The evolution of dispersal on range edges. The rate at which an invasive species spreads, and the ability of a native species to adapt to environmental change, are both contingent on the dispersal ability of the species. Dispersal ability, however, evolves rapidly on the edge of a species' range. The rapid evolution of dispersal, therefore, determines the eventual range-limits of invasive species, as well as of native species responding to changing conditions. This research will provide tools ....The evolution of dispersal on range edges. The rate at which an invasive species spreads, and the ability of a native species to adapt to environmental change, are both contingent on the dispersal ability of the species. Dispersal ability, however, evolves rapidly on the edge of a species' range. The rapid evolution of dispersal, therefore, determines the eventual range-limits of invasive species, as well as of native species responding to changing conditions. This research will provide tools with which to predict the direction and rate of dispersal evolution on range-edges. The results of this work will, thus, massively facilitate management of invasive species and climate change.Read moreRead less
Comparative biosecurity informatics to anticipate invasive species threats. Invasive species cause billions in economic damages to Australia, but we do not have effective means to identify dangerous species before they arrive and cause harm. This project aims to overcome this challenge using the latest techniques in machine learning combined with genetic, ecological, and functional datasets for thousands of species. This project expects to generate a novel framework that allows us to identify an ....Comparative biosecurity informatics to anticipate invasive species threats. Invasive species cause billions in economic damages to Australia, but we do not have effective means to identify dangerous species before they arrive and cause harm. This project aims to overcome this challenge using the latest techniques in machine learning combined with genetic, ecological, and functional datasets for thousands of species. This project expects to generate a novel framework that allows us to identify and rank dangerous invasive species in an unbiased way, helping to safeguard Australia's unique biological community. Expected outcomes include improved methods for detecting ecologically and functionally similar species, providing substantial economic efficiency benefits to Australian biosecurity.Read moreRead less
Discovery Early Career Researcher Award - Grant ID: DE150101897
Funder
Australian Research Council
Funding Amount
$341,000.00
Summary
The Evolution of stripe rust virulence. Fungal crop pathogen epidemics lead to severe yield losses worldwide, impact national economies and individual human lives. Wheat stripe rust fungal epidemics caused by new virulent races can lead to 80 per cent reduction in yield. This project aims to investigate the molecular mechanisms leading to newly virulent races by whole genome, epigenome and transcriptome comparison of several wheat stripe rust races. This project aims to fundamentally advance our ....The Evolution of stripe rust virulence. Fungal crop pathogen epidemics lead to severe yield losses worldwide, impact national economies and individual human lives. Wheat stripe rust fungal epidemics caused by new virulent races can lead to 80 per cent reduction in yield. This project aims to investigate the molecular mechanisms leading to newly virulent races by whole genome, epigenome and transcriptome comparison of several wheat stripe rust races. This project aims to fundamentally advance our understanding of evolutionary forces driving virulence and specification at the whole (epi-)genome level in important fungal crop pathogens. This will promote new crop protection strategies important for local and global food security in an ever-changing environment.Read moreRead less
Fitting non-Gaussian diffusion models to evolutionary data: towards a generalized framework for phylogenetic comparative analyses. This project aims to develop cutting-edge statistical methods for evolutionary biology in order to answer big questions using data derived from multiple species. Such methods are needed because of the variety of multi-species data that are becoming available, which cannot be dealt with correctly using current methods. The research is significant because it will provi ....Fitting non-Gaussian diffusion models to evolutionary data: towards a generalized framework for phylogenetic comparative analyses. This project aims to develop cutting-edge statistical methods for evolutionary biology in order to answer big questions using data derived from multiple species. Such methods are needed because of the variety of multi-species data that are becoming available, which cannot be dealt with correctly using current methods. The research is significant because it will provide a new way of fitting a wide class of statistical models to evolutionary data, in a very general setting. Further, this project will unite current methodology in a broader framework so that the proposed new methods are a generalisation of currently accepted theory. The outcomes will include a freely-available software package that implements the methods in a user-friendly form.Read moreRead less
Efficient phylogenetic methods that manage the curse of genomic complexity. This project aims to develop new methods and software to infer the evolutionary history of organisms using genomic data. These new phylogenomic methods need to take account of the complexity of evolutionary processes and/or patterns in time (along the evolutionary tree) and space (along the genome). This project is significant because these methods must merge mathematics and statistics with High-Performance Computing to ....Efficient phylogenetic methods that manage the curse of genomic complexity. This project aims to develop new methods and software to infer the evolutionary history of organisms using genomic data. These new phylogenomic methods need to take account of the complexity of evolutionary processes and/or patterns in time (along the evolutionary tree) and space (along the genome). This project is significant because these methods must merge mathematics and statistics with High-Performance Computing to handle the huge quantities of genetic data and the complexity of evolution itself. An important expected outcome of this project will be the development and release of freely-available software that incorporates these new methods. This project expects to benefit scientists who need to infer phylogenies from genomic data. Read moreRead less
Linkage Infrastructure, Equipment And Facilities - Grant ID: LE150100083
Funder
Australian Research Council
Funding Amount
