Data-led bioengineering to uncover hidden chemical wealth in bacteria. The soil bacteria Nocardia are an untapped source of industrially prized chemical compounds called natural products. This project aims to develop innovative bioprospecting genomics technologies built from the disciplines of microbiology, biochemistry and computational statistics to discover hundreds of new natural products in Nocardia. This project will unlock the diversity of potent new enzymes and molecules with high econom ....Data-led bioengineering to uncover hidden chemical wealth in bacteria. The soil bacteria Nocardia are an untapped source of industrially prized chemical compounds called natural products. This project aims to develop innovative bioprospecting genomics technologies built from the disciplines of microbiology, biochemistry and computational statistics to discover hundreds of new natural products in Nocardia. This project will unlock the diversity of potent new enzymes and molecules with high economic value that could include insecticides to protect crops, bioactives to fight diseases, or new enzymes for food and biofuel production. This research unlocks enormous hidden chemical potential in soil bacteria, to build sustainable national economic growth through innovative, high-value industrial chemical development.Read moreRead less
A link between antibiotic resistance and bacterial sporulation. This project aims to define the sporulation process in the bacterium Clostridium difficile, and advance our understanding of a link between antibiotic use and sporulation. To survive in hostile environments, some bacteria produce a dormant and resilient cell form called a spore which can survive for many years in unfavourable environments, but our understanding of how this process occurs is limited. This project will provide a deepe ....A link between antibiotic resistance and bacterial sporulation. This project aims to define the sporulation process in the bacterium Clostridium difficile, and advance our understanding of a link between antibiotic use and sporulation. To survive in hostile environments, some bacteria produce a dormant and resilient cell form called a spore which can survive for many years in unfavourable environments, but our understanding of how this process occurs is limited. This project will provide a deeper understanding of the sporulation process and the long-lasting detrimental impact of antibiotic use. The project expects to provide economic benefits, reduce environmental microbial contamination and contribute to better health of animals and humans.Read moreRead less
Discovery Early Career Researcher Award - Grant ID: DE240100316
Funder
Australian Research Council
Funding Amount
$435,431.00
Summary
Population genomic methods for modelling bacterial pathogen evolution. This project aims to develop novel techniques to model bacterial genome evolution and improve our understanding of how major agricultural and human pathogens, including Enterococcus, Salmonella and E. coli, evolve. The project expects to generate new knowledge about how horizontal gene transfer shapes the evolution of bacteria and how these dynamics vary over different temporal scales. Expected outcomes include methodological ....Population genomic methods for modelling bacterial pathogen evolution. This project aims to develop novel techniques to model bacterial genome evolution and improve our understanding of how major agricultural and human pathogens, including Enterococcus, Salmonella and E. coli, evolve. The project expects to generate new knowledge about how horizontal gene transfer shapes the evolution of bacteria and how these dynamics vary over different temporal scales. Expected outcomes include methodological advances that will enable the analysis of massive contemporary datasets. These methods and resulting analyses will provide significant benefits including informing the design of superior long-term interventions to reduce bacterial disease in both agriculture and health that are robust to the evolution of bacteria.Read moreRead less
Molecular insights into bacterial metal ion homeostasis and toxicity. This project aims to measure bacterial cellular metal concentrations, elucidate mechanisms cells use to adapt to changing extracellular metal concentrations, and reveal the molecular targets of metal toxicity. Metal ions are essential to all forms of life, and half of all proteins use metal ions for cellular chemical processes. However, how cells precisely balance sufficient metal ions for essential cellular chemistry without ....Molecular insights into bacterial metal ion homeostasis and toxicity. This project aims to measure bacterial cellular metal concentrations, elucidate mechanisms cells use to adapt to changing extracellular metal concentrations, and reveal the molecular targets of metal toxicity. Metal ions are essential to all forms of life, and half of all proteins use metal ions for cellular chemical processes. However, how cells precisely balance sufficient metal ions for essential cellular chemistry without accumulating a toxic excess (metal homeostasis) is poorly understood. Discovering the roles of metal ions in bacterial cells will be key to defining the chemical biology of living systems and will provide information essential to understanding how microbes adapt to changing environments.Read moreRead less
New molecular tools to study the mechanisms of bacterial metal homeostasis. This project aims to provide new insight into how metal ion uptake is regulated. It will precisely measure the cellular concentrations of metal ions, reveal the roles of metal ions in essential cellular processes, and identify the molecular targets of metal toxicity. Metal ions are essential to all forms of life and are used by up to half of all proteins to facilitate cellular chemical processes. The intended outcome of ....New molecular tools to study the mechanisms of bacterial metal homeostasis. This project aims to provide new insight into how metal ion uptake is regulated. It will precisely measure the cellular concentrations of metal ions, reveal the roles of metal ions in essential cellular processes, and identify the molecular targets of metal toxicity. Metal ions are essential to all forms of life and are used by up to half of all proteins to facilitate cellular chemical processes. The intended outcome of the research is to provide new fundamental knowledge of the roles of metal ions in bacterial cells; knowledge that will be key to defining the chemical biology of living systems and will provide information essential to understanding how microbes adapt to changing environments.Read moreRead less
