Real-time phylogenetics for food-borne outbreak surveillance. The project aims to introduce, for the first time, real-time evolutionary analysis of agricultural pathogens so that outbreaks affecting crops and the food supply can be managed precisely and rapidly. An expert team will implement a large-scale data analytics framework in user-friendly software that integrates Australian infectious disease genomics data with global data. Underpinning this work are new theory and algorithms that apply ....Real-time phylogenetics for food-borne outbreak surveillance. The project aims to introduce, for the first time, real-time evolutionary analysis of agricultural pathogens so that outbreaks affecting crops and the food supply can be managed precisely and rapidly. An expert team will implement a large-scale data analytics framework in user-friendly software that integrates Australian infectious disease genomics data with global data. Underpinning this work are new theory and algorithms that apply Sequential Monte Carlo to update phylogenetic analyses continuously as new data arrives. Expected outcomes include new knowledge of statistical algorithms for evolutionary analysis, relevant to biological disciplines beyond infectious disease; and enhanced capacity for infectious disease analysis. Read moreRead less
Discovery Early Career Researcher Award - Grant ID: DE240100316
Funder
Australian Research Council
Funding Amount
$435,431.00
Summary
Population genomic methods for modelling bacterial pathogen evolution. This project aims to develop novel techniques to model bacterial genome evolution and improve our understanding of how major agricultural and human pathogens, including Enterococcus, Salmonella and E. coli, evolve. The project expects to generate new knowledge about how horizontal gene transfer shapes the evolution of bacteria and how these dynamics vary over different temporal scales. Expected outcomes include methodological ....Population genomic methods for modelling bacterial pathogen evolution. This project aims to develop novel techniques to model bacterial genome evolution and improve our understanding of how major agricultural and human pathogens, including Enterococcus, Salmonella and E. coli, evolve. The project expects to generate new knowledge about how horizontal gene transfer shapes the evolution of bacteria and how these dynamics vary over different temporal scales. Expected outcomes include methodological advances that will enable the analysis of massive contemporary datasets. These methods and resulting analyses will provide significant benefits including informing the design of superior long-term interventions to reduce bacterial disease in both agriculture and health that are robust to the evolution of bacteria.Read moreRead less
Data-driven phylodynamics: molecular evolution to epidemiology. This project aims to uncover how different environmental and ecological variables drive the emergence of pathogens with increased transmissibility or virulence, known as variants. This will be achieved through extensive analyses of virus genome data.
This project expects to generate new knowledge in the field of pathogen evolution using novel data-driven statistical techniques for genomic analyses.
Expected outcomes of this proje ....Data-driven phylodynamics: molecular evolution to epidemiology. This project aims to uncover how different environmental and ecological variables drive the emergence of pathogens with increased transmissibility or virulence, known as variants. This will be achieved through extensive analyses of virus genome data.
This project expects to generate new knowledge in the field of pathogen evolution using novel data-driven statistical techniques for genomic analyses.
Expected outcomes of this project are a new understanding of the circumstances under which pathogen variants emerge and a suite of statistical tools to exploit the vast genome data available.
This should provide significant benefits by generating new knowledge with the potential to improve biosecurity, agriculture, and heath.
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Genetic architecture and evolution of complex traits across populations. Most human traits have a genetic component and display substantial diversity within and among populations. How natural selection changes and maintains genetic variation in human traits is a long-standing question in evolution that the proposed project aims to answer. Using innovative statistical methods and largest genomic “big” datasets ever across populations of different ancestral backgrounds, this project expects to gen ....Genetic architecture and evolution of complex traits across populations. Most human traits have a genetic component and display substantial diversity within and among populations. How natural selection changes and maintains genetic variation in human traits is a long-standing question in evolution that the proposed project aims to answer. Using innovative statistical methods and largest genomic “big” datasets ever across populations of different ancestral backgrounds, this project expects to generate new knowledge on the roles of natural selection in shaping the genetic variation in traits and identify key factors that drive the differentiation of human populations. These outcomes will significantly improve our understanding on the evolution of human traits and adaptation of populations to changing environments.Read moreRead less
Australian Laureate Fellowships - Grant ID: FL170100008
Funder
Australian Research Council
Funding Amount
$3,248,822.00
Summary
Genes, reproduction and inheritance in a microbe. The project aims to particularly explore sexual gene inheritance in Plasmodium, a representative of a large group of human and animal parasites. Plasmodium must have a sexual exchange of genes in the mosquito for the transfer of disease to a new host. This project will investigate the fate and behaviour of Plasmodium genes during reproduction; the differing chromosome states resulting from sexual genetic processes and the asymmetrical inheritance ....Genes, reproduction and inheritance in a microbe. The project aims to particularly explore sexual gene inheritance in Plasmodium, a representative of a large group of human and animal parasites. Plasmodium must have a sexual exchange of genes in the mosquito for the transfer of disease to a new host. This project will investigate the fate and behaviour of Plasmodium genes during reproduction; the differing chromosome states resulting from sexual genetic processes and the asymmetrical inheritance of some Plasmodium genes. The project is expected to advance Australia’s ability to understand the reproduction and survival of these parasites in their mosquito vector and develop cutting-edge genetic tools that will advance the microbial genetics discipline globally. This may ultimately lead to biotechnology and biomedical outcomes.Read moreRead less
