Uncovering vertebrate lifespan biodiversity with whole genome sequencing. This project aims to integrate existing data on the genetic mechanisms of lifespan evolution in model systems with a novel combination of whole genome sequencing and comparative phylogenomics to reveal the common genomic signatures of lifespan evolution in vertebrates. Expected outcomes include a perspective on the evolution of lifespan, a topic of major health interest for Australia and the rest of the developed world. Th ....Uncovering vertebrate lifespan biodiversity with whole genome sequencing. This project aims to integrate existing data on the genetic mechanisms of lifespan evolution in model systems with a novel combination of whole genome sequencing and comparative phylogenomics to reveal the common genomic signatures of lifespan evolution in vertebrates. Expected outcomes include a perspective on the evolution of lifespan, a topic of major health interest for Australia and the rest of the developed world. This will provide significant benefits, such as long-term implications for aging research, with possible business applications. It will also increase Australia’s visibility and competitiveness in the developing field of bioinformatics.Read moreRead less
Real-time phylogenetics for food-borne outbreak surveillance. The project aims to introduce, for the first time, real-time evolutionary analysis of agricultural pathogens so that outbreaks affecting crops and the food supply can be managed precisely and rapidly. An expert team will implement a large-scale data analytics framework in user-friendly software that integrates Australian infectious disease genomics data with global data. Underpinning this work are new theory and algorithms that apply ....Real-time phylogenetics for food-borne outbreak surveillance. The project aims to introduce, for the first time, real-time evolutionary analysis of agricultural pathogens so that outbreaks affecting crops and the food supply can be managed precisely and rapidly. An expert team will implement a large-scale data analytics framework in user-friendly software that integrates Australian infectious disease genomics data with global data. Underpinning this work are new theory and algorithms that apply Sequential Monte Carlo to update phylogenetic analyses continuously as new data arrives. Expected outcomes include new knowledge of statistical algorithms for evolutionary analysis, relevant to biological disciplines beyond infectious disease; and enhanced capacity for infectious disease analysis. Read moreRead less
Discovery Early Career Researcher Award - Grant ID: DE240100316
Funder
Australian Research Council
Funding Amount
$435,431.00
Summary
Population genomic methods for modelling bacterial pathogen evolution. This project aims to develop novel techniques to model bacterial genome evolution and improve our understanding of how major agricultural and human pathogens, including Enterococcus, Salmonella and E. coli, evolve. The project expects to generate new knowledge about how horizontal gene transfer shapes the evolution of bacteria and how these dynamics vary over different temporal scales. Expected outcomes include methodological ....Population genomic methods for modelling bacterial pathogen evolution. This project aims to develop novel techniques to model bacterial genome evolution and improve our understanding of how major agricultural and human pathogens, including Enterococcus, Salmonella and E. coli, evolve. The project expects to generate new knowledge about how horizontal gene transfer shapes the evolution of bacteria and how these dynamics vary over different temporal scales. Expected outcomes include methodological advances that will enable the analysis of massive contemporary datasets. These methods and resulting analyses will provide significant benefits including informing the design of superior long-term interventions to reduce bacterial disease in both agriculture and health that are robust to the evolution of bacteria.Read moreRead less
Discovery Early Career Researcher Award - Grant ID: DE150101904
Funder
Australian Research Council
Funding Amount
$385,481.00
Summary
Interactions of sexual selection & ecological divergence during speciation. Understanding the processes driving speciation is fundamental to understanding how biodiversity is generated. The two main forces underlying speciation, ecological divergence and sexual selection, are well characterised, yet how they interact during the speciation process is remarkably poorly understood. This project aims to test hypotheses regarding how ecological divergence and sexual selection interact during speciati ....Interactions of sexual selection & ecological divergence during speciation. Understanding the processes driving speciation is fundamental to understanding how biodiversity is generated. The two main forces underlying speciation, ecological divergence and sexual selection, are well characterised, yet how they interact during the speciation process is remarkably poorly understood. This project aims to test hypotheses regarding how ecological divergence and sexual selection interact during speciation, from its inception to its completion. In doing so, this research aims to identify genomic regions underlying divergence in colour patterns, which are important for ecological and sexual interactions. Consequently, this project will significantly enhance our understanding of ecological and genetic mechanisms underlying speciation.Read moreRead less
Cell death by self-eating: Autophagy-dependent tissue removal. This project aims to study the mechanisms and regulation of autophagy-dependent cell death. Cell death maintains cell and tissue homeostasis. Although most cell death is mediated by apoptosis, other modes of cell deletion have emerged recently. One form of cell death involves autophagy, the catabolic process of cellular self-digestion through lysosomal enzymes. As autophagy is a default mechanism of cell survival under stress, the id ....Cell death by self-eating: Autophagy-dependent tissue removal. This project aims to study the mechanisms and regulation of autophagy-dependent cell death. Cell death maintains cell and tissue homeostasis. Although most cell death is mediated by apoptosis, other modes of cell deletion have emerged recently. One form of cell death involves autophagy, the catabolic process of cellular self-digestion through lysosomal enzymes. As autophagy is a default mechanism of cell survival under stress, the idea of autophagy-dependent cell death has been controversial. This proposal aims to resolve this question and provide highly topical knowledge of broad biological significance.Read moreRead less
