Contribution of comammox bacteria to soil nitrification. This project aims to understand the diversity, activity and environmental relevance of comammox bacteria, the newly-discovered complete nitrifiers, in Australian soils, and to evaluate their relative contributions to nitrification processes compared to other canonical nitrifying prokaryotes. Nitrogen transformations are pivotal microbial processes, with nitrification largely responsible for nitrogen losses through nitrous oxide emissions a ....Contribution of comammox bacteria to soil nitrification. This project aims to understand the diversity, activity and environmental relevance of comammox bacteria, the newly-discovered complete nitrifiers, in Australian soils, and to evaluate their relative contributions to nitrification processes compared to other canonical nitrifying prokaryotes. Nitrogen transformations are pivotal microbial processes, with nitrification largely responsible for nitrogen losses through nitrous oxide emissions and nitrate leaching in the terrestrial ecosystems. The expected outcomes will develop new knowledge on the comammox bacteria and provide novel insights into refined strategies to manipulate nitrification processes for improved nitrogen use efficiency and sustainable agricultural management.Read moreRead less
Discovery Early Career Researcher Award - Grant ID: DE220101310
Funder
Australian Research Council
Funding Amount
$434,582.00
Summary
A unique and overlooked microbial process scavenging two greenhouse gases. This project aims to perform the first-ever systematic investigation of a novel microbial process, in which two potent gases (methane and nitric oxide) responsible for the climate change are metabolized simultaneously. This process is suggested to be universal in early and modern Earth's aquatic systems, which is a potential but overlooked microbial sink for methane and nitric oxide. By identifying the responsible organis ....A unique and overlooked microbial process scavenging two greenhouse gases. This project aims to perform the first-ever systematic investigation of a novel microbial process, in which two potent gases (methane and nitric oxide) responsible for the climate change are metabolized simultaneously. This process is suggested to be universal in early and modern Earth's aquatic systems, which is a potential but overlooked microbial sink for methane and nitric oxide. By identifying the responsible organisms and their metabolic pathway, this project represents a critical step towards a full understanding of their roles in affecting the greenhouse gas emission. This understanding will also enable us to more reliably predict the global climate change, which is one of the most significant challenges in the 21st Century.Read moreRead less
Carbon costs of plant nutrient and water uptake. This project aims to investigate how much carbon plants need to invest belowground in return for water and nutrients. By using economic principles of supply and demand the project will quantify carbon expenditure for water and nutrients in grasslands and crops under different climate and land management scenarios. This project will use triple and quadruple isotope labelling techniques and explore the dependency of carbon investment on plant-microb ....Carbon costs of plant nutrient and water uptake. This project aims to investigate how much carbon plants need to invest belowground in return for water and nutrients. By using economic principles of supply and demand the project will quantify carbon expenditure for water and nutrients in grasslands and crops under different climate and land management scenarios. This project will use triple and quadruple isotope labelling techniques and explore the dependency of carbon investment on plant-microbial interactions and availability of belowground resources. Expected outcomes include new knowledge to build a universal framework about plant carbon-water-nutrient economics. This will benefit global carbon cycling models and efforts to increase nutrient and water use efficiencies in agricultural crops.Read moreRead less
Unraveling the spread of antibiotic resistance genes across soil food webs. The emerging spread of antibiotic resistance genes (ARGs) in the environment is a major threat to public health and food security. This project aims to develop new knowledge about the key transmission routes of ARGs across multiple trophic levels in soil food webs, and how the interactions of plant, soil and fauna contribute to the profiles of environmental ARGs. Expected outcomes include an improved understanding of the ....Unraveling the spread of antibiotic resistance genes across soil food webs. The emerging spread of antibiotic resistance genes (ARGs) in the environment is a major threat to public health and food security. This project aims to develop new knowledge about the key transmission routes of ARGs across multiple trophic levels in soil food webs, and how the interactions of plant, soil and fauna contribute to the profiles of environmental ARGs. Expected outcomes include an improved understanding of the role of fauna in regulating ARGs in the soil environment and the spreading mechanisms of antibiotic resistance in soil food webs. This project will contribute to the development of evidence-based interventions to tackle environmental antibiotic resistance, which has benefits for the environment and public health.
