Conservation genomics of a critically endangered insect. This project aims to develop tools genotyping large animal genomes, focusing on the case of the Lord Howe Island stick insect, once thought to be extinct and now critically endangered. This project expects to generate molecular tools to monitor the genetic health the insect which has a large, complex and poorly understood genome. Expected outcomes include the development of a preservation and reintroduction strategy for the insect. This pr ....Conservation genomics of a critically endangered insect. This project aims to develop tools genotyping large animal genomes, focusing on the case of the Lord Howe Island stick insect, once thought to be extinct and now critically endangered. This project expects to generate molecular tools to monitor the genetic health the insect which has a large, complex and poorly understood genome. Expected outcomes include the development of a preservation and reintroduction strategy for the insect. This project will benefit ongoing conservation efforts, and is timely given the ongoing eradication of rats from Lord Howe Island where this species once lived. Read moreRead less
Assessing Egg Oiling As A Long Term Management Tool For Overabundant Silver Gull Populations Interacting With Southern Bluefin Tuna Aquaculture Operations
Funder
Fisheries Research and Development Corporation
Funding Amount
$560,056.00
Summary
Agencies responsible for management of the aquaculture industry in collaboration with industry stakeholders are committed to incorporating principles of Ecologically Sustainable Development (ESD) into aquaculture regulatory processes (Fletcher 2004). One of the key objectives of ESD is "to protect biological diversity and maintain essential ecological processes and life-support systems". Addressing the ecological impacts of an overabundant legacy population of Silver Gulls in close proximity to ....Agencies responsible for management of the aquaculture industry in collaboration with industry stakeholders are committed to incorporating principles of Ecologically Sustainable Development (ESD) into aquaculture regulatory processes (Fletcher 2004). One of the key objectives of ESD is "to protect biological diversity and maintain essential ecological processes and life-support systems". Addressing the ecological impacts of an overabundant legacy population of Silver Gulls in close proximity to tuna operations in Port Lincoln has been identified as a priority by ASBTIA, in consultation with DEW and PIRSA, to address this ESD objective.
The project is a collaboration between resource management agencies and the tuna aquaculture industry in Port Lincoln. It seeks to expand on the research of Harrison (2010) to assess a three-year trial of Silver Gull egg oiling on selected off-shore islands near Port Lincoln and its impact on local reproductive success and population numbers of Silver Gulls. In doing so it aims to assess the efficacy of egg oiling as a possible management technique to control growth of Silver Gull populations and thereby reduce the current detrimental economic, social and environmental impacts associated with recent increases in Silver Gull numbers in the Port Lincoln region.
Information provided through the research project will inform any ongoing monitoring and management of over-abundant Silver Gull populations within the frameworks of the region's National Park Management Plans and within PIRSA Aquaculture policy objectives. The efficacy of egg oiling and indices measured in the project will also be assessed to provide guidance on any future egg oiling management intervention.
Objectives: 1. Undertake a review and Cost Benefit Analysis (CBA) of over-abundant seabird population management strategies. This will be a project Stop/Go point to assess whether egg oiling provides the best management option for Silver Gull population control, and will determine whether the project proceeds as planned. 2. Estimate Silver Gull population size and structure through counts of breeding pairs (nest) and juveniles at up to five islands near Southern Bluefin Tuna aquaculture operations. Compare estimates with historical information for population trend analyses. 3. Obtain estimates of breeding success from oiled (treated) versus non-oiled (control) Silver Gull nests for use in population modelling. 4. Quantify short term effects of egg oiling on juvenile abundance, through measurement of the ratio of juvenile to adult Silver Gulls present at Southern Bluefin tuna aquaculture farms over three years and assess this indicator's efficacy in providing evidence of egg oiling management. 5. Assess Silver Gull breeding schedules, movement and habitat use within the study area. 6. Develop population models to assess the sensitivity of Silver Gull populations to reductions in breeding success from egg oiling and inform ongoing management targets for Silver Gull population numbers. Read moreRead less
Evolution and role of neo-sex chromosomes in mitonuclear co-evolution. This project aims to characterize the evolution of novel, extended sex chromosomes in an Australian bird, then elucidate their role in climate-associated adaptive evolution. The species falls into two lineages bearing distinct mitochondrial genomes and nuclear-encoded mitochondrial genes carried on sex chromosomes. The project aims to test whether this extraordinary genome arrangement is splitting the species into two forms: ....Evolution and role of neo-sex chromosomes in mitonuclear co-evolution. This project aims to characterize the evolution of novel, extended sex chromosomes in an Australian bird, then elucidate their role in climate-associated adaptive evolution. The species falls into two lineages bearing distinct mitochondrial genomes and nuclear-encoded mitochondrial genes carried on sex chromosomes. The project aims to test whether this extraordinary genome arrangement is splitting the species into two forms: one adapted to hotter, drier environments, one to milder ones. This would be tackled using an innovative combination of genomics, cytogenetics, and metabolic data. Understanding the mechanisms at play would represent a major advance in ecology and evolution, with potential implications for conservation management.Read moreRead less
