A hierarchical quantum mechanical and classical simulation of biological ion channels. I aim to develop a methodology incorporating molecular quantum
mechanics and classical Brownian mechanics in a way that can be
applied practically to large macromolecular systems, thus relating
fine structural details to experimentally measurable
properties. Specifically, I will apply this methodology to study ion
channels in which the challenge is to relate electronic and atomic
structure to the conduct ....A hierarchical quantum mechanical and classical simulation of biological ion channels. I aim to develop a methodology incorporating molecular quantum
mechanics and classical Brownian mechanics in a way that can be
applied practically to large macromolecular systems, thus relating
fine structural details to experimentally measurable
properties. Specifically, I will apply this methodology to study ion
channels in which the challenge is to relate electronic and atomic
structure to the conductance properties of the channel. Accurately
determining these relationships provides a pathway to developing cures
for many neurological, cardiac, and muscular diseases.
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Linkage Infrastructure, Equipment And Facilities - Grant ID: LE130100040
Funder
Australian Research Council
Funding Amount
$450,000.00
Summary
Integrated Greenhouse Gas Measurement System (IGMS) for monitoring agricultural emissions at field to regional scales. Measurement of greenhouse gases is critical to Australia’s obligations to reduce carbon emissions. The measurement facility will provide urgently needed accurate emission data from Australian agriculture to establish emission baselines and develop methods to extend the point-scale measurements to whole farm, regional and national scales.
ARC Centre for Kangaroo Genome. In this Australian-led Kangaroo Genome Project, we will map and characterize the tammar wallaby genome at the molecular level. Marsupial genomes are uniquely valuable because they provide comparisons that reveal new human genes, regulatory sequences and marsupial-specific genes. These will deliver new products and information useful for medicine, industry, agriculture and conservation. We will construct integrated genetic and physical maps of the genome, clone the ....ARC Centre for Kangaroo Genome. In this Australian-led Kangaroo Genome Project, we will map and characterize the tammar wallaby genome at the molecular level. Marsupial genomes are uniquely valuable because they provide comparisons that reveal new human genes, regulatory sequences and marsupial-specific genes. These will deliver new products and information useful for medicine, industry, agriculture and conservation. We will construct integrated genetic and physical maps of the genome, clone the whole genome as large inserts in BAC vectors, and build a "golden path" with minimal overlap. We will construct libraries of expressed genes from tammar tissues and array them for use in analysing gene expression.Read moreRead less
Economic Growth and Real Exchange Rates. Exchange rate movements are important elements of Australia's economic environment. Protectionist interests in the US and Europe, constrained by WTO trade rules, accuse East Asian economies of deliberate undervaluation. While exchange rate movements are not readily predictable in the short run, long run changes in underlying real exchange rates are amenable to economic analysis using structural models. The clearer understanding of these forces, toward ....Economic Growth and Real Exchange Rates. Exchange rate movements are important elements of Australia's economic environment. Protectionist interests in the US and Europe, constrained by WTO trade rules, accuse East Asian economies of deliberate undervaluation. While exchange rate movements are not readily predictable in the short run, long run changes in underlying real exchange rates are amenable to economic analysis using structural models. The clearer understanding of these forces, toward which this project is directed, will better guide investment in the region, including in Australia, and more importantly, it will better inform future policy debates surrounding currency movements.Read moreRead less
Environmental contamination and pig disease: an Australian microbe evolves. The Australian pig industry produces pork commodities from over 4.75 million pigs per year. Infectious diseases in industrial-scale piggeries can have a devastating effect on pork production, particularly on feed conversion efficiency and growth rates, and can pose downstream environmental contamination and food safety risks. This project aims to assess a current infectious disease problem in pigs by studying a microbe t ....Environmental contamination and pig disease: an Australian microbe evolves. The Australian pig industry produces pork commodities from over 4.75 million pigs per year. Infectious diseases in industrial-scale piggeries can have a devastating effect on pork production, particularly on feed conversion efficiency and growth rates, and can pose downstream environmental contamination and food safety risks. This project aims to assess a current infectious disease problem in pigs by studying a microbe that appears to have uniquely evolved in Australia. These results could inform the rational design of monitoring, prevention and treatment strategies to minimise infection outbreaks in Australian pigs and may result in production benefits to the pork industry, reduced environmental microbial contamination and safer food.Read moreRead less
