Stochastic Modelling of Genetic Regulatory Networks: Subtitle - Genetic Regulation is a Noisy Business. The completion of the human genome marked the culmination of one hundred years of reductionist science in cell biology. Although further bioinformatics analysis will continue, the focus is shifting towards synthesis and understanding how the regulatory genetic components dynamically interact to form functional phenotypes. The key to this is the understanding of the roles of stochasticity in ....Stochastic Modelling of Genetic Regulatory Networks: Subtitle - Genetic Regulation is a Noisy Business. The completion of the human genome marked the culmination of one hundred years of reductionist science in cell biology. Although further bioinformatics analysis will continue, the focus is shifting towards synthesis and understanding how the regulatory genetic components dynamically interact to form functional phenotypes. The key to this is the understanding of the roles of stochasticity in cellular processes. This project will explore these roles and will develop an integrated complex systems modelling, simulation and visualisation framework. This will be used on an exemplar application for lineage commitment in haematopoiesis and for exploring and validating genetic regulatory models in general.Read moreRead less
Origin of animal sensory and nervous systems: a case study in cell type evolution. The origin of the nerve cell and the nervous system allowed the first animals to interact with their biotic and abiotic environment in rapid and complex ways. These capabilities are the primary agents for success in the animal kingdom, underpinning the ability to capture food, avoid predation, and find a mate. These same nerve cells have bestowed on the human brain cognitive abilities that have driven our biologic ....Origin of animal sensory and nervous systems: a case study in cell type evolution. The origin of the nerve cell and the nervous system allowed the first animals to interact with their biotic and abiotic environment in rapid and complex ways. These capabilities are the primary agents for success in the animal kingdom, underpinning the ability to capture food, avoid predation, and find a mate. These same nerve cells have bestowed on the human brain cognitive abilities that have driven our biological and cultural evolution. Despite the phenomenal importance of the nerve cell, we know almost nothing about its origin and early evolution. This basic research project seeks to make a major contribution towards addressing this gap in knowledge.Read moreRead less
Ecological significance of coral disease on the Great Barrier Reef. Coral disease has contributed significantly to the accelerating deterioration of coral reefs globally, but its impact on the Great Barrier Reef is unknown. This project will determine the prevalence of coral disease on the GBR and evaluate the potential threat it poses to reef health. It will build Australian capacity in the ecology and pathology of coral disease, an emergent global research priority, and provide an important ....Ecological significance of coral disease on the Great Barrier Reef. Coral disease has contributed significantly to the accelerating deterioration of coral reefs globally, but its impact on the Great Barrier Reef is unknown. This project will determine the prevalence of coral disease on the GBR and evaluate the potential threat it poses to reef health. It will build Australian capacity in the ecology and pathology of coral disease, an emergent global research priority, and provide an important benchmark for determining whether disease incidence is increasing. It will provide insights into potential links between environmental / anthropogenic stressors and disease incidence, and identify potential threats to coral reef health.Read moreRead less
Aquatic eye design: sharks and rays as models of underwater colour and luminance vision. Sharks are usually assumed to be colour blind. We have discovered that they may in fact see colour very well and that the eyes of different species are adapted to their particular lifestyles. Our research will help to raise the profile of sharks and portray them as animals with advanced sensory systems and complex visual behaviours rather than just dangerous killing machines. Studying the vision of sharks m ....Aquatic eye design: sharks and rays as models of underwater colour and luminance vision. Sharks are usually assumed to be colour blind. We have discovered that they may in fact see colour very well and that the eyes of different species are adapted to their particular lifestyles. Our research will help to raise the profile of sharks and portray them as animals with advanced sensory systems and complex visual behaviours rather than just dangerous killing machines. Studying the vision of sharks may also help to reduce the number (currently >50,000) that are killed each year as bycatch by Australian long-line fisheries and make a valuable contribution to one of Australia's National Research Priorities (an Environmentally Sustainable Australia) for managing and conserving our biodiversity.Read moreRead less
Cross-Entropy Methods in Complex Biological Systems. The Cross-Entropy method provides a powerful new way to find superior solutions to complicated optimisation problems in biology, ranging from better design and implementation of medical treatments to an increased understanding of complex ecosystems.
