Conservation genomics of a critically endangered insect. This project aims to develop tools genotyping large animal genomes, focusing on the case of the Lord Howe Island stick insect, once thought to be extinct and now critically endangered. This project expects to generate molecular tools to monitor the genetic health the insect which has a large, complex and poorly understood genome. Expected outcomes include the development of a preservation and reintroduction strategy for the insect. This pr ....Conservation genomics of a critically endangered insect. This project aims to develop tools genotyping large animal genomes, focusing on the case of the Lord Howe Island stick insect, once thought to be extinct and now critically endangered. This project expects to generate molecular tools to monitor the genetic health the insect which has a large, complex and poorly understood genome. Expected outcomes include the development of a preservation and reintroduction strategy for the insect. This project will benefit ongoing conservation efforts, and is timely given the ongoing eradication of rats from Lord Howe Island where this species once lived. Read moreRead less
Genomic tools for the emerging tropical rock lobster aquaculture industry. Australia has just developed the skills to farm tropical rock lobsters, a popular celebratory dish in Asia. Our project will boost this industry by developing genetic markers, which later can be used to choose the best stud lobsters for breeding.
Molecular identification of blowflies of forensic importance and thermal effects on their behaviour: tools to enhance forensic entomology in Australia. In suspicious deaths in which a body is found three or more days post-mortem, carrion-breeding blowflies provide time since death estimates. These estimates are currently slow and relatively broad due to (a) an inability to adequately distinguish immatures morphologically, and (b) insufficient information on the biological responses of different ....Molecular identification of blowflies of forensic importance and thermal effects on their behaviour: tools to enhance forensic entomology in Australia. In suspicious deaths in which a body is found three or more days post-mortem, carrion-breeding blowflies provide time since death estimates. These estimates are currently slow and relatively broad due to (a) an inability to adequately distinguish immatures morphologically, and (b) insufficient information on the biological responses of different species to temperature. We will develop rapid molecular assays to distinguish blowfly species, and comprehensively chart the behavioural effects of temperature on the most forensically important blowflies. Molecular and adult morphological data will also be used to examine the evolution of the carrion-breeding blowflies.Read moreRead less
Safeguarding honeybees: understanding host-parasite interactions at the level of proteins. Parasites are responsible for dramatic declines of honeybee populations resulting in a loss of pollination services and posing a threat to food production and ecosystem stability. This project will study the honeybee immune system and its interactions with bee parasites on the molecular scale, which will be important to guide future bee breeding.
Race status, sources of resistance and mechanisms of resistance to Peronospora parasitica, a major threat to oilseed Brassica production in Australia. Through successful identification of mechanisms and molecular characterisation of resistance to Peronospora parasitica races and the identification of sources of host resistance against these races, breeders, for the first time, will be able to develop cultivars with resistance against the full spectrum of P. parasitica races occurring across sout ....Race status, sources of resistance and mechanisms of resistance to Peronospora parasitica, a major threat to oilseed Brassica production in Australia. Through successful identification of mechanisms and molecular characterisation of resistance to Peronospora parasitica races and the identification of sources of host resistance against these races, breeders, for the first time, will be able to develop cultivars with resistance against the full spectrum of P. parasitica races occurring across southern Australia. Benefits include prevention of severe losses in canola from downy mildew, and more viable and sustainable production with less reliance upon fungicides. This research addresses the National Research Priority 'An Environmentally Sustainable Australia' and the Priority Goal of 'Transforming existing industries', and will particularly benefit southern Australian rural communities.Read moreRead less
Race status, resistance mechanisms, and new sources of resistance to Phytophthora clandestina, a major threat to subterranean clover production. Devastating outbreaks of disease caused by Phytophthora clandestina (Phytophthora root rot) since the late 1970s demonstrated the capacity of this disease to impact severely on clover pasture production across southern Australia, particularly as new races of Phytophthora have rapidly emerged to overcome the resistance of all commercial cultivars. The p ....Race status, resistance mechanisms, and new sources of resistance to Phytophthora clandestina, a major threat to subterranean clover production. Devastating outbreaks of disease caused by Phytophthora clandestina (Phytophthora root rot) since the late 1970s demonstrated the capacity of this disease to impact severely on clover pasture production across southern Australia, particularly as new races of Phytophthora have rapidly emerged to overcome the resistance of all commercial cultivars. The proposed research seeks to delineate new races of the pathogen, to identify the histological and biochemical mechanisms by which resistance to Phytophthora root rot is expressed, and to identify new sources of host resistance. This proposed research will enable breeders, for the first time, to incorporate multiple types of resistance and against different races into new host varieties.Read moreRead less
