Sequencing and assembling microbial community metagenomes in real-time. This project aims to assemble metagenomes directly from environmental samples using nanopore sequencing. Short-read approaches to metagenomics cannot assemble mixed genomes from an environmental sample, so focus on describing which species and genes are present. Long-read nanopore sequencing enables the assembly of full genomes of multiple species in a sample. Assembling complete genomes in important resources such as water ....Sequencing and assembling microbial community metagenomes in real-time. This project aims to assemble metagenomes directly from environmental samples using nanopore sequencing. Short-read approaches to metagenomics cannot assemble mixed genomes from an environmental sample, so focus on describing which species and genes are present. Long-read nanopore sequencing enables the assembly of full genomes of multiple species in a sample. Assembling complete genomes in important resources such as water and soil should lead to deeper understanding of the dynamics, variation and transfer of genetic material within these resources’ microbial communities, strategies to manage microbial diversity, and improved productivity and long-term sustainability for these resources.Read moreRead less
New Bayesian methodology for understanding complex systems using hidden Markov models and expert opinion, environmental, robotics and genomics applications. This project aims to merge four areas of intense international interest in describing complex systems: hidden Markov models and mixtures, semi-parametric and nonparametric approaches, true combination of expert opinion with data, and new Bayesian computational methods based on perfect sampling and particle sampling. The project will signific ....New Bayesian methodology for understanding complex systems using hidden Markov models and expert opinion, environmental, robotics and genomics applications. This project aims to merge four areas of intense international interest in describing complex systems: hidden Markov models and mixtures, semi-parametric and nonparametric approaches, true combination of expert opinion with data, and new Bayesian computational methods based on perfect sampling and particle sampling. The project will significantly contribute to statistical methodology and its ability to inform about real-world problems. A strong focus on applications to genomics, robotics and environmental modelling will bring immediate research and monetary benefit for industry. Expected outcomes include enhanced cross-disciplinary and international linkages, publications, industry-funded projects and highly trained graduates.Read moreRead less
Passive biofiltration processes for nitrogen removal from polluted waters. Traditional urban wastewater treatment is energy and resource demanding. By combining principles of Water Sensitive Urban Design (WSUD) with advanced pollutant removal processes, we will create necessary knowledge to underpin development of novel sustainable urban water treatment systems. This project aims to understand and utilise Simultaneous Nitrification, Anammox and Denitrification (SNAD) processes within passive pla ....Passive biofiltration processes for nitrogen removal from polluted waters. Traditional urban wastewater treatment is energy and resource demanding. By combining principles of Water Sensitive Urban Design (WSUD) with advanced pollutant removal processes, we will create necessary knowledge to underpin development of novel sustainable urban water treatment systems. This project aims to understand and utilise Simultaneous Nitrification, Anammox and Denitrification (SNAD) processes within passive plant-soil-based biofilters for cost-effective removal of nitrogen from a range of polluted urban water sources. The project will open a potential for a new technological advancements in urban water management, while simultaneously providing benefits to the environment and community through greening and waterway protection.Read moreRead less
The effect of wastewater treatment on the ecotoxicity of chiral chemicals. This project aims to assess the environmental implications of pharmaceuticals discharged in effluents from wastewater treatment plants. Trace levels of human pharmaceuticals occur in sewage and urban waterways, but during sewage treatment, some pharmaceuticals can undergo a chemical transformation known as 'chiral inversion'. In some cases, this may convert relatively benign environmental contaminants to more ecologically ....The effect of wastewater treatment on the ecotoxicity of chiral chemicals. This project aims to assess the environmental implications of pharmaceuticals discharged in effluents from wastewater treatment plants. Trace levels of human pharmaceuticals occur in sewage and urban waterways, but during sewage treatment, some pharmaceuticals can undergo a chemical transformation known as 'chiral inversion'. In some cases, this may convert relatively benign environmental contaminants to more ecologically toxic species. This project will investigate why and how some pharmaceuticals become susceptible to chiral inversion and assess ecotoxicological differences. This work is expected to determine the significance of considering chiral inversion in environmental risk assessment, with applications to a broader range of chemicals including pesticides and industrial chemicals.Read moreRead less
