Mechanisms of colour production and the evolution of animal signals. This project aims to reveal how diverse colours are produced in reptiles and the information these colours convey about individual health, condition and performance. The project evaluates how stress affects both pigment deposition and the nano-structure of cells and tissues, which together produce colour. By comparing similar colours generated by two entirely different classes of pigment (carotenoids and pteridines), this proje ....Mechanisms of colour production and the evolution of animal signals. This project aims to reveal how diverse colours are produced in reptiles and the information these colours convey about individual health, condition and performance. The project evaluates how stress affects both pigment deposition and the nano-structure of cells and tissues, which together produce colour. By comparing similar colours generated by two entirely different classes of pigment (carotenoids and pteridines), this project will provide new insights into the evolution of animal coloration, and will significantly enhance our understanding of pteridines, one of the most prevalent but least understood classes of pigment in vertebrates.Read moreRead less
Genome dynamics following plastid endosymbiosis. Plastid endosymbiosis events (enslavement of an algal cell inside of a host cell to form a plastid) are difficult to pinpoint because the genomic data required for a broad array of species are rarely available. Furthermore, the classical method used to infer endosymbiotic gene transfers is being criticised. This project will elucidate the origin of chlorarachniophyte and dinoflagellate plastids and characterise the genome dynamics following endosy ....Genome dynamics following plastid endosymbiosis. Plastid endosymbiosis events (enslavement of an algal cell inside of a host cell to form a plastid) are difficult to pinpoint because the genomic data required for a broad array of species are rarely available. Furthermore, the classical method used to infer endosymbiotic gene transfers is being criticised. This project will elucidate the origin of chlorarachniophyte and dinoflagellate plastids and characterise the genome dynamics following endosymbiosis. It uses densely sampled genome data obtained with high-throughput sequencing technologies. Simulation studies will be used to evaluate methods for inferring endosymbiotic gene transfer and alignment-free methods will be used to improve phylogenomic pipelines.Read moreRead less
Turning Selaginella into a model of plant reproductive evolution and ecology. The ancient genus Selaginella can reveal how natural selection shaped fundamental traits of plant reproduction like morphological differentiation of spores (a prerequisite for the evolution of seeds) and sexual division of reproductive investment. However, almost nothing is known of the ‘ecological theatre’ in which Selaginella evolves. This project will examine the worldwide phylogenetic pattern of reproductive traits ....Turning Selaginella into a model of plant reproductive evolution and ecology. The ancient genus Selaginella can reveal how natural selection shaped fundamental traits of plant reproduction like morphological differentiation of spores (a prerequisite for the evolution of seeds) and sexual division of reproductive investment. However, almost nothing is known of the ‘ecological theatre’ in which Selaginella evolves. This project will examine the worldwide phylogenetic pattern of reproductive traits in the genus, and combine field and greenhouse studies of Australian and Malaysian species in order to test fundamental ideas in evolutionary ecology such as the theory of sex allocation, and begin to establish the ecological and adaptive counterpart to Selaginella’s emerging role as a genomic model organism.Read moreRead less
Uncovering vertebrate lifespan biodiversity with whole genome sequencing. This project aims to integrate existing data on the genetic mechanisms of lifespan evolution in model systems with a novel combination of whole genome sequencing and comparative phylogenomics to reveal the common genomic signatures of lifespan evolution in vertebrates. Expected outcomes include a perspective on the evolution of lifespan, a topic of major health interest for Australia and the rest of the developed world. Th ....Uncovering vertebrate lifespan biodiversity with whole genome sequencing. This project aims to integrate existing data on the genetic mechanisms of lifespan evolution in model systems with a novel combination of whole genome sequencing and comparative phylogenomics to reveal the common genomic signatures of lifespan evolution in vertebrates. Expected outcomes include a perspective on the evolution of lifespan, a topic of major health interest for Australia and the rest of the developed world. This will provide significant benefits, such as long-term implications for aging research, with possible business applications. It will also increase Australia’s visibility and competitiveness in the developing field of bioinformatics.Read moreRead less
Coevolution of sundew bugs and sundews. This project aims to conduct a study of insect-plant interactions to determine if insects and plants coevolve or if they diversify by other evolutionary processes. Insect-plant coevolution is a hotly contested field in evolutionary biology. In Australia, a remarkable interaction exists between carnivorous plants and a group of bugs that steal the plant’s prey. This system offers a great opportunity to test competing coevolutionary theories through a combin ....Coevolution of sundew bugs and sundews. This project aims to conduct a study of insect-plant interactions to determine if insects and plants coevolve or if they diversify by other evolutionary processes. Insect-plant coevolution is a hotly contested field in evolutionary biology. In Australia, a remarkable interaction exists between carnivorous plants and a group of bugs that steal the plant’s prey. This system offers a great opportunity to test competing coevolutionary theories through a combination of historical and ecological approaches. The project expects to showcase the evolution and uniqueness of Australia’s native biota.Read moreRead less