Insect age: an ecological genomics approach to understanding host-parasite interactions. The importance of insect age (or the age structure of a population of insects) in understanding relationships between insects and their abiotic and biotic environment has been stressed in many theoretical studies but seldom directly tested. This is because few tools exist that can accurately measure the age of a wild-caught insect with any accuracy. In this proposal we plan to use a genomics approach to deve ....Insect age: an ecological genomics approach to understanding host-parasite interactions. The importance of insect age (or the age structure of a population of insects) in understanding relationships between insects and their abiotic and biotic environment has been stressed in many theoretical studies but seldom directly tested. This is because few tools exist that can accurately measure the age of a wild-caught insect with any accuracy. In this proposal we plan to use a genomics approach to develop tools that can be used to efficiently determine the age of an insect and then apply these tools to better understand the relationship between insect age and the ability of an insect to transmit pathogens to humans, livestock or plants. These tools will also have future applicability in developing new approaches to control insect transmitted disease as well as provide methodology to determine the effectiveness of current control programs that seek to kill pest insect populations of agricultural or public health significance.Read moreRead less
Environmental stress profiling (ESP): Molecular profiling of sediment microbial communities for improved biological monitoring in aquatic ecosystems. Water resource management is a key issue for environmental sustainability in Australia and strategies that include ecological principles are important to improve present conditions and reduce further degradation. Current biomonitoring methods suffer from a low degree of sensitivity that can seriously impact their effectiveness as early warning sign ....Environmental stress profiling (ESP): Molecular profiling of sediment microbial communities for improved biological monitoring in aquatic ecosystems. Water resource management is a key issue for environmental sustainability in Australia and strategies that include ecological principles are important to improve present conditions and reduce further degradation. Current biomonitoring methods suffer from a low degree of sensitivity that can seriously impact their effectiveness as early warning signals of ecological disturbance. We propose to combine molecular and ecotoxicological assessment of the effect of zinc toxicity on microbial communities to provide rapid pollution sensitive bioassessment. Our research will lead to a better understanding of the cause and effect of heavy metal pollution within aquatic ecosystems and greater insight on how to reduce and repair the negative effects.Read moreRead less
Fungal pathogens threatening the sub-tropical eucalypt plantation industry in Australia. Eucalypt plantations in Australia are at risk from both native pathogens and those that have emerged on exotic eucalypt plantations and been introduced to Australia. Most of the serious pathogens of exotic plantations have emerged in the sub-tropics in climates very similar to those in Queensland. It is not known if these pathogens have already been introduced to Australia; however, increased movement of ger ....Fungal pathogens threatening the sub-tropical eucalypt plantation industry in Australia. Eucalypt plantations in Australia are at risk from both native pathogens and those that have emerged on exotic eucalypt plantations and been introduced to Australia. Most of the serious pathogens of exotic plantations have emerged in the sub-tropics in climates very similar to those in Queensland. It is not known if these pathogens have already been introduced to Australia; however, increased movement of germplasm and forest products increases the risk of introducing new eucalypt pathogens. This project will involve a detailed examination of pathogens present on eucalypts in Queensland. Studies of the diversity of pathogens and determination of their reproductive mode and their pathogenicity will enable for detailed risk assessments. Assessment of genetic trials for disease incidence will provide valuable information for future selections and breeding.Read moreRead less
A multidisciplinary research program to assess limiting factors and predict impacts of climate change for endangered Australian orchids. Climate change poses a significant threat to biodiversity. Australian sexually deceptive orchids are dependent on obligate and specialised interactions with pollinators and fungi. Consequently, they may face a high risk of extinction if climate change uncouples these interactions. Thus orchids provide an important bio-indicator of change. The tools and expertis ....A multidisciplinary research program to assess limiting factors and predict impacts of climate change for endangered Australian orchids. Climate change poses a significant threat to biodiversity. Australian sexually deceptive orchids are dependent on obligate and specialised interactions with pollinators and fungi. Consequently, they may face a high risk of extinction if climate change uncouples these interactions. Thus orchids provide an important bio-indicator of change. The tools and expertise developed will contribute directly to the conservation of endangered Australian orchids, and will take into account the risks of climate change. The project will contribute to the priority research goals of sustainable use of Australia's biodiversity as well as responding to climate change and variability. The project will also provide high quality, cross-disciplinary training.Read moreRead less