Urban flood modelling at speed and scale. Frequent floods in urban areas cause damages comparable to extreme floods. This is likely to intensify with future urbanisation and climate change. Although Water Sensitive Urban Design (WSUD) offers sustainable urban drainage solutions, there are no models that can select an optimal WSUD system to deliver on a set urban flood mitigation target. The project aims to develop a new generation of fast urban flood models and the-first-of-its-kind WSUD plannin ....Urban flood modelling at speed and scale. Frequent floods in urban areas cause damages comparable to extreme floods. This is likely to intensify with future urbanisation and climate change. Although Water Sensitive Urban Design (WSUD) offers sustainable urban drainage solutions, there are no models that can select an optimal WSUD system to deliver on a set urban flood mitigation target. The project aims to develop a new generation of fast urban flood models and the-first-of-its-kind WSUD planning tool to support industry and governments to effectively reduce the urban flooding damages. The project outcomes are also applicable for advancing early warning systems and real-time control of floods.Read moreRead less
Formation, photochemistry and fate of gas-phase peroxyl radicals. This project aims to understand how peroxyl radical reactions modulate the composition of air. The gas-phase chemical reactions of organic peroxyl radicals contribute to air quality in clean and polluted environments. However, experimental observations of these reaction intermediates and the complex mechanisms governing their formation and fate are limited. This project will use mass spectrometry and laser-based methods to interro ....Formation, photochemistry and fate of gas-phase peroxyl radicals. This project aims to understand how peroxyl radical reactions modulate the composition of air. The gas-phase chemical reactions of organic peroxyl radicals contribute to air quality in clean and polluted environments. However, experimental observations of these reaction intermediates and the complex mechanisms governing their formation and fate are limited. This project will use mass spectrometry and laser-based methods to interrogate the chemical and photochemical reactions of peroxyl radicals in the gas phase. This project expects to understand the composition and dynamics of the troposphere and inform strategies to improve air quality.Read moreRead less
Development of deformation-failure-mechanism based parameters for design of microstructured optical fibre and photonics assembly. Australia has exceptional quality and depth in photon science research, with a demonstrated capacity to found and grow commercial ventures. However, the optimal design of interconnections in a photonic package is severely restricted by a lack of detailed knowledge of their deformation and failure mechanisms. The proposed study will use novel techniques to create a bas ....Development of deformation-failure-mechanism based parameters for design of microstructured optical fibre and photonics assembly. Australia has exceptional quality and depth in photon science research, with a demonstrated capacity to found and grow commercial ventures. However, the optimal design of interconnections in a photonic package is severely restricted by a lack of detailed knowledge of their deformation and failure mechanisms. The proposed study will use novel techniques to create a basis for mechanism-based deformation and failure models that will then be used to improve the design and lifetime of new type microstructured optical fibres and adhesive assemblies, expanding and enhancing Australia's capacity in the areas.
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Digitally-Integrated Smart Sensing of Diverse Airborne Grass Pollen Sources. Grass pollen is the main outdoor allergen source globally, triggering hayfever and asthma in up to 500 million people. With over 10,000 species, the influence of grass type, location and climate on pollen in the air is not yet known. This is a key issue since subtropical and temperate grasses differ in response to environmental factors. The project aims to use artificial intelligence on digital camera images to learn to ....Digitally-Integrated Smart Sensing of Diverse Airborne Grass Pollen Sources. Grass pollen is the main outdoor allergen source globally, triggering hayfever and asthma in up to 500 million people. With over 10,000 species, the influence of grass type, location and climate on pollen in the air is not yet known. This is a key issue since subtropical and temperate grasses differ in response to environmental factors. The project aims to use artificial intelligence on digital camera images to learn to see local grass flowers and integrate this with air sensors trained to detect grass pollen types. The expected outcomes are new capacities to track airborne grass pollen types. These outcomes can transform how pollen can be monitored to reduce the burden of allergies, and provide evidence of changing airborne pollen loads.
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Development of nanostructured sensors for ultra-sensitive, label-free and selective detection of biological and chemical species. Outcomes will significantly advance the technical and fundamental understanding of sensor assembly and provide guidelines for developing and manufacturing nanostructured sensors, which is critical for next generation nanoscale sensing platforms for health care, medical diagnostics and chemical detection and Australia's emerging sensor industries.