Real-time phylogenetics for food-borne outbreak surveillance. The project aims to introduce, for the first time, real-time evolutionary analysis of agricultural pathogens so that outbreaks affecting crops and the food supply can be managed precisely and rapidly. An expert team will implement a large-scale data analytics framework in user-friendly software that integrates Australian infectious disease genomics data with global data. Underpinning this work are new theory and algorithms that apply ....Real-time phylogenetics for food-borne outbreak surveillance. The project aims to introduce, for the first time, real-time evolutionary analysis of agricultural pathogens so that outbreaks affecting crops and the food supply can be managed precisely and rapidly. An expert team will implement a large-scale data analytics framework in user-friendly software that integrates Australian infectious disease genomics data with global data. Underpinning this work are new theory and algorithms that apply Sequential Monte Carlo to update phylogenetic analyses continuously as new data arrives. Expected outcomes include new knowledge of statistical algorithms for evolutionary analysis, relevant to biological disciplines beyond infectious disease; and enhanced capacity for infectious disease analysis. Read moreRead less
Discovery Early Career Researcher Award - Grant ID: DE190100805
Funder
Australian Research Council
Funding Amount
$382,656.00
Summary
Phylogenetic methods for genome surveillance of microbial pathogens. This project aims to develop phylogenetic approaches to harness the potential evolution of bacterial and virus pathogens data and to improve early detection of infectious outbreaks. Genome surveillance programs consist in routine sequencing of particular organisms to track their evolution over time. Such programs currently exist for important bacterial and virus pathogens. This project expects to develop computational methods t ....Phylogenetic methods for genome surveillance of microbial pathogens. This project aims to develop phylogenetic approaches to harness the potential evolution of bacterial and virus pathogens data and to improve early detection of infectious outbreaks. Genome surveillance programs consist in routine sequencing of particular organisms to track their evolution over time. Such programs currently exist for important bacterial and virus pathogens. This project expects to develop computational methods to improve our understanding of pathogen outbreak emergence and infectious spread using genome data. This project will expand our knowledge base and research capability in the evolution and epidemiology of infectious agents, and aid in the prevention and control strategies of infectious disease benefiting the research priorities of food and health.Read moreRead less
Discovery Early Career Researcher Award - Grant ID: DE190101052
Funder
Australian Research Council
Funding Amount
$372,959.00
Summary
All you can eat: evolution of feeding in the largest animals on Earth. This project aims to establish how Baleen whales, the largest animals on Earth and major ecosystem engineers, evolved their signature filter-feeding strategy. Unlike other mammals, whales are toothless, and instead use a keratinous, comb-like sieve to filter vast amounts of small prey from seawater. Various approaches, including biomechanics, three-dimensional imaging, geochemistry and quantitative palaeobiology will unravel ....All you can eat: evolution of feeding in the largest animals on Earth. This project aims to establish how Baleen whales, the largest animals on Earth and major ecosystem engineers, evolved their signature filter-feeding strategy. Unlike other mammals, whales are toothless, and instead use a keratinous, comb-like sieve to filter vast amounts of small prey from seawater. Various approaches, including biomechanics, three-dimensional imaging, geochemistry and quantitative palaeobiology will unravel how and when filter feeding emerged, how it diversified over time, and whether its evolution correlated with past environmental change. The project is expected to reveal clues on how whales became one of the greatest ecological actors in the sea, and will benefit conservation by providing a glimpse into their future.Read moreRead less
Nowcasting outbreaks leveraging genomic and epidemiological data. This project aims to inform outbreak response planning by developing new models of infectious disease outbreaks. The project expects to generate new knowledge on the processes driving ongoing outbreaks including those of the novel coronavirus (COVID-19) and African swine fever by integrating the latest advances in Bayesian outbreak inference alongside unique simulation approaches. Expected outcomes should include a shift in how mo ....Nowcasting outbreaks leveraging genomic and epidemiological data. This project aims to inform outbreak response planning by developing new models of infectious disease outbreaks. The project expects to generate new knowledge on the processes driving ongoing outbreaks including those of the novel coronavirus (COVID-19) and African swine fever by integrating the latest advances in Bayesian outbreak inference alongside unique simulation approaches. Expected outcomes should include a shift in how models are developed and used to inform the response to outbreaks as they unfold. This should enable more rapid outbreak containment in Australia and overseas, leading to reduced impacts on public and animal health, and associated industries.Read moreRead less
Discovery Early Career Researcher Award - Grant ID: DE150101904
Funder
Australian Research Council
Funding Amount
$385,481.00
Summary
Interactions of sexual selection & ecological divergence during speciation. Understanding the processes driving speciation is fundamental to understanding how biodiversity is generated. The two main forces underlying speciation, ecological divergence and sexual selection, are well characterised, yet how they interact during the speciation process is remarkably poorly understood. This project aims to test hypotheses regarding how ecological divergence and sexual selection interact during speciati ....Interactions of sexual selection & ecological divergence during speciation. Understanding the processes driving speciation is fundamental to understanding how biodiversity is generated. The two main forces underlying speciation, ecological divergence and sexual selection, are well characterised, yet how they interact during the speciation process is remarkably poorly understood. This project aims to test hypotheses regarding how ecological divergence and sexual selection interact during speciation, from its inception to its completion. In doing so, this research aims to identify genomic regions underlying divergence in colour patterns, which are important for ecological and sexual interactions. Consequently, this project will significantly enhance our understanding of ecological and genetic mechanisms underlying speciation.Read moreRead less