Small is beautiful: Did gene-rich regions of mammal chromosomes evolve from microchromosomes? Most birds and reptile genomes feature many tiny microchromosomes. These are not junk, as previously thought, but contain most of the genes. Mammals lack microchromosomes, but contain gene-rich regions with similar attributes. We suggest that microchromosomes originated by genome duplication, and evolved into the gene-rich regions of mammalian chromosomes. We will test this hypothesis by comparing seque ....Small is beautiful: Did gene-rich regions of mammal chromosomes evolve from microchromosomes? Most birds and reptile genomes feature many tiny microchromosomes. These are not junk, as previously thought, but contain most of the genes. Mammals lack microchromosomes, but contain gene-rich regions with similar attributes. We suggest that microchromosomes originated by genome duplication, and evolved into the gene-rich regions of mammalian chromosomes. We will test this hypothesis by comparing sequences and genes in microchromosomes of birds, reptiles and monotremes. This will clarify the origin and evolution of the ?microgenome?, establish its suitability as a model for vertebrate genome organisation, and demonstrate whether microchromosomes are the ancestors of the gene-rich regions of mammalian chromosomes.Read moreRead less
Positrons in biosystems. This project aims to improve our understanding of the damage processes in Positron Emission Tomography (PET). PET is a widely used medical imaging technique, but there are gaps in our understanding of the underlying interactions, in particular in the case of the radiation damage induced during the process. By using new models incorporating accurate descriptions of interactions processes, verified by experimental measurement, this project will develop a new model of posit ....Positrons in biosystems. This project aims to improve our understanding of the damage processes in Positron Emission Tomography (PET). PET is a widely used medical imaging technique, but there are gaps in our understanding of the underlying interactions, in particular in the case of the radiation damage induced during the process. By using new models incorporating accurate descriptions of interactions processes, verified by experimental measurement, this project will develop a new model of positron transport in PET. The project will allow validation of predictions from the model by undertaking experiments in liquid water.Read moreRead less
The origins of electroreception and nocturnality in the earliest known jawed vertebrates and their bearing on vertebrate diversification. This project aims to discover primary new data to pinpoint the timing, anatomical origins and phylogenetic significance when two key sensory systems first appeared in modern vertebrates: electroreception and specialised nocturnal vision. Such abilities today allow high diversity of vertebrates to co-exist within the same geographical range, for example on trop ....The origins of electroreception and nocturnality in the earliest known jawed vertebrates and their bearing on vertebrate diversification. This project aims to discover primary new data to pinpoint the timing, anatomical origins and phylogenetic significance when two key sensory systems first appeared in modern vertebrates: electroreception and specialised nocturnal vision. Such abilities today allow high diversity of vertebrates to co-exist within the same geographical range, for example on tropical reefs or rainforest communities, through careful temporal niche partitioning where reliance on other sensory systems takes over from vision and olfaction as the principal method of prey detection. This project aims to elucidate how the modern fish diversity was shaped by such significant early evolutionary events.Read moreRead less
Positron Nano-Dosimetry: Fundamental Measurements of Positron Interactions and their use in State-of-the-Art Modelling of Positron Transport. This proposal will provide unique experimental and theoretical information on how positrons, the electron antiparticles, interact with matter, in particular with biologically important molecules. This data will be used in a unique set of modelling approaches which will provide, for the first time, an insight into how positrons are transported through gases ....Positron Nano-Dosimetry: Fundamental Measurements of Positron Interactions and their use in State-of-the-Art Modelling of Positron Transport. This proposal will provide unique experimental and theoretical information on how positrons, the electron antiparticles, interact with matter, in particular with biologically important molecules. This data will be used in a unique set of modelling approaches which will provide, for the first time, an insight into how positrons are transported through gases, liquids and ultimately, soft matter. It will thus have important ramifications for diagnostic tools such as Positron Emission Tomography. The fundamental research will also shed light on one of the key 'mysteries' of life - why the biological building blocks of life possess a definite " handedness", or chirality.Read moreRead less
Novel source of excited metastable atoms for Atom Trap Trace Analysis. This project aims to understand and to control light-induced processes in atoms by using finely shaped and tailored laser pulses, focusing on efficient production of excited metastable atoms. This is critical for efficient Atom Trap Trace Analysis, the most advanced technique for dating ground water and geological samples. Expected outcomes of this project include new and enhanced knowledge of physics of light-matter interact ....Novel source of excited metastable atoms for Atom Trap Trace Analysis. This project aims to understand and to control light-induced processes in atoms by using finely shaped and tailored laser pulses, focusing on efficient production of excited metastable atoms. This is critical for efficient Atom Trap Trace Analysis, the most advanced technique for dating ground water and geological samples. Expected outcomes of this project include new and enhanced knowledge of physics of light-matter interactions, developing an efficient, clean source of excited metastable atoms, and integrating that source into the Australian National Facility for dating geological samples. This should provide significant benefits, such as significant improvement of operational efficiency and productivity of that facility.Read moreRead less