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Breaking critical barriers in soil formation of bauxite residues . Conventional methods of bauxite residue rehabilitation require expensive and unsustainable covering topsoil. Building on recent breakthroughs in eco-engineering tailings into soil, the project aims to develop a field-based technology using marine microbes and halophytic plants to accelerate in-situ soil formation from bauxite residues (incl seawater neutralised bauxite residues) under field conditions. The technology will be unde ....Breaking critical barriers in soil formation of bauxite residues . Conventional methods of bauxite residue rehabilitation require expensive and unsustainable covering topsoil. Building on recent breakthroughs in eco-engineering tailings into soil, the project aims to develop a field-based technology using marine microbes and halophytic plants to accelerate in-situ soil formation from bauxite residues (incl seawater neutralised bauxite residues) under field conditions. The technology will be underpinned by understanding the roles of marine microbe consortia and eco-engineering inputs in accelerating key mineralogical, geochemical, physical and biological changes in bauxite residues. This technology is expected to be transferable and adaptable across other alumina refineries in Australia.Read moreRead less
Fine-scale resolution of genomes in natural microbial communities. This project aims to develop advanced molecular and statistical techniques to precisely resolve the genomes of microbes in the environment. Microbes inhabit every niche on the planet and are fundamental to human and animal health, agriculture, and the environment. The proposed technology will advance our understanding of environmental microbes, leading to advances in areas like climate science and biosecurity where microbes play ....Fine-scale resolution of genomes in natural microbial communities. This project aims to develop advanced molecular and statistical techniques to precisely resolve the genomes of microbes in the environment. Microbes inhabit every niche on the planet and are fundamental to human and animal health, agriculture, and the environment. The proposed technology will advance our understanding of environmental microbes, leading to advances in areas like climate science and biosecurity where microbes play a key role. It will also support the development of billion dollar industries focused on the use of beneficial microbes in agriculture, plant, animal, and human health.Read moreRead less
Do binding proteins allow cyanobacteria to scavenge diverse nutrients? Marine cyanobacteria are abundant primary producers that underlie the entire marine food web. They encode a diverse range of predicted nutrient uptake systems that are highly conserved, suggesting these transporters play critical roles in their success in diverse marine ecosystems. However, there is very limited data regarding their function, specificity and ecological importance. Using our pioneering combinatorial approach, ....Do binding proteins allow cyanobacteria to scavenge diverse nutrients? Marine cyanobacteria are abundant primary producers that underlie the entire marine food web. They encode a diverse range of predicted nutrient uptake systems that are highly conserved, suggesting these transporters play critical roles in their success in diverse marine ecosystems. However, there is very limited data regarding their function, specificity and ecological importance. Using our pioneering combinatorial approach, we will undertake systematic functional characterisation of these nutrient uptake systems and determine their physiological and ecological importance. Our integrative science will provide a molecules-to-ecosystems understanding of cyanobacterial nutrient acquisition.Read moreRead less
Accelerated tailings remediation with plant and microbial biotechnologies. The Australian alumina industry produces 32 million tonnes of bauxite residue (alumina refining tailings) each year, most of which is stored in perpetuity in landfill-type tailings storage facilities. The high pH, high salinity, lack of plant nutrients, and poor physical properties of bauxite residue are major barriers to safe storage and successful closure of tailings storage facilities. Existing remediation approaches a ....Accelerated tailings remediation with plant and microbial biotechnologies. The Australian alumina industry produces 32 million tonnes of bauxite residue (alumina refining tailings) each year, most of which is stored in perpetuity in landfill-type tailings storage facilities. The high pH, high salinity, lack of plant nutrients, and poor physical properties of bauxite residue are major barriers to safe storage and successful closure of tailings storage facilities. Existing remediation approaches are expensive, slow, and often ineffective. We will deliver new microbial- and plant-driven biotechnologies for rapid, cost-effective remediation of bauxite residue. This will enable safe, sustainable closure of storage facilities, and safeguard the strong contribution of this $15 billion industry to Australia's economy. Read moreRead less
Mitigating the risk of cyanobacterial blooms in wastewater ponds. Cyanobacterial blooms in wastewater treatment plants impact on effluent quality and the utility of recycled water, posing a significant risk to the economy, the environment and public health. To understand the causes of cyanobacterial blooms in pond-based wastewater treatment plants and the risk they pose, this project will use the latest molecular techniques to examine how the microbial communities within these systems interact w ....Mitigating the risk of cyanobacterial blooms in wastewater ponds. Cyanobacterial blooms in wastewater treatment plants impact on effluent quality and the utility of recycled water, posing a significant risk to the economy, the environment and public health. To understand the causes of cyanobacterial blooms in pond-based wastewater treatment plants and the risk they pose, this project will use the latest molecular techniques to examine how the microbial communities within these systems interact with each other and their surrounding environment to form blooms and produce toxins and other harmful metabolites. Such knowledge will inform risk assessment and provide strategies for the mitigation of future bloom events, improving the security of our increasingly valuable recycled water resources.Read moreRead less
Defining and engineering the rhizosphere for Australian rainfall patterns. The manner in which plants use carbon and water defines agricultural and natural landscapes. Today's models that predict plant improvement rely on carbon and water usage by plant leaves. However, the first interaction between plants, carbon and water occurs in the rhizosphere; a diverse zone with dynamic root-microbiome interactions. We will use advanced visualisation and mathematics to determine fine scale relationships ....Defining and engineering the rhizosphere for Australian rainfall patterns. The manner in which plants use carbon and water defines agricultural and natural landscapes. Today's models that predict plant improvement rely on carbon and water usage by plant leaves. However, the first interaction between plants, carbon and water occurs in the rhizosphere; a diverse zone with dynamic root-microbiome interactions. We will use advanced visualisation and mathematics to determine fine scale relationships between microbes and roots in the rhizosphere when exposed to water levels reflective of current and projected rainfall values. From generated knowledge of water and carbon dynamics caused by intimate microbe-root interactions, we will provide water saving, soil regeneration and improved carbon biosequestration strategies.Read moreRead less