Applications of Bayesian methods in Genomics and Comparative Genomics. Bayesian statistics provides a unified and versatile approach to problems of data analysis, inference and hypothesis testing. This project will involve the application of Bayesian methods to four topics of commercial and scientific importance in the fields of Genomics and Comparative Genomics. The four topics are: data analysis for a novel DNA sequencing technology, investigating genomic structure using multiple change-point ....Applications of Bayesian methods in Genomics and Comparative Genomics. Bayesian statistics provides a unified and versatile approach to problems of data analysis, inference and hypothesis testing. This project will involve the application of Bayesian methods to four topics of commercial and scientific importance in the fields of Genomics and Comparative Genomics. The four topics are: data analysis for a novel DNA sequencing technology, investigating genomic structure using multiple change-point analysis, phlogenetic inference with multiple genes and detection of incongruent phylogenies. The overall goal of the project is to advance understanding of the structure, function and evolution of genomes.Read moreRead less
Linkage Infrastructure, Equipment And Facilities - Grant ID: LE0347875
Funder
Australian Research Council
Funding Amount
$280,000.00
Summary
Enhanced genetic analysis facilities at James Cook University. The acquisition of molecular data, DNA sequences or allele frequencies, is the major requirement of almost all laboratory research in the life sciences, and is the rate-limiting step for many research projects locally. The current application underpins novel research initiatives at James Cook University, and is intended to provide centralized state-of-the-art high throughput DNA sequencing and genotyping facility for the north Queens ....Enhanced genetic analysis facilities at James Cook University. The acquisition of molecular data, DNA sequences or allele frequencies, is the major requirement of almost all laboratory research in the life sciences, and is the rate-limiting step for many research projects locally. The current application underpins novel research initiatives at James Cook University, and is intended to provide centralized state-of-the-art high throughput DNA sequencing and genotyping facility for the north Queensland life sciences community.Read moreRead less
Vision and remote sensing: using nature's technology to examine the health of The Great Barrier Reef and Moreton Bay. We aim to use what is known and what we will discover about animals visual systems to examine environmental health on The Great Barrier Reef and Moreton Bay. Technology and knowledge from 8 university departments, 4 industry partners, and 7 international collaborators will be combined to both learn and provide information. The innovative aspect of our approach is to examine the w ....Vision and remote sensing: using nature's technology to examine the health of The Great Barrier Reef and Moreton Bay. We aim to use what is known and what we will discover about animals visual systems to examine environmental health on The Great Barrier Reef and Moreton Bay. Technology and knowledge from 8 university departments, 4 industry partners, and 7 international collaborators will be combined to both learn and provide information. The innovative aspect of our approach is to examine the world with the eyes of birds, fish and invertebrates. Tricks animals employ to solve visual tasks will be implemented at scales of instrumentation from hand-held to remote sensing and used to address problems such as coral reef bleaching.Read moreRead less
Multi-scale modelling of cell migration in developmental biology. Interpretative and predictive tools are needed for the comprehensive understanding of directed cell migration in the medical sciences. Mathematical models and modelling methodologies developed in this project will make a significant contribution to the investigation of cell migration and the testing and generation of hypotheses. Such models are needed to understand observed cellular patterns. This project will contribute to knowle ....Multi-scale modelling of cell migration in developmental biology. Interpretative and predictive tools are needed for the comprehensive understanding of directed cell migration in the medical sciences. Mathematical models and modelling methodologies developed in this project will make a significant contribution to the investigation of cell migration and the testing and generation of hypotheses. Such models are needed to understand observed cellular patterns. This project will contribute to knowledge of normal and abnormal developmental processes, especially in embryonic growth. Understanding these processes should lead to prediction and treatment of congenital disorders and contribute to a healthy start to life.Read moreRead less
Early life-history sex determination in reef fishes. In many fishes, gender is influenced by environmental conditions experienced after hatching. However, the timing, cues, and developmental pathways of sex determination are poorly understood. This research will establish how environmental conditions during the juvenile phase control patterns of sex determination in reef fishes and determine if sex differentiation is a response to local- or broad-scale environmental cues. An individual's gender ....Early life-history sex determination in reef fishes. In many fishes, gender is influenced by environmental conditions experienced after hatching. However, the timing, cues, and developmental pathways of sex determination are poorly understood. This research will establish how environmental conditions during the juvenile phase control patterns of sex determination in reef fishes and determine if sex differentiation is a response to local- or broad-scale environmental cues. An individual's gender has profound and significant consequences for all aspects of its biology and the mechanism of sex determination has important implications for population ecology. This project will test theory in evolutionary ecology and greatly benefit the management of reef fisheries.Read moreRead less