Identifying genes causing thermal evolution of ectotherm body size. Cold-blooded animals increase in body size as they are found in populations at greater distances from the equator. These patterns are due to populations adapting to temperature. The aim of this project is to identify the genes involved in this adaptation process. We will do this by taking advantage of a well-studied body size cline in the vinegar fly on the east coast of Australia, and by building on an international collaborati ....Identifying genes causing thermal evolution of ectotherm body size. Cold-blooded animals increase in body size as they are found in populations at greater distances from the equator. These patterns are due to populations adapting to temperature. The aim of this project is to identify the genes involved in this adaptation process. We will do this by taking advantage of a well-studied body size cline in the vinegar fly on the east coast of Australia, and by building on an international collaboration between a leading UK and two Australian research groups. In doing so we will provide an explanation at the molecular level for one of the great unresolved phenomena in biology: why do cold-blooded animals get bigger in the cold? The research also leads to the potential to manipulate body size in animals.Read moreRead less
Respectful encounters: Enhancing understanding and engagement between Western and Confucian-heritage educators. One in four students in Australian universities is an international student and Chinese students are the largest group. International education is our third largest export and contacts between Australian and Chinese universities are rapidly increasing. This, however, is often based on outmoded or stereotyped assumptions about scholarship and learning. This project on both sides will bu ....Respectful encounters: Enhancing understanding and engagement between Western and Confucian-heritage educators. One in four students in Australian universities is an international student and Chinese students are the largest group. International education is our third largest export and contacts between Australian and Chinese universities are rapidly increasing. This, however, is often based on outmoded or stereotyped assumptions about scholarship and learning. This project on both sides will build Australian educators' knowledge of complexities and contemporary developments within China's cultural and intellectual paradigms. It will thus increase the appeal and relevance of Australian education to Chinese students and academics, enhance our engagement with China, and improve the international reputation and competitiveness of our universities.Read moreRead less
Data-driven phylodynamics: molecular evolution to epidemiology. This project aims to uncover how different environmental and ecological variables drive the emergence of pathogens with increased transmissibility or virulence, known as variants. This will be achieved through extensive analyses of virus genome data.
This project expects to generate new knowledge in the field of pathogen evolution using novel data-driven statistical techniques for genomic analyses.
Expected outcomes of this proje ....Data-driven phylodynamics: molecular evolution to epidemiology. This project aims to uncover how different environmental and ecological variables drive the emergence of pathogens with increased transmissibility or virulence, known as variants. This will be achieved through extensive analyses of virus genome data.
This project expects to generate new knowledge in the field of pathogen evolution using novel data-driven statistical techniques for genomic analyses.
Expected outcomes of this project are a new understanding of the circumstances under which pathogen variants emerge and a suite of statistical tools to exploit the vast genome data available.
This should provide significant benefits by generating new knowledge with the potential to improve biosecurity, agriculture, and heath.
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SKELETAL MUSCLE: REVERSIBLE TEMEPERATURE-INDUCED UNCOUPLING OF CONTRACTION FROM THE ACTIVATOR Ca2+ AND TUBULAR SYSTEM ROLES IN MUSCLE FUNCTION REGULATION. Skeletal muscles represent the largest organ in the body of vertebrates and are responsible for major functions including maintaining posture and locomotion. Skeletal muscles are also a major source of heat production. The project focuses on temperature-induced effects on the ability of the skeletal muscle to contract in warm blooded animals, ....SKELETAL MUSCLE: REVERSIBLE TEMEPERATURE-INDUCED UNCOUPLING OF CONTRACTION FROM THE ACTIVATOR Ca2+ AND TUBULAR SYSTEM ROLES IN MUSCLE FUNCTION REGULATION. Skeletal muscles represent the largest organ in the body of vertebrates and are responsible for major functions including maintaining posture and locomotion. Skeletal muscles are also a major source of heat production. The project focuses on temperature-induced effects on the ability of the skeletal muscle to contract in warm blooded animals, including marsupials, and on the complex roles played by a cellular structure unique to the muscle fibre, the tubular system, with respect to regulation of muscle function at physiological temperatures. The project will test hypotheses that will have far-reaching implications for muscle physiology, cell biology and evolutionary biology.Read moreRead less
Genetic architecture and evolution of complex traits across populations. Most human traits have a genetic component and display substantial diversity within and among populations. How natural selection changes and maintains genetic variation in human traits is a long-standing question in evolution that the proposed project aims to answer. Using innovative statistical methods and largest genomic “big” datasets ever across populations of different ancestral backgrounds, this project expects to gen ....Genetic architecture and evolution of complex traits across populations. Most human traits have a genetic component and display substantial diversity within and among populations. How natural selection changes and maintains genetic variation in human traits is a long-standing question in evolution that the proposed project aims to answer. Using innovative statistical methods and largest genomic “big” datasets ever across populations of different ancestral backgrounds, this project expects to generate new knowledge on the roles of natural selection in shaping the genetic variation in traits and identify key factors that drive the differentiation of human populations. These outcomes will significantly improve our understanding on the evolution of human traits and adaptation of populations to changing environments.Read moreRead less