Discovery Early Career Researcher Award - Grant ID: DE190100805
Funder
Australian Research Council
Funding Amount
$382,656.00
Summary
Phylogenetic methods for genome surveillance of microbial pathogens. This project aims to develop phylogenetic approaches to harness the potential evolution of bacterial and virus pathogens data and to improve early detection of infectious outbreaks. Genome surveillance programs consist in routine sequencing of particular organisms to track their evolution over time. Such programs currently exist for important bacterial and virus pathogens. This project expects to develop computational methods t ....Phylogenetic methods for genome surveillance of microbial pathogens. This project aims to develop phylogenetic approaches to harness the potential evolution of bacterial and virus pathogens data and to improve early detection of infectious outbreaks. Genome surveillance programs consist in routine sequencing of particular organisms to track their evolution over time. Such programs currently exist for important bacterial and virus pathogens. This project expects to develop computational methods to improve our understanding of pathogen outbreak emergence and infectious spread using genome data. This project will expand our knowledge base and research capability in the evolution and epidemiology of infectious agents, and aid in the prevention and control strategies of infectious disease benefiting the research priorities of food and health.Read moreRead less
Nowcasting outbreaks leveraging genomic and epidemiological data. This project aims to inform outbreak response planning by developing new models of infectious disease outbreaks. The project expects to generate new knowledge on the processes driving ongoing outbreaks including those of the novel coronavirus (COVID-19) and African swine fever by integrating the latest advances in Bayesian outbreak inference alongside unique simulation approaches. Expected outcomes should include a shift in how mo ....Nowcasting outbreaks leveraging genomic and epidemiological data. This project aims to inform outbreak response planning by developing new models of infectious disease outbreaks. The project expects to generate new knowledge on the processes driving ongoing outbreaks including those of the novel coronavirus (COVID-19) and African swine fever by integrating the latest advances in Bayesian outbreak inference alongside unique simulation approaches. Expected outcomes should include a shift in how models are developed and used to inform the response to outbreaks as they unfold. This should enable more rapid outbreak containment in Australia and overseas, leading to reduced impacts on public and animal health, and associated industries.Read moreRead less
A new universal mechanism controlling body proportions in animals. This project aims to establish that a recently-discovered mechanism, the inhibitory cascade, determines the basic proportions of appendages and body segments in a diverse range of animal groups, particularly vertebrates and arthropods. The goals of the project are to reveal the molecular mechanisms in mice and insects, and build computer simulations to show how to manipulate the control of development by the inhibitory cascade. T ....A new universal mechanism controlling body proportions in animals. This project aims to establish that a recently-discovered mechanism, the inhibitory cascade, determines the basic proportions of appendages and body segments in a diverse range of animal groups, particularly vertebrates and arthropods. The goals of the project are to reveal the molecular mechanisms in mice and insects, and build computer simulations to show how to manipulate the control of development by the inhibitory cascade. The project should benefit bioengineering by establishing control mechanisms for the manipulation and regeneration of teeth and limbs.Read moreRead less
Continuous tooth replacement in mammals: revealing the fundamental processes in tooth generation and movement. This project will investigate how molar teeth are made in mammals by examining the nabarlek, or little rock-wallaby, which is one of a handful of mammals that is able to regenerate new molars throughout its life. These new teeth migrate through the bone in order to move into the correct position in the mouth. By investigating two well-studied organisms, the mouse and the tammar wallaby, ....Continuous tooth replacement in mammals: revealing the fundamental processes in tooth generation and movement. This project will investigate how molar teeth are made in mammals by examining the nabarlek, or little rock-wallaby, which is one of a handful of mammals that is able to regenerate new molars throughout its life. These new teeth migrate through the bone in order to move into the correct position in the mouth. By investigating two well-studied organisms, the mouse and the tammar wallaby, as well as the nabarlek itself, the developmental processes and genes involved in molar generation and movement will be revealed. This project will integrate findings in regenerative medicine, evolutionary biology, materials engineering and palaeontology to reveal the mechanisms and origins of this astounding capability.Read moreRead less
Unravelling the role of heteroplasmy in mitochondrial adaptation. This project aims to unravel the evolutionary implications of heteroplasmy – a scenario in which multiple mitochondrial DNA genotypes exist in one individual. Recent studies indicate heteroplasmy is widespread, and can be caused by paternal transmission of mtDNA. But the effects of heteroplasmy on evolutionary processes remain unknown. Leveraging state-of-the-art methods, this project expects to generate new knowledge in the areas ....Unravelling the role of heteroplasmy in mitochondrial adaptation. This project aims to unravel the evolutionary implications of heteroplasmy – a scenario in which multiple mitochondrial DNA genotypes exist in one individual. Recent studies indicate heteroplasmy is widespread, and can be caused by paternal transmission of mtDNA. But the effects of heteroplasmy on evolutionary processes remain unknown. Leveraging state-of-the-art methods, this project expects to generate new knowledge in the areas of evolutionary ecology and mitochondrial genetics. Expected outcomes include discoveries that advance understanding of fundamental biological processes, and student training. Expected benefits include strengthening of Australia’s research capacity, by setting the research agenda in this rapidly developing field.Read moreRead less
