Automated bioinformatic analysis of vertical and lateral gene transmission among microbial genomes. Genetic information is transmitted "vertically" from parents to offspring within species. Biologists have long assumed that this mechanism, extrapolated far into the past, explains the distribution of genes among genomes, thus the potential properties of all phenomes. But genome sequences show that some, perhaps many, genes have been transmitted "laterally" between species. We are building a uniqu ....Automated bioinformatic analysis of vertical and lateral gene transmission among microbial genomes. Genetic information is transmitted "vertically" from parents to offspring within species. Biologists have long assumed that this mechanism, extrapolated far into the past, explains the distribution of genes among genomes, thus the potential properties of all phenomes. But genome sequences show that some, perhaps many, genes have been transmitted "laterally" between species. We are building a unique automated computer-based system to find all instances of lateral transmission in all microbial genomes, using rigorous methods. Our results will be important both fundamentally and practically, e.g. in explaining sets and dynamics of phenomic traits, and quantifying background levels of "natural genetic engineering".Read moreRead less
Linkage Infrastructure, Equipment And Facilities - Grant ID: LE0989334
Funder
Australian Research Council
Funding Amount
$400,000.00
Summary
An integrated high-performance computational platform powering systems biology investigation. Systems biology is the study of the organism as a whole and provides a deeper understanding of biological processes than is possible by studying components separately. Recognised as essential for biological research, we propose to establish an advanced computational platform to study these processes at a systems level. Its hardware and specialised software will allow Australian researchers to examine co ....An integrated high-performance computational platform powering systems biology investigation. Systems biology is the study of the organism as a whole and provides a deeper understanding of biological processes than is possible by studying components separately. Recognised as essential for biological research, we propose to establish an advanced computational platform to study these processes at a systems level. Its hardware and specialised software will allow Australian researchers to examine complex pathways involved in animal and human health and disease, as well as in biotechnology and environmental processes. It will provide unique capabilities not currently available in Australia, and help Australian researchers remain internationally competitive in breakthrough science and frontier technologies.Read moreRead less
The genomic programming of complex organisms. The project will have far-reaching consequences in medicine, agriculture, biotechnology, engineering, information science and associated industries. It will provide a platform for the rationalization of genetic epidemiology and genetic improvement programs, the development of a wide range of new diagnostics and therapies, the development of new core technologies and practical approaches in genetics and genetic diversity, a framework for advanced gen ....The genomic programming of complex organisms. The project will have far-reaching consequences in medicine, agriculture, biotechnology, engineering, information science and associated industries. It will provide a platform for the rationalization of genetic epidemiology and genetic improvement programs, the development of a wide range of new diagnostics and therapies, the development of new core technologies and practical approaches in genetics and genetic diversity, a framework for advanced genetic engineering, the development of new principles and systems for information storage and transmission, and the design of artificial systems capable of self-referential assembly in other environments.Read moreRead less
Special Research Initiatives - Grant ID: SR0354610
Funder
Australian Research Council
Funding Amount
$10,000.00
Summary
Australian Bioinformatics Grid Network. OzBioGrid will be an open source, collaborative, bioinformatics environment supporting Australian biotechnology and life science researchers on the Grid. Researchers will be able to use distributed resources including databases, computational power and analytical tools, and to collaborate remotely, using customized work environments. With hubs in Brisbane, Canberra and Melbourne, and nodes elsewhere, OzBioGrid will build on Australia's high performance co ....Australian Bioinformatics Grid Network. OzBioGrid will be an open source, collaborative, bioinformatics environment supporting Australian biotechnology and life science researchers on the Grid. Researchers will be able to use distributed resources including databases, computational power and analytical tools, and to collaborate remotely, using customized work environments. With hubs in Brisbane, Canberra and Melbourne, and nodes elsewhere, OzBioGrid will build on Australia's high performance computing capacity. It will greatly enhance Australia's research capability by networking ARC and other centres of excellence, major national research facilities, independent researchers, biotechnology companies, bioinformatics research centres, public databases. It will be linked to bio-grid initiatives overseas. Read moreRead less
Special Research Initiatives - Grant ID: SR0566602
Funder
Australian Research Council
Funding Amount
$87,933.00
Summary
Development of a collaborative online environment and workbench for the investigation of protein folding. The investigation of protein folding – one the most important unsolved biological problems, is generating large amounts of complex data. This proposal aims to develop a highly collaborative content management system and interactive data mining tools that will allow the open exchange and analysis of protein folding data. A chief goal of this proposal is, by creating a rich informatics envir ....Development of a collaborative online environment and workbench for the investigation of protein folding. The investigation of protein folding – one the most important unsolved biological problems, is generating large amounts of complex data. This proposal aims to develop a highly collaborative content management system and interactive data mining tools that will allow the open exchange and analysis of protein folding data. A chief goal of this proposal is, by creating a rich informatics environment, to foster the exchange of ideas and rapid dissemination of new data across the international array of groups working in parallel on various aspects of the folding problem.Read moreRead less
