Quantifying and mitigating the barrier effect of roads on the movement and dispersal of wildlife. In fragmented landscapes, wildlife need to move between habitat patches to exchange genes, increase the size of declining populations and recolonise areas were animals have become extinct. For many species, roads may act as barriers that prevent or limit dispersal, potentially isolating some habitats. In this study, we aim to quantify the extent to which major highways in regional Australia form a ....Quantifying and mitigating the barrier effect of roads on the movement and dispersal of wildlife. In fragmented landscapes, wildlife need to move between habitat patches to exchange genes, increase the size of declining populations and recolonise areas were animals have become extinct. For many species, roads may act as barriers that prevent or limit dispersal, potentially isolating some habitats. In this study, we aim to quantify the extent to which major highways in regional Australia form a barrier to the movement of mammals and invertebrates. We will then test the effectiveness of measures that may facilitate safe crossing by measuring their rate of use, reduction in road kill and increase in population viability. This information can then be used to construct major roads that are more environmentally sustainable.Read moreRead less
Landscape level effects on dispersal behaviour and gene flow in the logrunner, a rainforest restricted bird. Dispersal is thought to be critical for the persistence of small avian populations in fragmented landscapes. However, our knowledge of dispersal is limited. I will combine behavioural observations on radiotagged birds and powerful genetic markers to examine the effects of habitat fragmentation on the dispersal behaviour of a rainforest restricted bird, the logrunner. This study will deter ....Landscape level effects on dispersal behaviour and gene flow in the logrunner, a rainforest restricted bird. Dispersal is thought to be critical for the persistence of small avian populations in fragmented landscapes. However, our knowledge of dispersal is limited. I will combine behavioural observations on radiotagged birds and powerful genetic markers to examine the effects of habitat fragmentation on the dispersal behaviour of a rainforest restricted bird, the logrunner. This study will determine how landscape structure influences the movement of juvenile logrunners, investigate the causes and consequences of variation in juvenile dispersal behaviour, and use molecular data to determine how connectivity between habitats effects the genetic structure of logrunner populations.Read moreRead less
A Bayesian framework for metapopulation dynamics of species in endangered communities: integrating demographic, environmental and genetic data. Biodiversity conservation is a spatial and temporal problem. Populations change in time, constrained by the structure and spatial division of their habitat. This study will develop a tool that can be used to assess the influence of environmental fluctuations and landscape heterogeneity on the persistence of endemic species in the mound springs of the Gr ....A Bayesian framework for metapopulation dynamics of species in endangered communities: integrating demographic, environmental and genetic data. Biodiversity conservation is a spatial and temporal problem. Populations change in time, constrained by the structure and spatial division of their habitat. This study will develop a tool that can be used to assess the influence of environmental fluctuations and landscape heterogeneity on the persistence of endemic species in the mound springs of the Great Artesian Basin. Using a Bayesian framework to integrate data from diverse sources, we will develop models for the biodiversity impacts of groundwater withdrawal and climate change in central Australia. These tools are essential for management of this ecosystem, which has been listed as an 'endangered community' under the Environmental Protection and Biodiversity Conservation Act of 1999.Read moreRead less
The biology and epidemiology of the grapevine canker fungi, Botryosphaeria sp. Decline and dieback of grapevines is becoming an increasing problem for the viticulture industry in NSW. Recently, species of the fungus Botryosphaeria, were isolated from grapevines exhibiting these symptoms. In order to understand the biology and epidemiology of the causal organisms, we aim to; (i) determine species of Botryosphaeria present in NSW vineyards; (ii) determine which species are pathogenic on grapevines ....The biology and epidemiology of the grapevine canker fungi, Botryosphaeria sp. Decline and dieback of grapevines is becoming an increasing problem for the viticulture industry in NSW. Recently, species of the fungus Botryosphaeria, were isolated from grapevines exhibiting these symptoms. In order to understand the biology and epidemiology of the causal organisms, we aim to; (i) determine species of Botryosphaeria present in NSW vineyards; (ii) determine which species are pathogenic on grapevines; (iii) characterise the genetic diversity of strains and; (iv) screen fungicides for the control of these fungi. Information on the species, their biology and pathogenicity on grapevines, will enable the development of appropriate management strategies for its control and may lead to the development of molecular tools to identify species of Botryosphaeria.Read moreRead less
Devising ecologically sustainable restoration programs for degraded rural landscapes by integrating landscape ecology, genetics and ecophysiology. Concern about tree decline in rural landscape is widespread, and disturbingly climate change is predicted to exacerbate this problem. Past ill-considered tree plantings have proven to be economically wasteful, achieved limited ecological resilience and negligible improvement of biodiversity values. Using Tasmania as a 'model system', we will advance t ....Devising ecologically sustainable restoration programs for degraded rural landscapes by integrating landscape ecology, genetics and ecophysiology. Concern about tree decline in rural landscape is widespread, and disturbingly climate change is predicted to exacerbate this problem. Past ill-considered tree plantings have proven to be economically wasteful, achieved limited ecological resilience and negligible improvement of biodiversity values. Using Tasmania as a 'model system', we will advance this problem by undertaking research to determine how seedling establishment, tree growth, carbon storage and water use are influenced by landscape setting, management history, climate change, species type and local varieties. This research will provide a much needed evidence to devise ecologically sustainable tree-plantings in southern Australia.Read moreRead less