$540,000.00
Summary
A high throughput phenomics facility for pace of life traits in animals. A high throughput phenomics facility for pace of life traits in animals: This project seeks to create the first high-throughput phenomic facility for animals in Australia. The molecular revolution has brought unprecedented capacity to understand genetic variation. Genetic variation is now better understood and more easily and cheaply characterised than the physical traits that organisms exhibit. Linking phenotypic variation ....A high throughput phenomics facility for pace of life traits in animals. A high throughput phenomics facility for pace of life traits in animals: This project seeks to create the first high-throughput phenomic facility for animals in Australia. The molecular revolution has brought unprecedented capacity to understand genetic variation. Genetic variation is now better understood and more easily and cheaply characterised than the physical traits that organisms exhibit. Linking phenotypic variation to genetic variation represents the major challenge in harnessing the power of the biomolecular age. This facility will accommodate animals from marine, freshwater and terrestrial systems across a diverse array of phyla. It will allow Australian researchers to leverage advances in high throughput genomic technologies to address a major bottleneck in biology.Read moreRead less
Testing links between genomic and morphological evolutionary rates. This project aims to identify, understand, and characterise patterns of evolutionary rates across different levels of biological variation. The project expects to generate knowledge about the tempo and mode of evolution by using a phylogenetic approach to test fundamental models of evolutionary rates, including the link between rates of genomic and morphological evolution. Expected outcomes of this project include detailed insig ....Testing links between genomic and morphological evolutionary rates. This project aims to identify, understand, and characterise patterns of evolutionary rates across different levels of biological variation. The project expects to generate knowledge about the tempo and mode of evolution by using a phylogenetic approach to test fundamental models of evolutionary rates, including the link between rates of genomic and morphological evolution. Expected outcomes of this project include detailed insights into the tempo and mode of macroevolution, better modelling of genomic and phenotypic evolution, and improved design of studies in evolutionary genomics. Benefits of the project include greater understanding of the evolutionary processes that have generated the diversity of the Australian biota.Read moreRead less
Alternative reproductive tactics and threshold evolution. This research is focussed at the highest level in the field of evolutionary biology; testing recent theory for the evolution of alternative reproductive tactics and using these species to test hypotheses about adaptation. The proposal involves collaborations with high-profile researchers from three European countries and will increase Australia's standing as a world-leader in evolutionary biology. Australian students will benefit from exp ....Alternative reproductive tactics and threshold evolution. This research is focussed at the highest level in the field of evolutionary biology; testing recent theory for the evolution of alternative reproductive tactics and using these species to test hypotheses about adaptation. The proposal involves collaborations with high-profile researchers from three European countries and will increase Australia's standing as a world-leader in evolutionary biology. Australian students will benefit from exposure to high quality international collaborators. We will also increase our understanding of the biology of the European earwig, a pest species in Australia. Reproductive tactics are exciting topics for media attention and this research will reach a wide and interested Australian and world audience.Read moreRead less
Discovery Early Career Researcher Award - Grant ID: DE190100544
Funder
Australian Research Council
Funding Amount
$344,682.00
Summary
The drivers of genome evolution and diversification in marsupials. This project aims to investigate the impact of the four basic forces of evolution, mutation, selection, neutral drift, and gene flow, on the genome. Genome-scale data have a signature of these forces and extracting it would greatly improve the quality of evolutionary models fit to the data, but the framework to identify the evolutionary forces has not been developed. This project will develop tests for assessing the impact of the ....The drivers of genome evolution and diversification in marsupials. This project aims to investigate the impact of the four basic forces of evolution, mutation, selection, neutral drift, and gene flow, on the genome. Genome-scale data have a signature of these forces and extracting it would greatly improve the quality of evolutionary models fit to the data, but the framework to identify the evolutionary forces has not been developed. This project will develop tests for assessing the impact of the primary evolutionary forces on the genome, and test these methods using simulations. The new framework of genomic analysis will be disseminated through an intuitive software package, and will be used to estimate with unprecedented confidence the history of diversification and genome evolution of marsupials.Read moreRead less
Unravelling the molecular diversity and evolution of centipede venoms. The project intends to improve understanding of venom evolution in centipedes. Venoms have emerged as a rich source of pharmacological tools with potential for development into therapeutics and bioinsecticides. However, venoms-based discovery has been limited by the narrow taxonomical range of animals studied, with many groups of venomous animals overlooked. One such group is centipedes, whose venoms contain diverse toxins th ....Unravelling the molecular diversity and evolution of centipede venoms. The project intends to improve understanding of venom evolution in centipedes. Venoms have emerged as a rich source of pharmacological tools with potential for development into therapeutics and bioinsecticides. However, venoms-based discovery has been limited by the narrow taxonomical range of animals studied, with many groups of venomous animals overlooked. One such group is centipedes, whose venoms contain diverse toxins that differ between taxa. This project aims to provide an insight into centipede venom evolution, and how it might be constrained by venom-gland morphology. This study seeks to contribute to our understanding of protein evolution and direct biodiscovery efforts around centipede venom.Read moreRead less