Cultivating numerically significant soil bacteria. The vast majority of soil bacteria have not been able to be studied in the laboratory because they cannot be grown outside the soil. They are therefore termed unculturable. Most of these belong to groups that are completely unstudied. Advances made in the Janssen lab have overcome this impediment to laboratory cultivation of numerically abundant and globally distributed soil bacteria. This project will develop these advances to generate simple a ....Cultivating numerically significant soil bacteria. The vast majority of soil bacteria have not been able to be studied in the laboratory because they cannot be grown outside the soil. They are therefore termed unculturable. Most of these belong to groups that are completely unstudied. Advances made in the Janssen lab have overcome this impediment to laboratory cultivation of numerically abundant and globally distributed soil bacteria. This project will develop these advances to generate simple and widely applicable methods to enable many of the previously unculturable soil bacteria to be studied. This will allow assessments of their ecological roles and biotechnological potentials to be made.Read moreRead less
Molecular phylogeny and biodiversity of the plant family Rutaceae: evidence for Australian-New Caledonian biogeography. The results will contribute biological evidence for geological models of the evolution of New Caledonia and the Southwest Pacific region. Analyses will also contribute to improvement of methods and data interpretation in the field of historical biogeography. The molecular phylogeny will be the foundation for a new predictive classification of Australian Rutaceae at the level ....Molecular phylogeny and biodiversity of the plant family Rutaceae: evidence for Australian-New Caledonian biogeography. The results will contribute biological evidence for geological models of the evolution of New Caledonia and the Southwest Pacific region. Analyses will also contribute to improvement of methods and data interpretation in the field of historical biogeography. The molecular phylogeny will be the foundation for a new predictive classification of Australian Rutaceae at the level of tribes and genera. Improved phylogenetic classification underpins the delivery of biodiversity research, goods and services in Australia. Outcomes of improved taxonomy include species identification for ecological studies, identification of rare species, geographic areas of high conservation value and plants for horticulture.Read moreRead less
A predictive phylogenetic classification for Australian acacias and their tropical legume relatives worldwide. The results of this project will provide the foundation for a new predictive classification of Australian acacias and their relatives, among tropical legumes. Improved phylogenetic classification will underpin the delivery of biodiversity research, goods and services in Australia and neighbouring tropical countries. Outcomes of improved taxonomy include species identification and spec ....A predictive phylogenetic classification for Australian acacias and their tropical legume relatives worldwide. The results of this project will provide the foundation for a new predictive classification of Australian acacias and their relatives, among tropical legumes. Improved phylogenetic classification will underpin the delivery of biodiversity research, goods and services in Australia and neighbouring tropical countries. Outcomes of improved taxonomy include species identification and species selection in various industries and environmental programs. Acacias and legumes are used in agro-forestry, as shade trees for crops, fuel wood, stock feed, nitrogen fixation, planting for land reclamation in arid and salinity-affected areas, and as new plantation timber products. Read moreRead less
Resolving the classification and evolutionary history of the eucalypts. This collaborative project addresses the need to achieve a stable classification of the eucalypts, Australia's most ecologically and commercially important trees. The industry partners are lead agencies with responsibility for classification and identification of biodiversity, delivering taxonomic knowledge for end-users. Despite molecular studies in the last decade, the phylogenetic relationships of a number of the major ....Resolving the classification and evolutionary history of the eucalypts. This collaborative project addresses the need to achieve a stable classification of the eucalypts, Australia's most ecologically and commercially important trees. The industry partners are lead agencies with responsibility for classification and identification of biodiversity, delivering taxonomic knowledge for end-users. Despite molecular studies in the last decade, the phylogenetic relationships of a number of the major subgroups of the eucalypts are unknown. We will sequence new regions of DNA and combine this with morphological data to resolve the relationships of the eucalypt lineages, and hence their classification. Phylogenetic analysis also aids identification of high-value areas for conservation of relictual species.Read moreRead less
Resolving the molecular phylogeny and classification of Australian acacias, a major biodiversity resource. This collaboration with the Royal Botanic Gardens Melbourne will resolve the phylogeny of Australia's largest group of flowering plants, the acacias, to form the basis of a new classification. With more than 960 species, Australian acacias are a major biodiversity resource yet their genetic diversity and evolutionary relationships are poorly known. We will determine the main taxonomic gro ....Resolving the molecular phylogeny and classification of Australian acacias, a major biodiversity resource. This collaboration with the Royal Botanic Gardens Melbourne will resolve the phylogeny of Australia's largest group of flowering plants, the acacias, to form the basis of a new classification. With more than 960 species, Australian acacias are a major biodiversity resource yet their genetic diversity and evolutionary relationships are poorly known. We will determine the main taxonomic groups and their relationships by sequencing the DNA of more than 300 species. Acacias are of ecological importance and of use in land reclamation, horticulture, and rural craftwood industries.