Imaging the spatial distribution of forces that bind quarks to a proton. This project will perform supercomputer simulations to resolve the distribution of forces acting on quarks inside the proton. New knowledge will be generated in the area of fundamental strong-interaction physics by developing innovative approaches to image novel features that have not been possible in the past. The outcomes will therefore open new research possibilities by expanding the capacity of the international communi ....Imaging the spatial distribution of forces that bind quarks to a proton. This project will perform supercomputer simulations to resolve the distribution of forces acting on quarks inside the proton. New knowledge will be generated in the area of fundamental strong-interaction physics by developing innovative approaches to image novel features that have not been possible in the past. The outcomes will therefore open new research possibilities by expanding the capacity of the international community to study strong interaction physics—including direct relevance to experimental research at the recently-upgraded Jefferson Lab in the US. In analogy to Rutherford's atomic model, the results will have benefit to future generations of humanity with a deeper understanding of the structure of matter.Read moreRead less
Supercomputing the tomography of the proton. This project aims to produce theoretical determinations of the quark and gluon distributions of the proton through advanced supercomputer simulations. The project will generate new knowledge in the area of fundamental strong-interaction physics by developing innovative approaches to image structures that have not been possible in the past. This project expects to expand the capacity of the international community to study strong interaction physics, i ....Supercomputing the tomography of the proton. This project aims to produce theoretical determinations of the quark and gluon distributions of the proton through advanced supercomputer simulations. The project will generate new knowledge in the area of fundamental strong-interaction physics by developing innovative approaches to image structures that have not been possible in the past. This project expects to expand the capacity of the international community to study strong interaction physics, including direct relevance to experimental research at the recently-upgraded Jefferson Lab in the US. In analogy to Rutherford's atomic model, the results will have benefit to future generations of humanity with a deeper understanding of the structure of matter.Read moreRead less
Emergent Phenomena in the Foundation of Matter. This project aims to explore the finite-matter-density features of the relativistic field theory of the strong interactions, Quantum Chromodynamics (QCD). Drawing on national supercomputing resources, this project will undertake QCD calculations of unprecedented complexity to discover emergent phenomena in the ground-state quantum fields that form the foundation of matter. By studying their evolution under temperature and matter density and explori ....Emergent Phenomena in the Foundation of Matter. This project aims to explore the finite-matter-density features of the relativistic field theory of the strong interactions, Quantum Chromodynamics (QCD). Drawing on national supercomputing resources, this project will undertake QCD calculations of unprecedented complexity to discover emergent phenomena in the ground-state quantum fields that form the foundation of matter. By studying their evolution under temperature and matter density and exploring their contribution to the structure of the nucleon and its excitations, the research will advance theoretical understanding and challenge experimental programs. Benefits include transferable skills in advanced analytical techniques, high-performance computing, and scientific data visualisation.Read moreRead less
Resolving evolutionary problems at the fish-tetrapod transition. The project aims to investigate very early Australian tetrapod trackways and conduct fieldwork to resolve the place of origin and timing of the evolution of the first tetrapods. The evolution of fishes to tetrapods was one of the key events in evolution. Studies on Northern Hemisphere fossils place an origin for the group around 380 million years ago. Australian fossils suggest a much older origin. New micro computed tomography dat ....Resolving evolutionary problems at the fish-tetrapod transition. The project aims to investigate very early Australian tetrapod trackways and conduct fieldwork to resolve the place of origin and timing of the evolution of the first tetrapods. The evolution of fishes to tetrapods was one of the key events in evolution. Studies on Northern Hemisphere fossils place an origin for the group around 380 million years ago. Australian fossils suggest a much older origin. New micro computed tomography data from Australian 3-D fossil fishes, combined with study of rare tetrapod gill arch bones, would enable us to determine the origins of tetrapod air-breathing and its ecological setting. The project may facilitate a rewriting of vertebrate evolution's most significant first step.Read moreRead less
Structure of Hadronic Excitations from Lattice Quantum Chromodynamics. Quantum chromodynamics describes the fundamental strong interactions between quarks and gluons as they compose hadrons such as the proton or neutron. Beyond these lowest-energy systems, the quantum mechanical excitation spectra display a rich and complex structure. Remarkably, little is known about the internal structure of these states. The central goal of this project is to unveil the nature of hadrons and their excited sta ....Structure of Hadronic Excitations from Lattice Quantum Chromodynamics. Quantum chromodynamics describes the fundamental strong interactions between quarks and gluons as they compose hadrons such as the proton or neutron. Beyond these lowest-energy systems, the quantum mechanical excitation spectra display a rich and complex structure. Remarkably, little is known about the internal structure of these states. The central goal of this project is to unveil the nature of hadrons and their excited states using the first principles approach of lattice gauge theory. By elucidating aspects of hadron structure in terms of the most fundamental non-perturbative quark and gluon fields, the project will create new knowledge impacting on renowned experimental programs at international facilities.Read moreRead less