Discovery Early Career Researcher Award - Grant ID: DE120101954
Funder
Australian Research Council
Funding Amount
$375,000.00
Summary
Discovering Trans-New Guinea: revealing the prehistory of New Guinea. The third largest language family in the world is Trans-New Guinea spoken throughout New Guinea. The origins of this family are unknown. This project will uncover the history of these peoples by applying computational phylogenetic methods to data from these languages, leading to a deeper understanding of human prehistory in the Pacific.
The evolution of light detection and its impacts on early vertebrate evolution. The eye is a complex organ crucial for survival. Tracing the evolution of the eye will not only provide basic concepts of how building visual complexity is achieved in nature but also enhance the understanding of the selection pressures driving the radiation of early vertebrates.
Efficient phylogenetic methods that manage the curse of genomic complexity. This project aims to develop new methods and software to infer the evolutionary history of organisms using genomic data. These new phylogenomic methods need to take account of the complexity of evolutionary processes and/or patterns in time (along the evolutionary tree) and space (along the genome). This project is significant because these methods must merge mathematics and statistics with High-Performance Computing to ....Efficient phylogenetic methods that manage the curse of genomic complexity. This project aims to develop new methods and software to infer the evolutionary history of organisms using genomic data. These new phylogenomic methods need to take account of the complexity of evolutionary processes and/or patterns in time (along the evolutionary tree) and space (along the genome). This project is significant because these methods must merge mathematics and statistics with High-Performance Computing to handle the huge quantities of genetic data and the complexity of evolution itself. An important expected outcome of this project will be the development and release of freely-available software that incorporates these new methods. This project expects to benefit scientists who need to infer phylogenies from genomic data. Read moreRead less
Discovery Early Career Researcher Award - Grant ID: DE140101675
Funder
Australian Research Council
Funding Amount
$395,220.00
Summary
Integrating Evolutionary History into Ecological Modeling. Ecological niche models are used across evolution, ecology and conservation to estimate species' environmental tolerances. However, these methods suffer from a near-universal assumption that may be flawed; that the species is the appropriate evolutionary grouping for study. This project will develop methods for using evolutionary information to improve estimates of species' environmental tolerances, and will demonstrate those methods in ....Integrating Evolutionary History into Ecological Modeling. Ecological niche models are used across evolution, ecology and conservation to estimate species' environmental tolerances. However, these methods suffer from a near-universal assumption that may be flawed; that the species is the appropriate evolutionary grouping for study. This project will develop methods for using evolutionary information to improve estimates of species' environmental tolerances, and will demonstrate those methods in simulation and empirical studies. This will significantly improve our understanding of evolutionary ecology and will also result in improved conservation outcomes, addressing the national priority of an environmentally sustainable Australia and the goal of responding to environmental change and variability.Read moreRead less
The evolution of specialised orchid pollination and its reversibility. This project aims to determine the changes in key floral volatile compounds underpinning pollination transitions, identify their molecular basis, and understand the ecological processes favouring reversals away from extreme specialisation. By focusing on pollination of sexually deceptive Australian orchids, this project would be the first to determine the molecular, chemical and behavioural basis of evolutionary reversals to ....The evolution of specialised orchid pollination and its reversibility. This project aims to determine the changes in key floral volatile compounds underpinning pollination transitions, identify their molecular basis, and understand the ecological processes favouring reversals away from extreme specialisation. By focusing on pollination of sexually deceptive Australian orchids, this project would be the first to determine the molecular, chemical and behavioural basis of evolutionary reversals to more generalised strategies in a group of plants facing high risk of pollinator extinction. The expected outcome, a mechanistic understanding of how pollination transitions occur, would be internationally ground-breaking, and provide crucial insights to protect this diverse but highly threatened group of plants.Read moreRead less
Evolving with sexually transmitted infections. This project aims to understand how sexually transmitted infections (STIs) affect the evolution of host mating systems. STIs threaten the health of most sexually-reproducing organisms. In evolutionary terms, their mode of transmission imposes distinct selection patterns on hosts. This project will use an Australian beetle and its sexually transmitted mite to investigate how STIs lead to evolutionary changes in host mating behaviour and explore the g ....Evolving with sexually transmitted infections. This project aims to understand how sexually transmitted infections (STIs) affect the evolution of host mating systems. STIs threaten the health of most sexually-reproducing organisms. In evolutionary terms, their mode of transmission imposes distinct selection patterns on hosts. This project will use an Australian beetle and its sexually transmitted mite to investigate how STIs lead to evolutionary changes in host mating behaviour and explore the genetic basis for STI resistance. This project is expected to affect the evolution of host mating biology and lead to sex-specific optimal levels of disease resistance, which can influence disease dynamics and host-disease coevolution.Read moreRead less