Evolutionary limits. This project aims to understand the processes that limit adaptation to rapid environmental change. Adaption to rapid environmental change determines population persistence. Species with restricted distributions may lack the genetic variation necessary to adapt to changing environments, although they represent the vast majority of biodiversity. Understanding why they lack the necessary genetic variation for adaptation is important for identifying and managing vulnerable biolo ....Evolutionary limits. This project aims to understand the processes that limit adaptation to rapid environmental change. Adaption to rapid environmental change determines population persistence. Species with restricted distributions may lack the genetic variation necessary to adapt to changing environments, although they represent the vast majority of biodiversity. Understanding why they lack the necessary genetic variation for adaptation is important for identifying and managing vulnerable biological systems. This project will empirically determine the contribution of mutations to key traits to better understand what limits evolutionary adaptation. Better prediction of extinction risk should inform conservation and biodiversity management.Read moreRead less
Adaptation by DNA download: Experimental evolution of a pangenome. This project aims to understand how microbes adapt when they can directly “download" new genes from their surrounding environment, or from other types of bacteria. Specifically, the proposed research will carry out the largest-scale measurements of the fitness effects of horizontally transferred genetic variation, to discover how each of these genes interacts with the environment, and with other genes. This project is expected to ....Adaptation by DNA download: Experimental evolution of a pangenome. This project aims to understand how microbes adapt when they can directly “download" new genes from their surrounding environment, or from other types of bacteria. Specifically, the proposed research will carry out the largest-scale measurements of the fitness effects of horizontally transferred genetic variation, to discover how each of these genes interacts with the environment, and with other genes. This project is expected to generate new knowledge in the fields of microbial evolution and microbiome science. The benefits of this cutting-edge research will be to strengthen Australia’s research capacity in these rapidly developing fields and to train a new generation of interdisciplinary scientists.Read moreRead less
Integrating evolution and plasticity into predictions of population persistence in a changing climate: adaptation or extinction? To effectively manage biodiversity at a time of rapid environmental change, Australia needs accurate predictions of how human alterations to climate and habitat will affect species. This project integrates evolution and spatial ecology to develop new tools for predicting and understanding how species will respond to environmental change.
Discovery Early Career Researcher Award - Grant ID: DE190100831
Funder
Australian Research Council
Funding Amount
$416,670.00
Summary
The effects of mitochondrial genetic variation on physiology and behaviour. This project aims to test how mitochondrial DNA variation drives molecular, physiological, and behavioural differences between genders and among populations. This project, through the testing of a new hypothesis, expects to generate new knowledge to understand why males and females differ consistently in key health-related traits like longevity. The expected outcomes of this project will provide new discoveries that deli ....The effects of mitochondrial genetic variation on physiology and behaviour. This project aims to test how mitochondrial DNA variation drives molecular, physiological, and behavioural differences between genders and among populations. This project, through the testing of a new hypothesis, expects to generate new knowledge to understand why males and females differ consistently in key health-related traits like longevity. The expected outcomes of this project will provide new discoveries that deliver fundamental insights into the genetics of gender differences, with benefits that extend into the biomedical sciences. The project is also expected to enhance the international profile of Australian science through cutting-edge research in evolutionary genetics.Read moreRead less
Evolution of the dermomyotome in vertebrates. The project seeks to understand how different muscle populations within the embryo form and have evolved within the vertebrate phylogeny. All amniote muscles, except that of the head, derive from a transient embryonic structure termed the dermomyotome. The formation of muscle from the dermomyotome of amniotes uses a highly conserved mechanism that is distinct from that deployed by bony fish and amphibians. How the dermomyotome evolved to generate th ....Evolution of the dermomyotome in vertebrates. The project seeks to understand how different muscle populations within the embryo form and have evolved within the vertebrate phylogeny. All amniote muscles, except that of the head, derive from a transient embryonic structure termed the dermomyotome. The formation of muscle from the dermomyotome of amniotes uses a highly conserved mechanism that is distinct from that deployed by bony fish and amphibians. How the dermomyotome evolved to generate the distinct types of locomotor systems we see deployed throughout the vertebrate phylogeny remains unresolved. This project aims to contribute to an understanding of how different locomotor strategies deployed at important evolutionary transitions were generated.Read moreRead less