Can mitochondrial and nuclear co-evolution drive climate adaptation? This project aims to reveal whether co-evolution between the mitochondrial genome of a wild bird and partner nuclear genes is causing the species to split into two forms, one adapted to inland environments and one to coastal conditions. Mitochondrial-nuclear co-evolution has great potential to illuminate new modes of climate adaptation and lineage divergence. This understanding will provide significant benefits, with implicatio ....Can mitochondrial and nuclear co-evolution drive climate adaptation? This project aims to reveal whether co-evolution between the mitochondrial genome of a wild bird and partner nuclear genes is causing the species to split into two forms, one adapted to inland environments and one to coastal conditions. Mitochondrial-nuclear co-evolution has great potential to illuminate new modes of climate adaptation and lineage divergence. This understanding will provide significant benefits, with implications for conservation management.Read moreRead less
Unlocking the secrets of the mitochondrion. This project aims to determine the frequency and mechanisms by which male-harming mutations (those with negative effects limited to males) accrue within the mitochondrial DNA. Theory predicts maternal inheritance of mitochondrial DNA will lead to accumulation of these mutations, but the real-world implications of this theory are unknown. Leveraging an innovative approach, this project expects to generate new knowledge into the causes of sex differences ....Unlocking the secrets of the mitochondrion. This project aims to determine the frequency and mechanisms by which male-harming mutations (those with negative effects limited to males) accrue within the mitochondrial DNA. Theory predicts maternal inheritance of mitochondrial DNA will lead to accumulation of these mutations, but the real-world implications of this theory are unknown. Leveraging an innovative approach, this project expects to generate new knowledge into the causes of sex differences in physiology and health. Expected outcomes include insights that advance understanding of fundamental biological processes, and training of students. Expected benefits include strengthening of Australia’s research capacity, by setting the research agenda in this rapidly developing field.Read moreRead less
Recombination and the genomic landscape of speciation. This project aims to evaluate how genomes become different during the origin of species by utilising an innovative system where multiple replicates of the speciation process exist. This project expects to generate knowledge in the area of speciation genetics by exploring the effects of sex, migration and selection on the diversity of hundreds of genomes from an Australian wildflower. Expected outcomes of this project include a deeper underst ....Recombination and the genomic landscape of speciation. This project aims to evaluate how genomes become different during the origin of species by utilising an innovative system where multiple replicates of the speciation process exist. This project expects to generate knowledge in the area of speciation genetics by exploring the effects of sex, migration and selection on the diversity of hundreds of genomes from an Australian wildflower. Expected outcomes of this project include a deeper understanding of the maintenance of genetic diversity in natural populations, and development of a model organism for studying the genetics and ecology of speciation. This project should provide significant benefits including enhanced capacity in evolutionary genetics in Australia.Read moreRead less
Developing A Cost-effective Monitoring Regime And Stock Assessment For Sand Flathead In Tasmania
Funder
Fisheries Research and Development Corporation
Funding Amount
$703,700.00
Summary
Sand Flathead account for well over half of the total catch (by numbers) taken by marine recreational fishers in Tasmania and represent the mainstay of Tasmania's recreational fishery. Furthermore, since the recreational catch of sand flathead is more than 20 times the commercial catch, trends in commercial catch and catch rates are of little value in inferring changes in stock status. This has meant that fishery independent or novel assessment methods are required. To date, IMAS has implemente ....Sand Flathead account for well over half of the total catch (by numbers) taken by marine recreational fishers in Tasmania and represent the mainstay of Tasmania's recreational fishery. Furthermore, since the recreational catch of sand flathead is more than 20 times the commercial catch, trends in commercial catch and catch rates are of little value in inferring changes in stock status. This has meant that fishery independent or novel assessment methods are required. To date, IMAS has implemented a research program focused on sand flathead in the south-east of the state that provides a spatially restricted, perspective and semi-quantitative evaluation of stock condition. Given the significance of the species and a status of 'depleting' in the latest stock assessment report, there is a need to implement a more comprehensive stock monitoring approach throughout the state that can support the development of a spatially explicit quantitative stock assessment model. There is also a need to determine the appropriate spatial resolution to apply to the