ORCID Profile
0000-0002-3019-2678
Current Organisation
Sungkyunkwan University
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Publisher: The Korean Society of Phycology
Date: 15-06-2018
Publisher: Elsevier BV
Date: 08-2016
DOI: 10.1016/J.YMPEV.2016.05.018
Abstract: Although the Gelidiales are economically important marine red algae producing agar and agarose, the phylogeny of this order remains poorly resolved. The present study provides a molecular phylogeny based on a novel marker, nuclear-encoded CesA, plus plastid-encoded psaA, psbA, rbcL, and mitochondria-encoded cox1 from subsets of 107 species from all ten genera within the Gelidiales. Analyses of in idual and combined datasets support the monophyly of three currently recognized families, and reveal a new clade. On the basis of these results, the new family Orthogonacladiaceae is described to accommodate Aphanta and a new genus Orthogonacladia that includes species previously classified as Gelidium madagascariense and Pterocladia rectangularis. Acanthopeltis is merged with Gelidium, which has nomenclatural priority. Nuclear-encoded CesA was found to be useful for improving the resolution of phylogenetic relationships within the Gelidiales and is likely to be valuable for the inference of phylogenetic relationship among other red algal taxa.
Publisher: Oxford University Press (OUP)
Date: 23-04-2018
Abstract: Red algae (Rhodophyta) underwent two phases of large-scale genome reduction during their early evolution. The red seaweeds did not attain genome sizes or gene inventories typical of other multicellular eukaryotes. We generated a high-quality 92.1 Mb draft genome assembly from the red seaweed Gracilariopsis chorda, including methylation and small (s)RNA data. We analyzed these and other Archaeplastida genomes to address three questions: 1) What is the role of repeats and transposable elements (TEs) in explaining Rhodophyta genome size variation, 2) what is the history of genome duplication and gene family expansion/reduction in these taxa, and 3) is there evidence for TE suppression in red algae? We find that the number of predicted genes in red algae is relatively small (4,803-13,125 genes), particularly when compared with land plants, with no evidence of polyploidization. Genome size variation is primarily explained by TE expansion with the red seaweeds having the largest genomes. Long terminal repeat elements and DNA repeats are the major contributors to genome size growth. About 8.3% of the G. chorda genome undergoes cytosine methylation among gene bodies, promoters, and TEs, and 71.5% of TEs contain methylated-DNA with 57% of these regions associated with sRNAs. These latter results suggest a role for TE-associated sRNAs in RNA-dependent DNA methylation to facilitate silencing. We postulate that the evolution of genome size in red algae is the result of the combined action of TE spread and the concomitant emergence of its epigenetic suppression, together with other important factors such as changes in population size.
Publisher: Walter de Gruyter GmbH
Date: 17-07-2018
Abstract: Two species of the brown algal genus Rosenvingea are reported from south-west (SW) Australia, including the widely distributed R. orientalis and the new species R. australis Huisman, G.H. Boo et S.M. Boo, sp. nov. Molecular phylogenies of mitochondrial cox 3 and plastid psa A unequivocally align the SW Australian R. orientalis with specimens from Vietnam and the species is morphologically consistent throughout its Australian range. Australian specimens of the new species R. australis join with a specimen from New Caledonia and these resolve as a sister species to R. intricata , with levels of pairwise ergence (4.2–4.9% in cox 3 and 3.9–4.0% in psa A) comparable to those between other scytosiphonacean species. The new species can be distinguished morphologically by its branch dimensions and the arrangement and size of plurangia, but further studies including molecular analyses of a full range of species and possible morphological variants are needed.
Publisher: Elsevier BV
Date: 10-2014
Location: United States of America
No related grants have been discovered for Ga Hun Boo.