Manipulative tests of metabolic theory. This project aims to take a new interdisciplinary approach to understanding how energy flows through individuals, populations, communities, and ecosystems. The project expects to develop a new framework for understanding the function of biological systems, bringing together the fields of physiology, ecology, and evolutionary biology, generating research publications, and training students in interdisciplinary research. The proposed research is anticipated ....Manipulative tests of metabolic theory. This project aims to take a new interdisciplinary approach to understanding how energy flows through individuals, populations, communities, and ecosystems. The project expects to develop a new framework for understanding the function of biological systems, bringing together the fields of physiology, ecology, and evolutionary biology, generating research publications, and training students in interdisciplinary research. The proposed research is anticipated to provide a means for understanding how management interventions can alter energy flows in biological systems, bringing benefits across the areas of climate change adaptation, conservation science, agriculture and aquaculture, and fisheries management.Read moreRead less
A new model for animal growth. This project aims to test and further develop a new theory for how animals grow. The new growth theory brings together the fields of physiology, ecology, and evolutionary biology, generating research publications, and training students. The proposed research is anticipated to provide a fundamentally new means for understanding how animals divide energy among growth and reproduction, paving the way for organismal allocation to these processes to be optimised by sele ....A new model for animal growth. This project aims to test and further develop a new theory for how animals grow. The new growth theory brings together the fields of physiology, ecology, and evolutionary biology, generating research publications, and training students. The proposed research is anticipated to provide a fundamentally new means for understanding how animals divide energy among growth and reproduction, paving the way for organismal allocation to these processes to be optimised by selective breeding or genetic manipulation, yielding potential benefits for aquaculture (enhanced growth) or re-introduction (enhanced reproduction).Read moreRead less
World Crime Fiction: Making Sense of a Global Genre. This project aims to generate new knowledge about the worldwide popularity of crime fiction by analysing the genre’s engagement with the major global challenges of our time, from climate change to the crisis of democracy. Using data from scholars and fans across all continents, and employing an innovative comparative methodology, it seeks to produce a new framework for analysing the global practice of crime fiction. Outcomes include a deeper u ....World Crime Fiction: Making Sense of a Global Genre. This project aims to generate new knowledge about the worldwide popularity of crime fiction by analysing the genre’s engagement with the major global challenges of our time, from climate change to the crisis of democracy. Using data from scholars and fans across all continents, and employing an innovative comparative methodology, it seeks to produce a new framework for analysing the global practice of crime fiction. Outcomes include a deeper understanding of the capacities of crime fiction to explore the complex relationship between crime, law and justice in various settings. The project will benefit Australia by creating new insights into the unique contribution of Australian, including Indigenous, crime writers to this truly global genre.Read moreRead less
Constituent power in federal constitutions. The concept of constituent power is fundamental to public law. This project aims to provide the first systematic and theoretical examination of the concept as it manifests in federations. The idea of constituent power was first developed in unitary states. Consequently, its role in federations has rarely been explored. Expected outcomes include a systematic comparative analysis of constituent power in federations and the development of a theory of plur ....Constituent power in federal constitutions. The concept of constituent power is fundamental to public law. This project aims to provide the first systematic and theoretical examination of the concept as it manifests in federations. The idea of constituent power was first developed in unitary states. Consequently, its role in federations has rarely been explored. Expected outcomes include a systematic comparative analysis of constituent power in federations and the development of a theory of pluralised constituent power. Expected benefits include the generation of insights into the constitutional foundations of federal systems (including Australia), new approaches to the interpretation of federal constitutions and mapping of pathways for legitimate constitutional reform.Read moreRead less
Control of vascular form and fate by a novel pre-mRNA splicing mechanism . Vertebrate vasculature forms elaborate, branched networks essential for life. As developing vessels permeate tissues and organs, dynamic and spatiotemporally regulated cellular signalling determines the fate, patterning and distribution of new vascular networks. This project follows the recent discovery of a mechanism whereby RNA diversification through alternative splicing controls complex signalling patterns in forming ....Control of vascular form and fate by a novel pre-mRNA splicing mechanism . Vertebrate vasculature forms elaborate, branched networks essential for life. As developing vessels permeate tissues and organs, dynamic and spatiotemporally regulated cellular signalling determines the fate, patterning and distribution of new vascular networks. This project follows the recent discovery of a mechanism whereby RNA diversification through alternative splicing controls complex signalling patterns in forming vessels. This project investigates this molecular mechanism in embryo and tissue development. The project will produce fundamental knowledge in RNA diversification, vascular fate, growth and cell signalling. New knowledge generated may lead to new approaches in stem cell biology, tissue engineering and regenerative biology.Read moreRead less