In touch with the environment: dissecting early tactile responses in plants. This project aims to identify the regulatory mechanisms that control touch-responses in plants. Although plants cannot relocate in the face of danger, they are able to sense mechanical manipulations from the environment. These could be caused by pathogens, herbivores, rain or even wind. This touch-responsiveness of plants is essential for pathogen resistance and for triggering architectural changes to overcome obstacles ....In touch with the environment: dissecting early tactile responses in plants. This project aims to identify the regulatory mechanisms that control touch-responses in plants. Although plants cannot relocate in the face of danger, they are able to sense mechanical manipulations from the environment. These could be caused by pathogens, herbivores, rain or even wind. This touch-responsiveness of plants is essential for pathogen resistance and for triggering architectural changes to overcome obstacles and prevent mechanical damage. Using a comprehensive tool set of genetics, genomics and proteomics, this project aims to identify the upstream regulators that control touch responses. Furthermore, it is expected to expand our understanding of the physiological impacts of touch-responses on growth and stress tolerance.Read moreRead less
Linkage Infrastructure, Equipment And Facilities - Grant ID: LE0989071
Funder
Australian Research Council
Funding Amount
$600,000.00
Summary
Phytosphere: new facilities for controlled manipulation of effects of climate change & airborne pollutants on disease epidemiology & plant performance. Western Australia is home to a range of world-leading plant science research groups. Establishing a world-class multi-purpose phytosphere facility in WA will enable these groups to remain at the forefront of their research fields and continue to attract high-profile international scientists and students. Such a facility will result in significant ....Phytosphere: new facilities for controlled manipulation of effects of climate change & airborne pollutants on disease epidemiology & plant performance. Western Australia is home to a range of world-leading plant science research groups. Establishing a world-class multi-purpose phytosphere facility in WA will enable these groups to remain at the forefront of their research fields and continue to attract high-profile international scientists and students. Such a facility will result in significant advancement of our understanding of the impact of climate change on plants through biotic stresses (e.g., disease epidemiology, plant-pathogen interactions) and in interaction with abiotic variables (e.g., CO2 concentrations, temperature, light intensity, humidity, moisture stress, airborne pollutants such as SO2), and allow crop yield optimisation in future environments.Read moreRead less
Origin of jaws - the greatest unsolved mystery of early vertebrate evolution. The 2008 discovery of an unborn embryo in the 380 million-year-old "Mother Fish" from the famous Gogo fossil deposit in NW Australia has attracted a collaboration of Australian, American and Chinese scientists to a new international collaboration. The team will study spectacular new fossils from central Australia and southern China, the oldest known back-boned animals with jaws and a hard skeleton. Innovative 3D X-ray ....Origin of jaws - the greatest unsolved mystery of early vertebrate evolution. The 2008 discovery of an unborn embryo in the 380 million-year-old "Mother Fish" from the famous Gogo fossil deposit in NW Australia has attracted a collaboration of Australian, American and Chinese scientists to a new international collaboration. The team will study spectacular new fossils from central Australia and southern China, the oldest known back-boned animals with jaws and a hard skeleton. Innovative 3D X-ray computer tomography, and the Australian synchrotron, will be used to investigate ancient cells and preserved soft tissue structures, to search for evidence that copulation and internal fertilization, as in modern mammals, might have originated when jaws first evolved. Read moreRead less
Phylogenomic assessment of conservation priorities in two biodiversity hotspots: the Pilbara and the Kimberley. This project applies new sequencing and analytical methods to measure how much unique genetic diversity is represented in current and planned reserves across two biodiversity hotspots – the Pilbara and Kimberley of north-west Australia. It combines university, museum and conservation agency researchers to improve ongoing conservation planning.
The origins of electroreception and nocturnality in the earliest known jawed vertebrates and their bearing on vertebrate diversification. This project aims to discover primary new data to pinpoint the timing, anatomical origins and phylogenetic significance when two key sensory systems first appeared in modern vertebrates: electroreception and specialised nocturnal vision. Such abilities today allow high diversity of vertebrates to co-exist within the same geographical range, for example on trop ....The origins of electroreception and nocturnality in the earliest known jawed vertebrates and their bearing on vertebrate diversification. This project aims to discover primary new data to pinpoint the timing, anatomical origins and phylogenetic significance when two key sensory systems first appeared in modern vertebrates: electroreception and specialised nocturnal vision. Such abilities today allow high diversity of vertebrates to co-exist within the same geographical range, for example on tropical reefs or rainforest communities, through careful temporal niche partitioning where reliance on other sensory systems takes over from vision and olfaction as the principal method of prey detection. This project aims to elucidate how the modern fish diversity was shaped by such significant early evolutionary events.Read moreRead less