Testing metabolic theories in ecology. There are striking similarities in the way plants and animals take up and use energy (metabolism), despite enormous variation in size and life-style. This project will make the first experimental comparison of the predictions of the two major theories for these broad patterns. The results will significantly progress this controversial and exciting field.
A Universal Power Law for Growth and Diversity of Dinosaur and Bird Beaks. Universal rules that govern how animals grow have tremendous power to explain the highly complex processes of growth and development. The project investigators have recently discovered a new rule of growth that controls how teeth, horns, claws and beaks are generated in animals. This project aims to use this new rule to examine the evolution and diversity of beaks in birds and dinosaurs. By combining 3D modelling, biomech ....A Universal Power Law for Growth and Diversity of Dinosaur and Bird Beaks. Universal rules that govern how animals grow have tremendous power to explain the highly complex processes of growth and development. The project investigators have recently discovered a new rule of growth that controls how teeth, horns, claws and beaks are generated in animals. This project aims to use this new rule to examine the evolution and diversity of beaks in birds and dinosaurs. By combining 3D modelling, biomechanics and genetic analysis of bird beak development with the study of dinosaur fossils, this project expects to reveal the underlying processes controlling the growth and evolution of beaks. The anticipated goal of this project is to show the power of new theoretical models to explain the diversity of life.Read moreRead less
Skin in the game: biomimetics, fitness and the springtail cuticle. This project aims to examine the relationship between cuticle (skin) properties, water balance, and fitness in springtails, key players in soil systems. Springtail cuticles are diverse, responsive, and extremely resistant to wetting by water, alcohol and other substances. Their Australian diversity has not been well explored for biomimetic new materials. This project expects to explore options for new applications in materials sc ....Skin in the game: biomimetics, fitness and the springtail cuticle. This project aims to examine the relationship between cuticle (skin) properties, water balance, and fitness in springtails, key players in soil systems. Springtail cuticles are diverse, responsive, and extremely resistant to wetting by water, alcohol and other substances. Their Australian diversity has not been well explored for biomimetic new materials. This project expects to explore options for new applications in materials science and engineering by generalising the cuticle structure-function relationship. Expected outcomes are new information to harness for industry the diversity of nature’s self-cleaning, water repellent surfaces. Significant benefits lie in potential new biomimetic manufacturing options.Read moreRead less
Developing new tools for chemical biology. We will develop new synthetic strategies to support the development of small molecule chemical probes that bind with high affinity and specificity to a target protein. Such chemical probes are invaluable in elucidating the role of specific proteins in biological pathways. Our novel strategy aims to be rapid, efficient in its use of materials and widely applicable to a range of different protein targets. The core of our approach involves using biophysica ....Developing new tools for chemical biology. We will develop new synthetic strategies to support the development of small molecule chemical probes that bind with high affinity and specificity to a target protein. Such chemical probes are invaluable in elucidating the role of specific proteins in biological pathways. Our novel strategy aims to be rapid, efficient in its use of materials and widely applicable to a range of different protein targets. The core of our approach involves using biophysical binding assays to characterise compounds that are produced on small scale using parallel chemistry. This approach will enable better chemical probes to be developed more rapidly at lower cost than is currently possible.Read moreRead less
Brains frozen in time: vertebrate neural adaptations to invading land . The evolution of terrestrial animals from fish was one of the most significant events in our evolution, yet little is known about how the brain evolved during this transition. This project aims to investigate the major novelties acquired in the evolution of the early vertebrate brain in order to determine the functional reasons for such changes, as well as identifying the timing and environmental factors driving such changes ....Brains frozen in time: vertebrate neural adaptations to invading land . The evolution of terrestrial animals from fish was one of the most significant events in our evolution, yet little is known about how the brain evolved during this transition. This project aims to investigate the major novelties acquired in the evolution of the early vertebrate brain in order to determine the functional reasons for such changes, as well as identifying the timing and environmental factors driving such changes. This project expects to generate new knowledge on the anatomy of the vertebrate brain with improved methods for reconstructing fossil brains to better understand our own neurological evolution. Expected outcomes include enhanced institutional collaborations within Australia, and between Australia, Canada and the USA.Read moreRead less
BioPPSy: An open source BIOchemical Property Prediction SYstem. Computer software will be developed for the prediction of the pharmacokinetic properties of small molecules to assist in the development of new compounds with drug-like properties. The software will be made freely available to promote its use and further development.