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Was there an unusual environment with equally remarkable inhabitants in Early Cretaceous southeast Australia? After more than two decades of effort, there is strong evidence that Early Cretaceous southeastern Australia was inhabited by a remarkably diverse polar terrestrial vertebrate fauna adapted to the coldest environment known to have existed anywhere in the late Mesozoic. In this unusual terrestrial habitat for that time, temnospondyl amphibians and allosaurid dinosaurs survived long ....Was there an unusual environment with equally remarkable inhabitants in Early Cretaceous southeast Australia? After more than two decades of effort, there is strong evidence that Early Cretaceous southeastern Australia was inhabited by a remarkably diverse polar terrestrial vertebrate fauna adapted to the coldest environment known to have existed anywhere in the late Mesozoic. In this unusual terrestrial habitat for that time, temnospondyl amphibians and allosaurid dinosaurs survived long after becoming extinct elsewhere. Here, too, are found what may be the oldest known and yet remarkably advanced placental mammals, the group to which we belong. To further corroborate or refute these hypotheses, some of which are highly contentious, is the aim of this project.Read moreRead less
Molecular evolution and toxinology of colubrid snake venom toxins. This project proposes to examine the origin and evolution of venom systems in advanced snakes (Caenophidia) focusing on the colubrid radiation comprising the rear-fanged species. Demonstration by us of the presence of a potent postsynaptic neurotoxin in the Durvenoy's secretions of the Asian ratsnake Elaphe radiata, an archetypal non-venomous colubrid species, forced a fundamental rethink of venom evolution. The toxin is homologo ....Molecular evolution and toxinology of colubrid snake venom toxins. This project proposes to examine the origin and evolution of venom systems in advanced snakes (Caenophidia) focusing on the colubrid radiation comprising the rear-fanged species. Demonstration by us of the presence of a potent postsynaptic neurotoxin in the Durvenoy's secretions of the Asian ratsnake Elaphe radiata, an archetypal non-venomous colubrid species, forced a fundamental rethink of venom evolution. The toxin is homologous with the three finger toxins, previously thought unique to elapids, and supports the role of venom as a key evolutionary innovation in the diversification of advanced snakes. This project extends this work to other species and toxin families.Read moreRead less
Mechanisms of colour production and the evolution of animal signals. This project aims to reveal how diverse colours are produced in reptiles and the information these colours convey about individual health, condition and performance. The project evaluates how stress affects both pigment deposition and the nano-structure of cells and tissues, which together produce colour. By comparing similar colours generated by two entirely different classes of pigment (carotenoids and pteridines), this proje ....Mechanisms of colour production and the evolution of animal signals. This project aims to reveal how diverse colours are produced in reptiles and the information these colours convey about individual health, condition and performance. The project evaluates how stress affects both pigment deposition and the nano-structure of cells and tissues, which together produce colour. By comparing similar colours generated by two entirely different classes of pigment (carotenoids and pteridines), this project will provide new insights into the evolution of animal coloration, and will significantly enhance our understanding of pteridines, one of the most prevalent but least understood classes of pigment in vertebrates.Read moreRead less
Old brains, new data - early evolution of structural complexity in the vertebrate head. Of the all the complex structures biology has provided, the evolution of the vertebrate brain and its sensory organs is perhaps the most enigmatic. The fossil record occasionally provides a chance to trace this evolution, but only with the use of novel X-ray scanning techniques can these secrets be detailed in three dimensions. Exploiting the exceptional fossil record from Australia and China, this team will ....Old brains, new data - early evolution of structural complexity in the vertebrate head. Of the all the complex structures biology has provided, the evolution of the vertebrate brain and its sensory organs is perhaps the most enigmatic. The fossil record occasionally provides a chance to trace this evolution, but only with the use of novel X-ray scanning techniques can these secrets be detailed in three dimensions. Exploiting the exceptional fossil record from Australia and China, this team will for the first time collect a vast comparative data base which will yield clues on the early evolution of the ear, eye and brain. Read moreRead less
Genome dynamics following plastid endosymbiosis. Plastid endosymbiosis events (enslavement of an algal cell inside of a host cell to form a plastid) are difficult to pinpoint because the genomic data required for a broad array of species are rarely available. Furthermore, the classical method used to infer endosymbiotic gene transfers is being criticised. This project will elucidate the origin of chlorarachniophyte and dinoflagellate plastids and characterise the genome dynamics following endosy ....Genome dynamics following plastid endosymbiosis. Plastid endosymbiosis events (enslavement of an algal cell inside of a host cell to form a plastid) are difficult to pinpoint because the genomic data required for a broad array of species are rarely available. Furthermore, the classical method used to infer endosymbiotic gene transfers is being criticised. This project will elucidate the origin of chlorarachniophyte and dinoflagellate plastids and characterise the genome dynamics following endosymbiosis. It uses densely sampled genome data obtained with high-throughput sequencing technologies. Simulation studies will be used to evaluate methods for inferring endosymbiotic gene transfer and alignment-free methods will be used to improve phylogenomic pipelines.Read moreRead less