stock assessment model. As such, there is a need to understand the extent of adult movement and ontogenetic connectivity of regional sub-populations of sand flathead throughout Tasmania. In addition, by collation of biological data sets from historical studies and surveys conducted around Tasmania the extent and direction of potential changes in population size structures, and life history characteristics will be investigated. Where possible collated biological data will be used to assess spatial and temporal changes in life history characteristics to assess the implications of selective excessive fishing pressure and/or past and future climate change effects for this species. Objectives: 1. Review and collate available biological and fishery data collected on sand flathead within Tasmanian waters 2. Design, implement and assess the effectiveness of fishery dependent and fishery independent biological sample collection techniques for sand flathead 3. Determine the spatial and temporal variability of key life history characteristics and population structures of sand flathead 4. Investigate movement and connectivity of sand flathead within Tasmania 5. Develop a quantitative region-age-sex structured fishery assessment model for sand flathead 6. Identify management scenarios for consideration Read moreRead less
Quantifying the impact of phenotypic plasticity on population persistence. This project aims to understand how environmental sensitivity in growth, survival and reproduction of individuals in a population influence population dynamics using terrestrial ectotherms. It will provide significant new insights into whether phenotypic plasticity promotes population persistence in the face of environmental change. Expected outcomes include approaches for incorporating environmental effects in population ....Quantifying the impact of phenotypic plasticity on population persistence. This project aims to understand how environmental sensitivity in growth, survival and reproduction of individuals in a population influence population dynamics using terrestrial ectotherms. It will provide significant new insights into whether phenotypic plasticity promotes population persistence in the face of environmental change. Expected outcomes include approaches for incorporating environmental effects in population models for threatened species, open databases that can be used to estimate demographic information for species lacking data, and an assessment of what characteristics make some species more sensitive to the environment than others. Benefits include quantitative training and tools for managing Australia's rich biodiversity.Read moreRead less
Cost-effective, Non-destructive Solutions To Developing A Pre-recruit Index For Snapper
Funder
Fisheries Research and Development Corporation
Funding Amount
$541,804.00
Summary
The population dynamics and fishable biomass of Snapper in South Australia are fundamentally driven by high inter-annual variation in recruitment, i.e. the numbers of 0+ juveniles that recruit to populations. Throughout the 2000s, SA’s Snapper stocks experienced different trends in recruitment that led to extraordinarily different trends in fishery catches. For the Spencer Gulf/West Coast Stock successive poor year classes led to the significant decline in fishable biomass, and a ‘depleted’ st ....The population dynamics and fishable biomass of Snapper in South Australia are fundamentally driven by high inter-annual variation in recruitment, i.e. the numbers of 0+ juveniles that recruit to populations. Throughout the 2000s, SA’s Snapper stocks experienced different trends in recruitment that led to extraordinarily different trends in fishery catches. For the Spencer Gulf/West Coast Stock successive poor year classes led to the significant decline in fishable biomass, and a ‘depleted’ stock status. In contrast, the Gulf St. Vincent Stock increased to unprecedented levels due to numerous strong recruitment year classes, but since 2015 has also experienced considerable declines in fishery catches. In 2019 it was classified as ‘depleting’. From 2018, concerns about both stocks prompted a comprehensive review of the fishery management approach. This resulted in significant changes to the management strategy including a spatial and long-term fishery closure. Despite this, there remains the need to monitor the stocks and demographic processes. Given the significance of variable recruitment for Snapper, the need for regional, annual estimates of recruitment as an indicator of future trends in fishable biomass has re-emerged. Between 2000 and 2010, recruitment surveys were done in Northern Spencer Gulf, for which the sampling methodology, i.e. otter trawling, was non-selective and destructive of benthic and demersal biota. One need here is to develop a cost-effective, non-destructive sampling strategy for future annual sampling. Also, there is the need to develop a better understanding of larval ecology, connectivity, and the causes of variable recruitment. Combined benefits from addressing both needs would significantly enhance predicting future trends in fishable biomass.
Objectives: 1. To develop our understanding of the processes that regulate recruitment based on finalising datasets from previous research projects that relate to the early life history, and larval and juvenile ecology of Snapper, as well as the annual variation in environmental factors 2. To undertake an empirical study to compare the utility and effectiveness of several potential sampling methodologies to provide a relative recruitment index for Snapper and to develop a sampling strategy for future surveys 3. To apply the sampling strategy as developed in Objective 2 in the following two years, to provide relative estimates of the recruitment rates for Snapper in NSG and NGSV Read moreRead less