Linkage Infrastructure, Equipment And Facilities - Grant ID: LE0882682
Funder
Australian Research Council
Funding Amount
$100,000.00
Summary
The Australasian Pollen and Spore Atlas. The results generated in this project will enhance Australian research capabilities across multiple disciplines by providing access to key knowledge of pollen and spores in our region. A unified approach to the archiving, presentation and accessibility to existing and evolving databases will provide a considerably improved context for identification and knowledge pooling of any given pollen or spore type. This will create a nexus for novel interactions be ....The Australasian Pollen and Spore Atlas. The results generated in this project will enhance Australian research capabilities across multiple disciplines by providing access to key knowledge of pollen and spores in our region. A unified approach to the archiving, presentation and accessibility to existing and evolving databases will provide a considerably improved context for identification and knowledge pooling of any given pollen or spore type. This will create a nexus for novel interactions between researchers and end users of these data from within and beyond Australia's borders.Read moreRead less
Parametric Brain Imaging via Modeling and Analysis of Electroencephalographic Signals. Parameters of brain function and physiology will be spatially imaged with high time resolution via their effects on electroencephalographic (EEG) signals, a form of imaging that is impossible with existing methods. This will be achieved by improving existing physiologically-based models of the generation of EEGs and developing analysis tools based on fitting of model predictions to multielectrode EEG data. T ....Parametric Brain Imaging via Modeling and Analysis of Electroencephalographic Signals. Parameters of brain function and physiology will be spatially imaged with high time resolution via their effects on electroencephalographic (EEG) signals, a form of imaging that is impossible with existing methods. This will be achieved by improving existing physiologically-based models of the generation of EEGs and developing analysis tools based on fitting of model predictions to multielectrode EEG data. The results will be used to probe spatiotemporal features of EEGs in normal subjects to explore the underlying fundamental mechanisms and to infer novel parameter variations of practical relevance.Read moreRead less
Special Research Initiatives - Grant ID: SR0567379
Funder
Australian Research Council
Funding Amount
$110,000.00
Summary
The Australasian Pollen and Spore Atlas. This proposal will enable online accessibility to the largest collection of pollen and spores information in the Australasian region that is currently located at the Australian National University. This will be a searchable database that is accessible over the web and suitable for professional as well as the technical novice involved in pollen and spore identification. Novel approaches to the federation of other smaller existing pollen and spores database ....The Australasian Pollen and Spore Atlas. This proposal will enable online accessibility to the largest collection of pollen and spores information in the Australasian region that is currently located at the Australian National University. This will be a searchable database that is accessible over the web and suitable for professional as well as the technical novice involved in pollen and spore identification. Novel approaches to the federation of other smaller existing pollen and spores databases will result in The Australasian Pollen and Spores Atlas. The Atlas will be a flexible and powerful knowledge management tool applicable to research development by a wide range of users including those within the archaeology, biology, geology, and airborne allergy specialists.Read moreRead less
What is the spatial and environmental distribution of phylogenetic diversity in the Australian biota? Almost nothing is known about the geographic distribution of phylogenetic relationships across Australia at fine resolutions of the order of tens of kilometres. The aim of this research is to map the spatial patterns of phylogenetic diversity in the Australian biota and identify possible environmental controls over them. We will analyse five disparate groups at a spatial resolution that is ord ....What is the spatial and environmental distribution of phylogenetic diversity in the Australian biota? Almost nothing is known about the geographic distribution of phylogenetic relationships across Australia at fine resolutions of the order of tens of kilometres. The aim of this research is to map the spatial patterns of phylogenetic diversity in the Australian biota and identify possible environmental controls over them. We will analyse five disparate groups at a spatial resolution that is orders of magnitude finer than previous research, analysing their relationship with possible environmental controls using advanced spatial analysis methods. The knowledge we will generate about the spatial distribution of these relationships is essential to understand and conserve Australia's unique biodiversity.Read moreRead less
Special Research Initiatives - Grant ID: SR0567460
Funder
Australian Research Council
Funding Amount
$85,000.00
Summary
Development of a collaborative environment for high throughput biology discovery pipelines. Modern biological science involves the parallel high-throughput investigation of many hundreds of different experimental targets. Traditional approaches for recording, analysing, mining and cross comparing experimental data are inadequate for conducting high throughput experiments. This proposal aims to develop new algorithms in the high throughput arena that will revolutionize biological discovery.