Discovery Early Career Researcher Award - Grant ID: DE150101484
Funder
Australian Research Council
Funding Amount
$365,000.00
Summary
Developing custom RNA processing tools. The pentatricopeptide repeat (PPR) code has been described as an RNA code that connects specific residues in PPR motifs with the precise recognition of individual nucleotides. It will enable the design of custom RNA-binding proteins with tremendous potential in research and biotechnology. RNA-processing technologies aim to be developed that consist of PPR domains fused with an additional endonuclease domain for cleaving chosen target RNAs. In the longer te ....Developing custom RNA processing tools. The pentatricopeptide repeat (PPR) code has been described as an RNA code that connects specific residues in PPR motifs with the precise recognition of individual nucleotides. It will enable the design of custom RNA-binding proteins with tremendous potential in research and biotechnology. RNA-processing technologies aim to be developed that consist of PPR domains fused with an additional endonuclease domain for cleaving chosen target RNAs. In the longer term, successful technologies will be tested in living organisms for biotechnology applications or in new therapeutic strategies.Read moreRead less
Race status, sources of resistance and mechanisms of resistance to Peronospora parasitica, a major threat to oilseed Brassica production in Australia. Through successful identification of mechanisms and molecular characterisation of resistance to Peronospora parasitica races and the identification of sources of host resistance against these races, breeders, for the first time, will be able to develop cultivars with resistance against the full spectrum of P. parasitica races occurring across sout ....Race status, sources of resistance and mechanisms of resistance to Peronospora parasitica, a major threat to oilseed Brassica production in Australia. Through successful identification of mechanisms and molecular characterisation of resistance to Peronospora parasitica races and the identification of sources of host resistance against these races, breeders, for the first time, will be able to develop cultivars with resistance against the full spectrum of P. parasitica races occurring across southern Australia. Benefits include prevention of severe losses in canola from downy mildew, and more viable and sustainable production with less reliance upon fungicides. This research addresses the National Research Priority 'An Environmentally Sustainable Australia' and the Priority Goal of 'Transforming existing industries', and will particularly benefit southern Australian rural communities.Read moreRead less
Race status, resistance mechanisms, and new sources of resistance to Phytophthora clandestina, a major threat to subterranean clover production. Devastating outbreaks of disease caused by Phytophthora clandestina (Phytophthora root rot) since the late 1970s demonstrated the capacity of this disease to impact severely on clover pasture production across southern Australia, particularly as new races of Phytophthora have rapidly emerged to overcome the resistance of all commercial cultivars. The p ....Race status, resistance mechanisms, and new sources of resistance to Phytophthora clandestina, a major threat to subterranean clover production. Devastating outbreaks of disease caused by Phytophthora clandestina (Phytophthora root rot) since the late 1970s demonstrated the capacity of this disease to impact severely on clover pasture production across southern Australia, particularly as new races of Phytophthora have rapidly emerged to overcome the resistance of all commercial cultivars. The proposed research seeks to delineate new races of the pathogen, to identify the histological and biochemical mechanisms by which resistance to Phytophthora root rot is expressed, and to identify new sources of host resistance. This proposed research will enable breeders, for the first time, to incorporate multiple types of resistance and against different races into new host varieties.Read moreRead less
Fungal pathogens threatening the sub-tropical eucalypt plantation industry in Australia. Eucalypt plantations in Australia are at risk from both native pathogens and those that have emerged on exotic eucalypt plantations and been introduced to Australia. Most of the serious pathogens of exotic plantations have emerged in the sub-tropics in climates very similar to those in Queensland. It is not known if these pathogens have already been introduced to Australia; however, increased movement of ger ....Fungal pathogens threatening the sub-tropical eucalypt plantation industry in Australia. Eucalypt plantations in Australia are at risk from both native pathogens and those that have emerged on exotic eucalypt plantations and been introduced to Australia. Most of the serious pathogens of exotic plantations have emerged in the sub-tropics in climates very similar to those in Queensland. It is not known if these pathogens have already been introduced to Australia; however, increased movement of germplasm and forest products increases the risk of introducing new eucalypt pathogens. This project will involve a detailed examination of pathogens present on eucalypts in Queensland. Studies of the diversity of pathogens and determination of their reproductive mode and their pathogenicity will enable for detailed risk assessments. Assessment of genetic trials for disease incidence will provide valuable information for future selections and breeding.Read moreRead less
Linkage Infrastructure, Equipment And Facilities - Grant ID: LE130100081
Funder
Australian Research Council
Funding Amount
$500,000.00
Summary
Spectral climate chamber facilities for phenomic studies of plant light response adaptation. Climates are changing, altering planting regimes in agriculture, and disrupting local adaptation in foundation species. The genetic basis of climate adaptation will be dissected in new plant growth facilities, equipped with real-time imaging and environmental controls that can mimic dynamic seasonal growing conditions and weather stress events.