Discovery Early Career Researcher Award - Grant ID: DE170100310
Funder
Australian Research Council
Funding Amount
$360,533.00
Summary
Atmospheric trace gases: Fuelling the dormant microbial majority. This project aims to determine the physiological roles and ecological significance of hydrogen, methane and carbon monoxide scavenging. Bacteria adapt to adverse environmental conditions such as energy-starvation by entering dormant states. The fuel sources that sustain this dormant majority have yet to be resolved. Aerobic soil bacteria survive by scavenging trace gases from the atmosphere; they literally live on thin air. These ....Atmospheric trace gases: Fuelling the dormant microbial majority. This project aims to determine the physiological roles and ecological significance of hydrogen, methane and carbon monoxide scavenging. Bacteria adapt to adverse environmental conditions such as energy-starvation by entering dormant states. The fuel sources that sustain this dormant majority have yet to be resolved. Aerobic soil bacteria survive by scavenging trace gases from the atmosphere; they literally live on thin air. These trace gas scavengers are the major biological sinks in the global methane and hydrogen cycles. This project aims to study entire ecosystems of trace gas scavengers, which could enhance understanding of soil microbial ecology and biogeochemical cycling. By studying the regulation and distribution of gas scavenging, we can better model how these sinks respond to global change.Read moreRead less
Discovery Early Career Researcher Award - Grant ID: DE230100700
Funder
Australian Research Council
Funding Amount
$429,449.00
Summary
A novel bacterial secretion system for applications in nanobiotechnology. This project aims to characterise a new molecular machine, called the S-Pump. Molecular machines drive the complex biology in all cells and are an exciting area of translational research, with broad potential for industrial applications. This project expects to provide fundamental insights into how bacterial S-Pumps contribute to antimicrobial resistance and enhancing food production. Expected outcomes include new tools fo ....A novel bacterial secretion system for applications in nanobiotechnology. This project aims to characterise a new molecular machine, called the S-Pump. Molecular machines drive the complex biology in all cells and are an exciting area of translational research, with broad potential for industrial applications. This project expects to provide fundamental insights into how bacterial S-Pumps contribute to antimicrobial resistance and enhancing food production. Expected outcomes include new tools for molecular machine discovery and identification of ways to adapt molecular machines for biotechnological applications. This work should enhance Australia-UK ties through collaboration, provide benefits toward nanobiotechnology and economic benefits through more efficient food production.Read moreRead less
An interdisciplinary approach to host-pathogen interactions in infection. This project aims to understand the molecular and cellular interactions between host and parasite, as well as providing a quantitative framework for analysing infection dynamics in other systems. Infection involves a complex interaction between the host and the parasite, which is very dynamic and therefore difficult to study by traditional sampling and analysis approaches. This project has combined mathematical modelling w ....An interdisciplinary approach to host-pathogen interactions in infection. This project aims to understand the molecular and cellular interactions between host and parasite, as well as providing a quantitative framework for analysing infection dynamics in other systems. Infection involves a complex interaction between the host and the parasite, which is very dynamic and therefore difficult to study by traditional sampling and analysis approaches. This project has combined mathematical modelling with a novel experimental protocol to allow the study of kinetics of parasite replication in vivo. Expected outcomes will provide significant benefits, such as new avenues for vaccination and immune intervention.Read moreRead less
Molecular characterisation of hypervirulence and the infectious cycle in Clostridium difficile. Gut diseases caused by the bacterium Clostridium difficile are a significant animal and public health problem in Australia and many other countries. This project will allow us to understand how this bacterium causes disease, leading to the development of much needed preventative and treatment strategies for animals and human patients.
Autotransporter assembly: new insights and biotechnological potential. The objective of this project is to improve our understanding of a fundamental biological problem: how autotransporters are assembled into cellular membranes. Autotransporters are a large family of bacterial proteins that play key roles in the pathogenesis of several infectious diseases. Currently, the precise mechanism by which disease-causing molecules are assembled into the outer membranes of bacteria and mitochondria is p ....Autotransporter assembly: new insights and biotechnological potential. The objective of this project is to improve our understanding of a fundamental biological problem: how autotransporters are assembled into cellular membranes. Autotransporters are a large family of bacterial proteins that play key roles in the pathogenesis of several infectious diseases. Currently, the precise mechanism by which disease-causing molecules are assembled into the outer membranes of bacteria and mitochondria is poorly understood. The knowledge that the project develops may inform future strategies aimed at the rational treatment of bacterial and mitochondrial diseases.Read moreRead less