Identification of causal variants for complex traits. The aim of this project is to identify causal variants for complex traits in cattle and humans. Although most important traits in agriculture, medicine and evolution are complex traits, very few of the genetic variants affecting these traits are known and this undermines our understanding of how genetic variants affect a trait and practical uses of this knowledge. Huge datasets of individuals with genome sequence and phenotypes and new statis ....Identification of causal variants for complex traits. The aim of this project is to identify causal variants for complex traits in cattle and humans. Although most important traits in agriculture, medicine and evolution are complex traits, very few of the genetic variants affecting these traits are known and this undermines our understanding of how genetic variants affect a trait and practical uses of this knowledge. Huge datasets of individuals with genome sequence and phenotypes and new statistical methods provide the opportunity to close this gap. The outcome will be identification of many genomic variants causing variation in complex traits. This will benefit scientific understanding of complex traits and the ability to predict traits for individuals from their genome sequence.Read moreRead less
Discovery Early Career Researcher Award - Grant ID: DE220101210
Funder
Australian Research Council
Funding Amount
$451,634.00
Summary
Deciphering molecular genetic mechanisms underlying chromatin interactions. This project aims to generate the high confidence map of enhancer-promoter links in 61 tissues and cells through robust integration of novel machine learning tools with genomic and epigenomic datasets. Understanding which key elements in the genome may be important to fine-tune gene expression is essential for understanding biological pathways. The expected outcomes include i) New tools to robustly identify true chromati ....Deciphering molecular genetic mechanisms underlying chromatin interactions. This project aims to generate the high confidence map of enhancer-promoter links in 61 tissues and cells through robust integration of novel machine learning tools with genomic and epigenomic datasets. Understanding which key elements in the genome may be important to fine-tune gene expression is essential for understanding biological pathways. The expected outcomes include i) New tools to robustly identify true chromatin pairs; ii) Comperehensive maps of regulatory interactomes in 61 tissues & cells, which will provide a roadmap for interpreting & prioritising noncoding variants.
This should provide significant benefit to Australia's capacity for cutting-edge genomics research through fundamental understanding of gene regulation mechanism.Read moreRead less
Resolving the Genetics of Grain Pigmentation Traits in Rice . New critical knowledge will enable future breeding of quality black rice cultivars that can exploit the high UV Australian growing environment to enable domestic production of high-value, healthy black rice. The demand for functional foods with health benefits, including black rice, is increasing both domestically and internationally. The concentration of key functional compounds in black rice may be increased by growing optimised cul ....Resolving the Genetics of Grain Pigmentation Traits in Rice . New critical knowledge will enable future breeding of quality black rice cultivars that can exploit the high UV Australian growing environment to enable domestic production of high-value, healthy black rice. The demand for functional foods with health benefits, including black rice, is increasing both domestically and internationally. The concentration of key functional compounds in black rice may be increased by growing optimised cultivars under high-UV radiation, making Australia well placed to produce the highest quality black rice. Utilising a unique genetic resource this project will resolve how the interaction between crop genetics and the growing environment drives the concentration of functional compounds in black rice. Read moreRead less
Characterising inheritance patterns of whole genome DNA methylation. This project aims to characterise epigenetic diversity and inheritance patterns in whole genome sequencing data from a unique human population. The project will employ the well-characterised Norfolk Island genetic isolate, cost-effective whole genome bisulphite sequencing technologies and advanced bioinformatics pipelines and statistical models. It will involve cross-discipline collaboration between human geneticists, epigeneti ....Characterising inheritance patterns of whole genome DNA methylation. This project aims to characterise epigenetic diversity and inheritance patterns in whole genome sequencing data from a unique human population. The project will employ the well-characterised Norfolk Island genetic isolate, cost-effective whole genome bisulphite sequencing technologies and advanced bioinformatics pipelines and statistical models. It will involve cross-discipline collaboration between human geneticists, epigeneticists, statistical geneticists and bioinformaticians. This project will advance our understanding of the interaction of genetics and epigenetics and their relationship to diversity and inheritance in humans.Read moreRead less
Pedalling for change: cultural geography for traffic congestion innovation. This project aims to offer new knowledge about why commuter cycling has failed to increase at a time when leisure cycling grows exponentially. The project seeks to provide evidence about what cycling enables people to achieve through analysis of a database of media discourses, policies and most importantly the experiences of cyclists. Expected outcomes include an enhanced understanding of cycling as response to congestio ....Pedalling for change: cultural geography for traffic congestion innovation. This project aims to offer new knowledge about why commuter cycling has failed to increase at a time when leisure cycling grows exponentially. The project seeks to provide evidence about what cycling enables people to achieve through analysis of a database of media discourses, policies and most importantly the experiences of cyclists. Expected outcomes include an enhanced understanding of cycling as response to congestion and improved policy strategies for increasing purposeful cycling in cities including moving the focus from cycling participation rates to cultures of cycling. Australia will benefit from cycling growing as a mode of transport to attenuate traffic congestion in metropolitan centres.Read moreRead less