Identifying genes causing thermal evolution of ectotherm body size. Cold-blooded animals increase in body size as they are found in populations at greater distances from the equator. These patterns are due to populations adapting to temperature. The aim of this project is to identify the genes involved in this adaptation process. We will do this by taking advantage of a well-studied body size cline in the vinegar fly on the east coast of Australia, and by building on an international collaborati ....Identifying genes causing thermal evolution of ectotherm body size. Cold-blooded animals increase in body size as they are found in populations at greater distances from the equator. These patterns are due to populations adapting to temperature. The aim of this project is to identify the genes involved in this adaptation process. We will do this by taking advantage of a well-studied body size cline in the vinegar fly on the east coast of Australia, and by building on an international collaboration between a leading UK and two Australian research groups. In doing so we will provide an explanation at the molecular level for one of the great unresolved phenomena in biology: why do cold-blooded animals get bigger in the cold? The research also leads to the potential to manipulate body size in animals.Read moreRead less
A Genomic Dissection of Natural Adaptation in Mate Recognition. Adaptation is a fundamental area of evolutionary biology but we know surprisingly little about its underlying genetic basis. As a process, adaptation poses several challenges for Australian society including bacterial evolution of resistance to antibiotics, HIV resistance to antiviral medications and the evolution of pesticide resistance in agricultural pests. This study will use a model system and genomic tools to test theoretical ....A Genomic Dissection of Natural Adaptation in Mate Recognition. Adaptation is a fundamental area of evolutionary biology but we know surprisingly little about its underlying genetic basis. As a process, adaptation poses several challenges for Australian society including bacterial evolution of resistance to antibiotics, HIV resistance to antiviral medications and the evolution of pesticide resistance in agricultural pests. This study will use a model system and genomic tools to test theoretical models of the genetic basis of adaptation. This integrative approach will enhance Australia's research profile in genomics and evolutionary biology. The project will provide emerging scientists with skills in areas including genomics, molecular biology, evolutionary biology and agricultural genetics.Read moreRead less
Maximising knowledge from dense SNP (single nucleotide polymorphisms) data using multi-locus analysis. The genomics revolution has made it possible to measure thousands of DNA variants in individuals. This information can be used in many ways, including to find genes that cause variation between individuals in a population and to estimate the size of the population in the past. Our study will lead an analysis method that will extract more information out of such data. This will improve the effi ....Maximising knowledge from dense SNP (single nucleotide polymorphisms) data using multi-locus analysis. The genomics revolution has made it possible to measure thousands of DNA variants in individuals. This information can be used in many ways, including to find genes that cause variation between individuals in a population and to estimate the size of the population in the past. Our study will lead an analysis method that will extract more information out of such data. This will improve the efficiency of gene mapping methods, including applications in humans for traits related to productive ageing and a healthy start to life, will allow the estimation of genetic relatedness and genetic variation in natural populations, and will lead to more efficient selection programs in agricultural populations.Read moreRead less
Genetic architecture of species divergence and hybridisation in eucalypts. Eucalypts are an icon of Australia and are of great economic and ecological significance to the nation. They are the most widely planted hardwood trees in the world, but Australia is the centre of origin of most species and the custodian of this important native bioresource. Understanding the evolutionary processes that shape diversity in this internationally significant genus is important for its long-term management a ....Genetic architecture of species divergence and hybridisation in eucalypts. Eucalypts are an icon of Australia and are of great economic and ecological significance to the nation. They are the most widely planted hardwood trees in the world, but Australia is the centre of origin of most species and the custodian of this important native bioresource. Understanding the evolutionary processes that shape diversity in this internationally significant genus is important for its long-term management and conservation. This project links to large international initiatives currently underway for high-density mapping and sequencing of the eucalypt genome, to enhance the flow of information gained back to Australia for scientific, economic and environmental benefit.Read moreRead less
Patterns of connectivity and hot-spots of recruitment: a basis for prioritising high value coastal rivers. Provision of water for agricultural, industrial and residential use is becoming increasingly difficult in Australia. By determining the need for important migratory fish species to have access to marine conditions, this project aims to assist managers to identify river systems where changing flow patterns will be particularly detrimental. The project will provide information about the ne ....Patterns of connectivity and hot-spots of recruitment: a basis for prioritising high value coastal rivers. Provision of water for agricultural, industrial and residential use is becoming increasingly difficult in Australia. By determining the need for important migratory fish species to have access to marine conditions, this project aims to assist managers to identify river systems where changing flow patterns will be particularly detrimental. The project will provide information about the need for artificial opening of estuary mouths, fish ladders and other practical means to ensure the continued survival of these species. Read moreRead less