Microgenomics - a tool to dissect effects of salinity on gene expression in specific cell types of Arabidopsis and rice. This project will provide novel, fundamental understanding of the cell type-specific processes involved in salinity tolerance in higher plants. As such, it will impact on our understanding of a range of processes relevant to salinity tolerance, an area of great importance to Australian agriculture and environmental sustainability. The increased understanding arising from this ....Microgenomics - a tool to dissect effects of salinity on gene expression in specific cell types of Arabidopsis and rice. This project will provide novel, fundamental understanding of the cell type-specific processes involved in salinity tolerance in higher plants. As such, it will impact on our understanding of a range of processes relevant to salinity tolerance, an area of great importance to Australian agriculture and environmental sustainability. The increased understanding arising from this project will underpin future work to increase agricultural productivity and the quality of life for all in the Australian and international communities.Read moreRead less
Genome evolution & adaptation of the multinuclear wheat stripe rust fungus. Animals and plants package their genomes into a single nucleus within each cell. In contrast, millions of fungal species accommodate multiple nuclei containing individual haploid genomes. It is currently unknown what the evolutionary implications are for this unusual genome division into multiple nuclei. Here we explore the evolutionary consequences of genome division into multiple nuclei for the first time by applying c ....Genome evolution & adaptation of the multinuclear wheat stripe rust fungus. Animals and plants package their genomes into a single nucleus within each cell. In contrast, millions of fungal species accommodate multiple nuclei containing individual haploid genomes. It is currently unknown what the evolutionary implications are for this unusual genome division into multiple nuclei. Here we explore the evolutionary consequences of genome division into multiple nuclei for the first time by applying cutting edge genome biology tools and algorithms. The economically significant study system is the devastating wheat stripe rust fungus. This pathogen costs Australian farmers over $100 million a year. New understanding is expected to lead to better disease management, reduced fungicide applications, and increased yields.Read moreRead less
Investigating a new paradigm for plant-pathogen interactions; Identification of host-selective toxin proteins in the wheat pathogen Stagonospora nodorum. Stagonospora nodorum is a fungus that causes leaf and glume blotch disease on wheat. This disease alone causes $55 million dollars in yield losses per annum. Traditional breeding methods have yielded crops that are only mildly resistant leaving control of the disease to be worryingly reliant on fungicides. This project aims to identify and char ....Investigating a new paradigm for plant-pathogen interactions; Identification of host-selective toxin proteins in the wheat pathogen Stagonospora nodorum. Stagonospora nodorum is a fungus that causes leaf and glume blotch disease on wheat. This disease alone causes $55 million dollars in yield losses per annum. Traditional breeding methods have yielded crops that are only mildly resistant leaving control of the disease to be worryingly reliant on fungicides. This project aims to identify and characterise proteins that the fungus secretes to cause disease on wheat. By identifying these proteins, it is anticipated that strategies, both traditional and modern, could be employed to enable better control of the disease. This in turn would help provide a long term and secure supply of wheat and wheat based products to the community.Read moreRead less
Molecular mechanisms governing the role of calcium in aluminium toxicity and tolerance in plants. Aluminium is the most important yield-limiting factor in acid soils throughout the world. The problem of aluminium toxicity is aggravated by continuous acidification of arable land. Mechanisms of aluminium toxicity in plant cells are poorly understood. The present project seeks to elucidate the molecular basis of the interaction between intracellular calcium homeostasis and plasma membrane potential ....Molecular mechanisms governing the role of calcium in aluminium toxicity and tolerance in plants. Aluminium is the most important yield-limiting factor in acid soils throughout the world. The problem of aluminium toxicity is aggravated by continuous acidification of arable land. Mechanisms of aluminium toxicity in plant cells are poorly understood. The present project seeks to elucidate the molecular basis of the interaction between intracellular calcium homeostasis and plasma membrane potential in aluminium toxicity to plants. Knowledge of primary triggers of aluminium toxicity will pay off in a breeding programme aimed at selecting crop genotypes with increased resistance to aluminium toxicity.Read moreRead less
Improving yield through image-based structural analysis of cereals. Feeding an increasing world population under the threat of climate change requires the development of new plant varieties capable of delivering higher yield in more marginal conditions. This project will develop image-based technologies for accurately estimating plant yield which will improve the effectiveness of plant breeding processes.
