Fitting non-Gaussian diffusion models to evolutionary data: towards a generalized framework for phylogenetic comparative analyses. This project aims to develop cutting-edge statistical methods for evolutionary biology in order to answer big questions using data derived from multiple species. Such methods are needed because of the variety of multi-species data that are becoming available, which cannot be dealt with correctly using current methods. The research is significant because it will provi ....Fitting non-Gaussian diffusion models to evolutionary data: towards a generalized framework for phylogenetic comparative analyses. This project aims to develop cutting-edge statistical methods for evolutionary biology in order to answer big questions using data derived from multiple species. Such methods are needed because of the variety of multi-species data that are becoming available, which cannot be dealt with correctly using current methods. The research is significant because it will provide a new way of fitting a wide class of statistical models to evolutionary data, in a very general setting. Further, this project will unite current methodology in a broader framework so that the proposed new methods are a generalisation of currently accepted theory. The outcomes will include a freely-available software package that implements the methods in a user-friendly form.Read moreRead less
Efficient phylogenetic methods that manage the curse of genomic complexity. This project aims to develop new methods and software to infer the evolutionary history of organisms using genomic data. These new phylogenomic methods need to take account of the complexity of evolutionary processes and/or patterns in time (along the evolutionary tree) and space (along the genome). This project is significant because these methods must merge mathematics and statistics with High-Performance Computing to ....Efficient phylogenetic methods that manage the curse of genomic complexity. This project aims to develop new methods and software to infer the evolutionary history of organisms using genomic data. These new phylogenomic methods need to take account of the complexity of evolutionary processes and/or patterns in time (along the evolutionary tree) and space (along the genome). This project is significant because these methods must merge mathematics and statistics with High-Performance Computing to handle the huge quantities of genetic data and the complexity of evolution itself. An important expected outcome of this project will be the development and release of freely-available software that incorporates these new methods. This project expects to benefit scientists who need to infer phylogenies from genomic data. Read moreRead less
Predicting Biodiversity from Population Dynamics. This research aims to deepen our understanding of how changes to the environment, including those attributable to human activities, influence the ecological and evolutionary mechanisms that generate and maintain biodiversity. This understanding is of urgent importance, in light of the predicted changes in climate and habitat over the next century, because biodiversity is critical to the proper functioning of ecosystems that human societies depend ....Predicting Biodiversity from Population Dynamics. This research aims to deepen our understanding of how changes to the environment, including those attributable to human activities, influence the ecological and evolutionary mechanisms that generate and maintain biodiversity. This understanding is of urgent importance, in light of the predicted changes in climate and habitat over the next century, because biodiversity is critical to the proper functioning of ecosystems that human societies depend upon. The graduate student involved in this research will have the opportunity to receive in-depth training as part of a cross-disciplinary collaboration that combines mathematics, ecology, evolution, and paleontology.
Read moreRead less
Testing links between genomic and morphological evolutionary rates. This project aims to identify, understand, and characterise patterns of evolutionary rates across different levels of biological variation. The project expects to generate knowledge about the tempo and mode of evolution by using a phylogenetic approach to test fundamental models of evolutionary rates, including the link between rates of genomic and morphological evolution. Expected outcomes of this project include detailed insig ....Testing links between genomic and morphological evolutionary rates. This project aims to identify, understand, and characterise patterns of evolutionary rates across different levels of biological variation. The project expects to generate knowledge about the tempo and mode of evolution by using a phylogenetic approach to test fundamental models of evolutionary rates, including the link between rates of genomic and morphological evolution. Expected outcomes of this project include detailed insights into the tempo and mode of macroevolution, better modelling of genomic and phenotypic evolution, and improved design of studies in evolutionary genomics. Benefits of the project include greater understanding of the evolutionary processes that have generated the diversity of the Australian biota.Read moreRead less
Discovery Early Career Researcher Award - Grant ID: DE190100544
Funder
Australian Research Council
Funding Amount
$344,682.00
Summary
The drivers of genome evolution and diversification in marsupials. This project aims to investigate the impact of the four basic forces of evolution, mutation, selection, neutral drift, and gene flow, on the genome. Genome-scale data have a signature of these forces and extracting it would greatly improve the quality of evolutionary models fit to the data, but the framework to identify the evolutionary forces has not been developed. This project will develop tests for assessing the impact of the ....The drivers of genome evolution and diversification in marsupials. This project aims to investigate the impact of the four basic forces of evolution, mutation, selection, neutral drift, and gene flow, on the genome. Genome-scale data have a signature of these forces and extracting it would greatly improve the quality of evolutionary models fit to the data, but the framework to identify the evolutionary forces has not been developed. This project will develop tests for assessing the impact of the primary evolutionary forces on the genome, and test these methods using simulations. The new framework of genomic analysis will be disseminated through an intuitive software package, and will be used to estimate with unprecedented confidence the history of diversification and genome evolution of marsupials.Read moreRead less