Interrogating diarylquinoline toxicity with targeted organic synthesis. Bedaquiline is the only new first-line treatment with a new mechanism of action to treat TB in the last 40 years, approved by the FDA on 31 December 2012. Alarmingly, this compound, has significant toxicities. The hypothesis tested in this project is that decreasing lipophilicity and basicity in this class of compounds while retaining target affinity will decrease toxicity but retain anti-TB activity. The project aims to: sy ....Interrogating diarylquinoline toxicity with targeted organic synthesis. Bedaquiline is the only new first-line treatment with a new mechanism of action to treat TB in the last 40 years, approved by the FDA on 31 December 2012. Alarmingly, this compound, has significant toxicities. The hypothesis tested in this project is that decreasing lipophilicity and basicity in this class of compounds while retaining target affinity will decrease toxicity but retain anti-TB activity. The project aims to: synthesise novel heteroarylalkylamines distinct from bedaquiline and designed to be more polar, less basic, and metabolically more stable; and, test all successfully synthesised target compounds for mechanism-based anti-tuberculosis activity, hERG-mediated cardiotoxicity, metabolic instability, and phospholipidosis.Read moreRead less
Plastic brains: Neural adaptations to changing environments in reptiles. The project aims to quantify brain anatomy on an unprecedented scale in comparative neurobiology. Focusing on Australia’s diverse and extensive collection of reptiles, including goannas, dragons and venomous snakes, the project expects to generate new knowledge on the evolution of brains as these animals adapted to new habitats and climates. Data will be collected by cutting-edge micro-CT technology and advanced phylogeneti ....Plastic brains: Neural adaptations to changing environments in reptiles. The project aims to quantify brain anatomy on an unprecedented scale in comparative neurobiology. Focusing on Australia’s diverse and extensive collection of reptiles, including goannas, dragons and venomous snakes, the project expects to generate new knowledge on the evolution of brains as these animals adapted to new habitats and climates. Data will be collected by cutting-edge micro-CT technology and advanced phylogenetic techniques, which will be complemented by detailed neuroanatomy. Expected outcomes include enhanced understanding of the effects of temperature on brains, and a large database of 3D digital anatomical models. A major benefit includes a greater ability to mitigate the effects of environmental change.Read moreRead less
Chromatin barriers in Plasmodium falciparum gene regulation. Malaria is a major world disease that kills around 2 million people annually. The genome of the causative agent has now been completely sequenced, but we still know very little of how and why some genes are activated while their neighbours are turned off. I will study the DNA barriers that separate such genes, and the proteins that interact with these regions to better understand how genetic regulation functions in these parasites. A b ....Chromatin barriers in Plasmodium falciparum gene regulation. Malaria is a major world disease that kills around 2 million people annually. The genome of the causative agent has now been completely sequenced, but we still know very little of how and why some genes are activated while their neighbours are turned off. I will study the DNA barriers that separate such genes, and the proteins that interact with these regions to better understand how genetic regulation functions in these parasites. A better understanding of gene regulation in malaria parasites will help us to better combat the tricks utilised by this and other organisms to elude our immune systems.Read moreRead less
Statistical methods for detection of non-coding RNAs in eukaryote genomes. Understanding how eukaryotic cells work is a major goal of 21st century biology. A crucial step will be to catalogue the functional components of eukaryotic genomes. Australian researchers must be involved in this process at an early stage, in order to maximise commercial opportunities, attract quality researchers and position ourselves for further advances. This project will make major contributions to international effo ....Statistical methods for detection of non-coding RNAs in eukaryote genomes. Understanding how eukaryotic cells work is a major goal of 21st century biology. A crucial step will be to catalogue the functional components of eukaryotic genomes. Australian researchers must be involved in this process at an early stage, in order to maximise commercial opportunities, attract quality researchers and position ourselves for further advances. This project will make major contributions to international efforts in this area, via the development of statistical methods for segmenting genomes, classification of those segments, and study of the resulting classes. In the long term, enhanced understanding of eukaryotic cells will lead to breakthroughs in biology, and to medical, pharmaceutical, agricultural and scientific advances.Read moreRead less