Role of organic matter and soil biota in optimising crop nutrition in sustainable farming systems. Australian grain producers face increasing competition on the world market from countries with cheap production costs (China, Argentina, Brazil). This project will develop biological farming systems based on improving soil health and enhancing soil microflora and nutrient cycling. Western Australia and other states are currently defining certification guidelines for sustainable farming systems (inc ....Role of organic matter and soil biota in optimising crop nutrition in sustainable farming systems. Australian grain producers face increasing competition on the world market from countries with cheap production costs (China, Argentina, Brazil). This project will develop biological farming systems based on improving soil health and enhancing soil microflora and nutrient cycling. Western Australia and other states are currently defining certification guidelines for sustainable farming systems (including biological ones). Selling grain produced in certified biological farming system will attract market premium, therefore enhancing the position of Australian farmers. This project will produce fertiliser recommendation systems incorporating organic fertilisers, thus decreasing costs of production and maintaining clean and healthy environment.Read moreRead less
Modelling spatial and temporal dynamics of rhizosphere exudation. Existing crop root systems are poorly suited to Australian soils with low nutrient availability. Using a simulation model to develop computer-aided design of 3-D root structure and function, tailored to particular environments, this project will enhance breeding for increased nutrient-use efficiency.
Long noncoding RNAs and their regulatory roles in epigenetic control of gene expression in plants. Epigenetic control of gene expression plays a critical role in development, environmental adaptation, stress response and disease resistance in plants, but its molecular basis remains largely unknown. The proposed study should contribute to the emerging field of epigenetics by discovering new regulatory noncoding RNAs involved in epigenetic mechanisms in plants. These new discoveries could potentia ....Long noncoding RNAs and their regulatory roles in epigenetic control of gene expression in plants. Epigenetic control of gene expression plays a critical role in development, environmental adaptation, stress response and disease resistance in plants, but its molecular basis remains largely unknown. The proposed study should contribute to the emerging field of epigenetics by discovering new regulatory noncoding RNAs involved in epigenetic mechanisms in plants. These new discoveries could potentially provide new opportunities and platforms for improving the performance, yield and quality of crop plants. The proposed study is therefore consistent with the national research priority goals such as breakthrough science, frontier technologies and promoting an innovation culture.Read moreRead less
Explaining the interactions between drought and fertiliser use efficiency using tracing and imaging techniques. With climate change, Australian agriculture is faced with periods of increasing drought and changing rainfall patterns. At the same time, Australian farmers are faced with increasing costs of fertiliser inputs (their largest variable input cost), yet have little information on how they should change their nutrient management programs to suit the changing climatic conditions. This proje ....Explaining the interactions between drought and fertiliser use efficiency using tracing and imaging techniques. With climate change, Australian agriculture is faced with periods of increasing drought and changing rainfall patterns. At the same time, Australian farmers are faced with increasing costs of fertiliser inputs (their largest variable input cost), yet have little information on how they should change their nutrient management programs to suit the changing climatic conditions. This project aims to determine the effect of drought and rainfall patterns on the efficiency of fertiliser use by crops, through examination of the effects of soil moisture conditions on the interaction between soil and added fertilisers. Read moreRead less
Soft solids rheology and filled elastomeric networks. Elastomeric networks that have imbedded particles are considerably more difficult to model than unfilled networks because the imbedded particles deform the trajectory of the chains. Any treatment must incorporate this dual nature of the network. Our work will address this important issue with particular reference to two important materials - liquid crystalline elastomers and bread dough. We aim to produce an accurate mathematical description ....Soft solids rheology and filled elastomeric networks. Elastomeric networks that have imbedded particles are considerably more difficult to model than unfilled networks because the imbedded particles deform the trajectory of the chains. Any treatment must incorporate this dual nature of the network. Our work will address this important issue with particular reference to two important materials - liquid crystalline elastomers and bread dough. We aim to produce an accurate mathematical description of filled soft viscoelastic solids, which include compressibility and yielding - two important new features.Read moreRead less