Integrated Futures for the use of Motorised Mobility Devices. People using Motorised Mobility Devices (MMDs) face increased regulation. A pessimism exists about the future of MMDs because of the lack of evidence and explanation of MMD use in transport decision making. This project aims to fundamentally change knowledge about the everyday meanings and experiences of MMDs. The project seeks to provide comparative, trustworthy and in-depth baseline empirical data about how people who are reliant u ....Integrated Futures for the use of Motorised Mobility Devices. People using Motorised Mobility Devices (MMDs) face increased regulation. A pessimism exists about the future of MMDs because of the lack of evidence and explanation of MMD use in transport decision making. This project aims to fundamentally change knowledge about the everyday meanings and experiences of MMDs. The project seeks to provide comparative, trustworthy and in-depth baseline empirical data about how people who are reliant upon MMDs negotiate the current transport infrastructure. Expected outcomes with our Partner Organisation, Assistive Technology Services Australia, include a database of deliberative strategies. This project will benefit Australia’s urban and regional communities through a better understanding of transport. Read moreRead less
Understanding contested human-plant geographies for urban greening success. Urban greening is vital for sustainable, liveable and climate-adapted cities. However, conflicts over urban greening continue to cause delays and even failure of initiatives. Such disputes, and the diverse socio-cultural relations that drive them, remain poorly understood. In ground-breaking research employing innovative concepts and methods developed by the team, this project aims to generate new knowledge about how peo ....Understanding contested human-plant geographies for urban greening success. Urban greening is vital for sustainable, liveable and climate-adapted cities. However, conflicts over urban greening continue to cause delays and even failure of initiatives. Such disputes, and the diverse socio-cultural relations that drive them, remain poorly understood. In ground-breaking research employing innovative concepts and methods developed by the team, this project aims to generate new knowledge about how people experience urban greening in their everyday lives and how urban greening is contested in three Australian cities. Expected outcomes include new, crucial understandings of key human-plant relationships, facilitated international collaborations, and significant findings for improving urban greening policies and governance.Read moreRead less
High-value horticulture and global production networks in coastal Australia. High-value horticulture is booming in Australia’s north-eastern coastal strip, where a multifunctional landscape also provides various recreational, cultural and environmental services. This project aims analyses how incorporation within agricultural global production networks interacts with diverse drivers of landscape change to shape regional development outcomes. This will contribute to global production network theo ....High-value horticulture and global production networks in coastal Australia. High-value horticulture is booming in Australia’s north-eastern coastal strip, where a multifunctional landscape also provides various recreational, cultural and environmental services. This project aims analyses how incorporation within agricultural global production networks interacts with diverse drivers of landscape change to shape regional development outcomes. This will contribute to global production network theory by developing the territorial nexus of these networks. Expected outcomes include improved policy formulations capable of orchestrating a sustainable and equitable future for rural regions and livelihoods within Australia, with broader contributions to understanding rural development pathways elsewhere in the world.Read moreRead less
Industrial Transformation Training Centres - Grant ID: IC170100016
Funder
Australian Research Council
Funding Amount
$3,123,492.00
Summary
ARC Training Centre for Personalised Therapeutics Technologies. The ARC Training Centre for Personalised Therapeutics Technologies aims to create and develop the skills and technology to benefit from the transformative impacts that cell/organ-on-a-chip technology will have on the medtech/pharma industries. By combining microfluidics-based/real-time technologies with personalised medicine the Training Centre will provide industry growth opportunities through improved screening of potential therap ....ARC Training Centre for Personalised Therapeutics Technologies. The ARC Training Centre for Personalised Therapeutics Technologies aims to create and develop the skills and technology to benefit from the transformative impacts that cell/organ-on-a-chip technology will have on the medtech/pharma industries. By combining microfluidics-based/real-time technologies with personalised medicine the Training Centre will provide industry growth opportunities through improved screening of potential therapeutics. The use of an individual patient’s cellular and molecular research findings will ultimately enable personalised diagnostic and therapeutic decisions.Read moreRead less
Ethical and Social Issues in Translating Epigenetics into Antenatal Care. This project aims to investigate how knowledge about the intergenerational transmission of health and disease is shaping antenatal care in Australia. It expects to generate new knowledge about how the science of epigenetics can be used to address social inequality and is anticipated to have impact across the social sciences, bioethics and public health. Expected outcomes of the project include novel theoretical approaches ....Ethical and Social Issues in Translating Epigenetics into Antenatal Care. This project aims to investigate how knowledge about the intergenerational transmission of health and disease is shaping antenatal care in Australia. It expects to generate new knowledge about how the science of epigenetics can be used to address social inequality and is anticipated to have impact across the social sciences, bioethics and public health. Expected outcomes of the project include novel theoretical approaches to the ethics of pregnancy, along with guidance tools to shape the use of epigenetics in antenatal care and social policy to reduce social inequalities. This should provide significant benefits, improving information and support available to vulnerable women as they negotiate maternal health and social services. Read moreRead less