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Discovery Early Career Researcher Award - Grant ID: DE220101226
Funder
Australian Research Council
Funding Amount
$423,000.00
Summary
Testing Effects of Environmental Exposures on Subsequent Human Generations. This project aims to develop new statistical models to determine how environmental exposures in pregnancy, such as smoking, alcohol consumption and diet, can impact the first and second generations of children. The project will fill a void in unbiased tools to disentangle genetic and environmental components in the inheritance of complex traits, and will be the first to determine objectively if and how effects from envir ....Testing Effects of Environmental Exposures on Subsequent Human Generations. This project aims to develop new statistical models to determine how environmental exposures in pregnancy, such as smoking, alcohol consumption and diet, can impact the first and second generations of children. The project will fill a void in unbiased tools to disentangle genetic and environmental components in the inheritance of complex traits, and will be the first to determine objectively if and how effects from environmental exposures can be inherited. Through international collaborations and advanced interdisciplinary approaches, this project will generate new knowledge in the emerging field of multigenerational inheritance to drive the future design of interventions and influence positive behaviours during pregnancy.Read moreRead less
Discovery Early Career Researcher Award - Grant ID: DE200100425
Funder
Australian Research Council
Funding Amount
$409,364.00
Summary
Genetic and Molecular Consequences of Non-Random Mating in Humans. This project aims to develop and apply novel statistical methods to quantify the effects on a large number of complex traits of two forms of non-random mating in humans, that is inbreeding and assortative mating. The innovation in this proposal lies in integrating multi-level phenotypes with next-generation sequencing data collected in more than half a million study participants. Expected outcomes of this research include advance ....Genetic and Molecular Consequences of Non-Random Mating in Humans. This project aims to develop and apply novel statistical methods to quantify the effects on a large number of complex traits of two forms of non-random mating in humans, that is inbreeding and assortative mating. The innovation in this proposal lies in integrating multi-level phenotypes with next-generation sequencing data collected in more than half a million study participants. Expected outcomes of this research include advanced analytical methods to perform this integration and dissection of the biological consequences of non-random mating in humans at an unprecedented phenotypically detailed scale. The benefit of this project will be to identify new drivers of mate choice that can contribute to economic, health and social inequalities. Read moreRead less
Discovery Early Career Researcher Award - Grant ID: DE230100085
Funder
Australian Research Council
Funding Amount
$440,954.00
Summary
Forensic genomic toolkit for tracking the illegal wildlife trade. This project aims to analyse the illegal parrot trade by utilising conservation genomic approaches. The project will reveal wildlife trade routes in South-east Asia by developing cutting-edge forensic genomic techniques and criminological methods. Expected outcomes of this project include new field-deployable sequencing technology to provide in-situ genetic information for identifying the taxonomy and provenance of confiscated spe ....Forensic genomic toolkit for tracking the illegal wildlife trade. This project aims to analyse the illegal parrot trade by utilising conservation genomic approaches. The project will reveal wildlife trade routes in South-east Asia by developing cutting-edge forensic genomic techniques and criminological methods. Expected outcomes of this project include new field-deployable sequencing technology to provide in-situ genetic information for identifying the taxonomy and provenance of confiscated specimens, and a first ever genetic database of traded wildlife. The project will facilitate important countermeasures to the illegal wildlife trade including confiscation, reintroduction, improved law enforcement, and education for better biodiversity outcomes in our region.Read moreRead less
Discovery Early Career Researcher Award - Grant ID: DE240100388
Funder
Australian Research Council
Funding Amount
$437,977.00
Summary
Ecological and phylogenomic insights into infectious diseases in animals. This project aims to address major knowledge gaps in our understanding of Clostridium difficile, a leading cause of severe gastrointestinal disease in animals. The project is expected to define the epidemiology of C. difficile infection in Australian horses, characterise the genetic and phenotypic traits of C. difficile strains causing equine disease and develop a new tool for enhanced genomic tracking of C. difficile in a ....Ecological and phylogenomic insights into infectious diseases in animals. This project aims to address major knowledge gaps in our understanding of Clostridium difficile, a leading cause of severe gastrointestinal disease in animals. The project is expected to define the epidemiology of C. difficile infection in Australian horses, characterise the genetic and phenotypic traits of C. difficile strains causing equine disease and develop a new tool for enhanced genomic tracking of C. difficile in animals. These outcomes will support strategies by the veterinary sector to improve the detection, prevention and control of C. difficile infections in animals, providing long-term socio-economic benefits arising from reduced incidence and mortality associated with C. difficile infections in Australian horses and livestock.Read moreRead less
Discovery Early Career Researcher Award - Grant ID: DE230100730
Funder
Australian Research Council
Funding Amount
$448,000.00
Summary