Building better Brassicas: Understanding disease resistance mechanisms across the Brassicaceae. Brassica species are important crops producing cooking oil, vegetables and biofuel, grown in diverse environments with a high economic and export value. Blackleg disease, caused by the fungus Leptospheria maculans, is the most important disease of brassica crops world-wide. The newly available brassica genome sequence provides the resources to study the co-evolution of this plant and pathogen. This pr ....Building better Brassicas: Understanding disease resistance mechanisms across the Brassicaceae. Brassica species are important crops producing cooking oil, vegetables and biofuel, grown in diverse environments with a high economic and export value. Blackleg disease, caused by the fungus Leptospheria maculans, is the most important disease of brassica crops world-wide. The newly available brassica genome sequence provides the resources to study the co-evolution of this plant and pathogen. This project will characterise the evolution and conservation of resistance genes in wild and cultivated brassicas, using next-generation sequencing technology, to assess their potential for crop improvement. An understanding of the evolution of genes responsible for resistance will lead to improved plant protection strategies for brassica crops.Read moreRead less
A portable RNA-editing machine. Many plants maintain an elaborate RNA-editing machine that allows them to correct accumulated errors in their organellar genomes by specifically editing the RNA transcripts of the affected genes. A portable and adaptable version of this molecular machine would have significant biotechnological value, providing the ability to correct genetic errors, and to intervene in gene regulation without permanently altering a genome. The project aims to combine molecular and ....A portable RNA-editing machine. Many plants maintain an elaborate RNA-editing machine that allows them to correct accumulated errors in their organellar genomes by specifically editing the RNA transcripts of the affected genes. A portable and adaptable version of this molecular machine would have significant biotechnological value, providing the ability to correct genetic errors, and to intervene in gene regulation without permanently altering a genome. The project aims to combine molecular and structural biology approaches to fully characterise the components of the machine, thus allowing us to reconstitute it in cell-free systems and ultimately in other organisms.Read moreRead less
Field based molecular diagnostics for identification of plant parasitic nematodes. Nematodes are economically important pests of many agricultural and commercially grown plants. We have shown 'proof-of-concept' that plant parasitic nematodes can be identified by protein profiling using MALDI-TOF mass spectroscopy. In this project advanced techniques of proteomics and associated bioinformatics will be used to identify, isolate and characterise proteins that are specific to economically important ....Field based molecular diagnostics for identification of plant parasitic nematodes. Nematodes are economically important pests of many agricultural and commercially grown plants. We have shown 'proof-of-concept' that plant parasitic nematodes can be identified by protein profiling using MALDI-TOF mass spectroscopy. In this project advanced techniques of proteomics and associated bioinformatics will be used to identify, isolate and characterise proteins that are specific to economically important nematode species and races, and to identify diagnostic proteins or epitopes. The diagnostic proteins will be used to generate specific monoclonal antibodies that will be incorporated into immunochemical 'Lateral Flow' devices. These will provide on-site tests to identify nematodes for growers and quarantine services. Read moreRead less
Combinatorial controlled gene expression delivering crops resistant to nematodes. Root-knot nematodes cause US$130 billion crop losses worldwide pa, and at least AUS$ 450 pa in Australia. Current control methods involve fumigation, chemicals (mainly carbamates and organophosphates), natural plant resistance and biological control. The fumigants (eg methyl bromide) are being phased out because they damage the ozone layer, most of the non-fumigants are being banned because of environmental damag ....Combinatorial controlled gene expression delivering crops resistant to nematodes. Root-knot nematodes cause US$130 billion crop losses worldwide pa, and at least AUS$ 450 pa in Australia. Current control methods involve fumigation, chemicals (mainly carbamates and organophosphates), natural plant resistance and biological control. The fumigants (eg methyl bromide) are being phased out because they damage the ozone layer, most of the non-fumigants are being banned because of environmental damage and persistence in groundwater, and biological control has had limited success. These problems are addressed in this project with development of synthetic plant resistance to nematodes, which will benefit horticultural and broadacre farming by reducing pathogen losses and improving quality.Read moreRead less
Deciphering a protein code for recognising Ribonucleic acid (RNA) targets. This project will decipher the protein code employed by a large family of plant proteins for the specific recognition of RNA sequences. This knowledge will be immediately helpful for designing a new generation of biotechnological tools for the agricultural and biomedical sciences.