Unravelling the molecular diversity and evolution of centipede venoms. The project intends to improve understanding of venom evolution in centipedes. Venoms have emerged as a rich source of pharmacological tools with potential for development into therapeutics and bioinsecticides. However, venoms-based discovery has been limited by the narrow taxonomical range of animals studied, with many groups of venomous animals overlooked. One such group is centipedes, whose venoms contain diverse toxins th ....Unravelling the molecular diversity and evolution of centipede venoms. The project intends to improve understanding of venom evolution in centipedes. Venoms have emerged as a rich source of pharmacological tools with potential for development into therapeutics and bioinsecticides. However, venoms-based discovery has been limited by the narrow taxonomical range of animals studied, with many groups of venomous animals overlooked. One such group is centipedes, whose venoms contain diverse toxins that differ between taxa. This project aims to provide an insight into centipede venom evolution, and how it might be constrained by venom-gland morphology. This study seeks to contribute to our understanding of protein evolution and direct biodiscovery efforts around centipede venom.Read moreRead less
Turning Selaginella into a model of plant reproductive evolution and ecology. The ancient genus Selaginella can reveal how natural selection shaped fundamental traits of plant reproduction like morphological differentiation of spores (a prerequisite for the evolution of seeds) and sexual division of reproductive investment. However, almost nothing is known of the ‘ecological theatre’ in which Selaginella evolves. This project will examine the worldwide phylogenetic pattern of reproductive traits ....Turning Selaginella into a model of plant reproductive evolution and ecology. The ancient genus Selaginella can reveal how natural selection shaped fundamental traits of plant reproduction like morphological differentiation of spores (a prerequisite for the evolution of seeds) and sexual division of reproductive investment. However, almost nothing is known of the ‘ecological theatre’ in which Selaginella evolves. This project will examine the worldwide phylogenetic pattern of reproductive traits in the genus, and combine field and greenhouse studies of Australian and Malaysian species in order to test fundamental ideas in evolutionary ecology such as the theory of sex allocation, and begin to establish the ecological and adaptive counterpart to Selaginella’s emerging role as a genomic model organism.Read moreRead less
A modelling analysis of the implications of biogenic feedbacks on environment for the adaptation of ecosystems. The sustainable management of Australia's living resources depends critically on a deep understanding of the fundamental properties of ecosystems. These properties will determine the response of an ecosystem to perturbation. Anthropogenic perturbation of ecosystems, whether instantiated by living resource harvesting, habitat destruction, species invasions, pollution or climate change, ....A modelling analysis of the implications of biogenic feedbacks on environment for the adaptation of ecosystems. The sustainable management of Australia's living resources depends critically on a deep understanding of the fundamental properties of ecosystems. These properties will determine the response of an ecosystem to perturbation. Anthropogenic perturbation of ecosystems, whether instantiated by living resource harvesting, habitat destruction, species invasions, pollution or climate change, is the greatest current threat to Australia's biodiversity and hence the continued functioning of the systems that we rely on for maintaining our environment in a habitable state and for providing economic benefit. This research will attempt to discover some of these properties, and assess their implications for the sustainably management of our environment.Read moreRead less
Resolving insect evolution. Our poor understanding of the evolution of insects, life’s most successful group, is a huge gap in our knowledge of nature. By analysing genomic data the project will resolve the insect evolutionary tree and discover what drove insect evolution. This will expand our knowledge of how evolution works - a vital part of conserving our biological diversity.
The role of genome reorganisation in adaptation and speciation. Local adaptation and speciation are fundamental evolutionary processes that rely on changes to the genome. However, the role of genome architecture (e.g. chromosomal rearrangements, gene duplications) in driving these processes is poorly understood. This project will use advanced comparative genomics and bioinformatics to examine the role of chromosome rearrangements in driving adaptation and speciation, and evaluate rates of molec ....The role of genome reorganisation in adaptation and speciation. Local adaptation and speciation are fundamental evolutionary processes that rely on changes to the genome. However, the role of genome architecture (e.g. chromosomal rearrangements, gene duplications) in driving these processes is poorly understood. This project will use advanced comparative genomics and bioinformatics to examine the role of chromosome rearrangements in driving adaptation and speciation, and evaluate rates of molecular evolution between the X-chromosome and autosomes. Utilising Australia’s endemic mammalian fauna as a tractable model system, I will link population processes with macro-evolutionary outcomes to show how genome architecture underpins biodiversity.Read moreRead less