Discovery Early Career Researcher Award - Grant ID: DE150101773
Funder
Australian Research Council
Funding Amount
$369,536.00
Summary
Bayesian Hierarchical Model for Biogeography. Species Distribution Models (SDMs) are crucial tools for conservation and planning, but they assume that environmental variables (e.g. temperature) are the only controls on distributions, when historical factors, like dispersal limitation and phylogenetic niche conservatism, are also important. A Bayesian Hierarchical Model (BHM) will be constructed to jointly estimate dispersal history, niche evolution, and present-day SDMs for each species in a cla ....Bayesian Hierarchical Model for Biogeography. Species Distribution Models (SDMs) are crucial tools for conservation and planning, but they assume that environmental variables (e.g. temperature) are the only controls on distributions, when historical factors, like dispersal limitation and phylogenetic niche conservatism, are also important. A Bayesian Hierarchical Model (BHM) will be constructed to jointly estimate dispersal history, niche evolution, and present-day SDMs for each species in a clade. BHMs will be tested against traditional SDMs using Australian clades (e.g. frogs) and simulations. BHMs will advance scientific understanding of how species and biogeography coevolve and provide practical improvements in predictions for species that are rare, data-poor, or in changed climates.Read moreRead less
Discovery Early Career Researcher Award - Grant ID: DE190100544
Funder
Australian Research Council
Funding Amount
$344,682.00
Summary
The drivers of genome evolution and diversification in marsupials. This project aims to investigate the impact of the four basic forces of evolution, mutation, selection, neutral drift, and gene flow, on the genome. Genome-scale data have a signature of these forces and extracting it would greatly improve the quality of evolutionary models fit to the data, but the framework to identify the evolutionary forces has not been developed. This project will develop tests for assessing the impact of the ....The drivers of genome evolution and diversification in marsupials. This project aims to investigate the impact of the four basic forces of evolution, mutation, selection, neutral drift, and gene flow, on the genome. Genome-scale data have a signature of these forces and extracting it would greatly improve the quality of evolutionary models fit to the data, but the framework to identify the evolutionary forces has not been developed. This project will develop tests for assessing the impact of the primary evolutionary forces on the genome, and test these methods using simulations. The new framework of genomic analysis will be disseminated through an intuitive software package, and will be used to estimate with unprecedented confidence the history of diversification and genome evolution of marsupials.Read moreRead less
Conservation genomics of a critically endangered insect. This project aims to develop tools genotyping large animal genomes, focusing on the case of the Lord Howe Island stick insect, once thought to be extinct and now critically endangered. This project expects to generate molecular tools to monitor the genetic health the insect which has a large, complex and poorly understood genome. Expected outcomes include the development of a preservation and reintroduction strategy for the insect. This pr ....Conservation genomics of a critically endangered insect. This project aims to develop tools genotyping large animal genomes, focusing on the case of the Lord Howe Island stick insect, once thought to be extinct and now critically endangered. This project expects to generate molecular tools to monitor the genetic health the insect which has a large, complex and poorly understood genome. Expected outcomes include the development of a preservation and reintroduction strategy for the insect. This project will benefit ongoing conservation efforts, and is timely given the ongoing eradication of rats from Lord Howe Island where this species once lived. Read moreRead less
Unravelling the molecular diversity and evolution of centipede venoms. The project intends to improve understanding of venom evolution in centipedes. Venoms have emerged as a rich source of pharmacological tools with potential for development into therapeutics and bioinsecticides. However, venoms-based discovery has been limited by the narrow taxonomical range of animals studied, with many groups of venomous animals overlooked. One such group is centipedes, whose venoms contain diverse toxins th ....Unravelling the molecular diversity and evolution of centipede venoms. The project intends to improve understanding of venom evolution in centipedes. Venoms have emerged as a rich source of pharmacological tools with potential for development into therapeutics and bioinsecticides. However, venoms-based discovery has been limited by the narrow taxonomical range of animals studied, with many groups of venomous animals overlooked. One such group is centipedes, whose venoms contain diverse toxins that differ between taxa. This project aims to provide an insight into centipede venom evolution, and how it might be constrained by venom-gland morphology. This study seeks to contribute to our understanding of protein evolution and direct biodiscovery efforts around centipede venom.Read moreRead less