Kingdom of Great Britain and Northern Ireland
No related grants have been discovered for Daniel Mead.