Strategies to minimise the societal impacts of zoonotic pandemics. The continuing pandemic has had unprecedented effects across society. Population mobility restrictions have been effective in slowing transmission, but are only effective while in place and have dramatic adverse effects. Despite Australia’s relative success, we have lacked a clear national strategy to guide the optimal deployment of such restrictions. During this fellowship, I will use robust software development practices to dev ....Strategies to minimise the societal impacts of zoonotic pandemics. The continuing pandemic has had unprecedented effects across society. Population mobility restrictions have been effective in slowing transmission, but are only effective while in place and have dramatic adverse effects. Despite Australia’s relative success, we have lacked a clear national strategy to guide the optimal deployment of such restrictions. During this fellowship, I will use robust software development practices to develop a unified software platform that integrates semi-mechanistic, particle filter and agent-based methodologies. I will then use this platform to quantify the effects of mobility restrictions and define the optimal strategic response that should be selected based on the characteristics of a newly emerged pathogen.Read moreRead less
Discovery Early Career Researcher Award - Grant ID: DE200100977
Funder
Australian Research Council
Funding Amount
$419,016.00
Summary
How ecology shapes the viromes of wild birds. This project will reveal the host factors associated with the diversity, evolution and dynamics of viruses using state-of-the-art metatranscriptomics in Australian wild birds. The structure of virus communities and their associated ecological drivers in wild animal hosts remain a black-box, even though they are the largest source of viral diversity in nature. This project expects to generate key insights into host-associated drivers of viral communit ....How ecology shapes the viromes of wild birds. This project will reveal the host factors associated with the diversity, evolution and dynamics of viruses using state-of-the-art metatranscriptomics in Australian wild birds. The structure of virus communities and their associated ecological drivers in wild animal hosts remain a black-box, even though they are the largest source of viral diversity in nature. This project expects to generate key insights into host-associated drivers of viral community dynamics and the subsequent effect of anthropogenic factors such as urbanisation and poultry production. Identifying host factors that affect viral ecology in wild birds will constitute a cornerstone in understanding the emergence of virulent viruses and/or their spread to poultry or humansRead moreRead less
Discovery Early Career Researcher Award - Grant ID: DE190100710
Funder
Australian Research Council
Funding Amount
$422,492.00
Summary
Beyond Hendra: the significance of viral communities in bat virus spillover. This project aims to address the emerging global health threat posed by zoonotic bat-borne viruses, by determining why bats shed multiple viruses in synchronised pulses. The project expects to identify universal drivers of multi-viral shedding pulses, using Hendra virus as a model system for other bat viruses in Australia and globally. Expected outcomes include insights into the interactions between environmental change ....Beyond Hendra: the significance of viral communities in bat virus spillover. This project aims to address the emerging global health threat posed by zoonotic bat-borne viruses, by determining why bats shed multiple viruses in synchronised pulses. The project expects to identify universal drivers of multi-viral shedding pulses, using Hendra virus as a model system for other bat viruses in Australia and globally. Expected outcomes include insights into the interactions between environmental change, bat ecology, viral dynamics and spillover, prediction of when and where bat viral shedding will most likely occur, and development of new ecological interventions to prevent bat virus spillover in Australia and globally. This will provide significant benefits by pre-empting spillover and global pandemics before they occur.Read moreRead less
Discovery Early Career Researcher Award - Grant ID: DE220101210
Funder
Australian Research Council
Funding Amount
$451,634.00
Summary
Deciphering molecular genetic mechanisms underlying chromatin interactions. This project aims to generate the high confidence map of enhancer-promoter links in 61 tissues and cells through robust integration of novel machine learning tools with genomic and epigenomic datasets. Understanding which key elements in the genome may be important to fine-tune gene expression is essential for understanding biological pathways. The expected outcomes include i) New tools to robustly identify true chromati ....Deciphering molecular genetic mechanisms underlying chromatin interactions. This project aims to generate the high confidence map of enhancer-promoter links in 61 tissues and cells through robust integration of novel machine learning tools with genomic and epigenomic datasets. Understanding which key elements in the genome may be important to fine-tune gene expression is essential for understanding biological pathways. The expected outcomes include i) New tools to robustly identify true chromatin pairs; ii) Comperehensive maps of regulatory interactomes in 61 tissues & cells, which will provide a roadmap for interpreting & prioritising noncoding variants.
This should provide significant benefit to Australia's capacity for cutting-edge genomics research through fundamental understanding of gene regulation mechanism.Read moreRead less
Discovery Early Career Researcher Award - Grant ID: DE210100549
Funder
Australian Research Council
Funding Amount
$417,328.00
Summary
Adaptive evolution and its demographic consequences today. This project aims to provide the first test of whether the rate of adaptative genetic evolution has changed in the recent decades, to quantify how much recent genetic evolution helps animal populations survive, and to increase the ability to study on-going genetic evolution in Australian wildlife. The project is of major significance as many species are currently threatened, or invading, due to rapid environmental changes, in particular ....Adaptive evolution and its demographic consequences today. This project aims to provide the first test of whether the rate of adaptative genetic evolution has changed in the recent decades, to quantify how much recent genetic evolution helps animal populations survive, and to increase the ability to study on-going genetic evolution in Australian wildlife. The project is of major significance as many species are currently threatened, or invading, due to rapid environmental changes, in particular climate change. The anticipated outcome of the project is to deliver new methods, establish a network of international and national collaborators and improve the ability to measure and to forecast how Australian animals adapt to rapidly changing environments.Read moreRead less