Designing microarray experiments. Microarrays are powerful tools for surveying the expression levels of many thousands of genes simultaneously. They belong to the new genomics technologies which have important applications in the biological, pharmaceutical and agricultural sciences. There are many sources of uncertainty in microarray experimentation and good statistical designs are essential for ensuring that the effects of interest to scientists are accurately and precisely measured. This Pr ....Designing microarray experiments. Microarrays are powerful tools for surveying the expression levels of many thousands of genes simultaneously. They belong to the new genomics technologies which have important applications in the biological, pharmaceutical and agricultural sciences. There are many sources of uncertainty in microarray experimentation and good statistical designs are essential for ensuring that the effects of interest to scientists are accurately and precisely measured. This Project will develop novel designs for microarray experiments and focus on the advancement of topics crucial to Australia's success in technological research.
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Discovery Early Career Researcher Award - Grant ID: DE200100200
Funder
Australian Research Council
Funding Amount
$418,398.00
Summary
Next generation causal inference methods for biological data. This project aims to develop next generation causal inference methods for analysing biological data especially the single cell sequencing data and their applications in cell biology. Although Artificial Intelligence and Statistical Machine Learning have been applied successfully in many fields, including biological research, there is still a serious lack of methods for interpreting and reasoning about the mechanism of biological syste ....Next generation causal inference methods for biological data. This project aims to develop next generation causal inference methods for analysing biological data especially the single cell sequencing data and their applications in cell biology. Although Artificial Intelligence and Statistical Machine Learning have been applied successfully in many fields, including biological research, there is still a serious lack of methods for interpreting and reasoning about the mechanism of biological systems, the ultimate goal of research in many areas. Efficient data-driven causality discovery approaches developed by the project will be a timely and significant contribution to the knowledge of biology and statistics as well as the battle against health threats.
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Saddlepoint approximation, likelihood analysis and ancestral graphs for strong and weak natural selection, genetic drift and population subdivision. Building new research strength in theoretical population genetics and related statistical techniques will enhance Australia's capability in harnessing the power of post-genomic information. Sophisticated statistical techniques that make smart use of genetic data are being developed in this project. The extent to which natural selection and migrati ....Saddlepoint approximation, likelihood analysis and ancestral graphs for strong and weak natural selection, genetic drift and population subdivision. Building new research strength in theoretical population genetics and related statistical techniques will enhance Australia's capability in harnessing the power of post-genomic information. Sophisticated statistical techniques that make smart use of genetic data are being developed in this project. The extent to which natural selection and migration affect current genetic polymorphism on a population level can be quantified using these new methods. New modeling provides a rigorous foundation with which to construct inference techniques currently beyond computational approaches to the data. Assessing selective effects on genetic mutations associated with human disease will be a consequence of this new statistical methodology.Read moreRead less
Modelling mean and dispersion using fixed and random effects. The aims of the project are to develop methods for joint mean and dispersion modelling using fixed and random effects, in the generalized linear models context and for Gaussian longitudinal data. The significance is the more efficient, precise and appropriate analysis of data arising from many areas of application. The expected outcomes are therefore better methods of analysis, software to carry the analyses out, and potentially impor ....Modelling mean and dispersion using fixed and random effects. The aims of the project are to develop methods for joint mean and dispersion modelling using fixed and random effects, in the generalized linear models context and for Gaussian longitudinal data. The significance is the more efficient, precise and appropriate analysis of data arising from many areas of application. The expected outcomes are therefore better methods of analysis, software to carry the analyses out, and potentially important results in applications.Read moreRead less
Advanced mathematical models and methods for a randomly-varying world. This project aims to develop advanced stochastic models and novel techniques, to analytically obtain performance measures and to efficiently simulate the time evolution. This project also plans to apply new models and methods to address important problems in ecology and epidemiology. The outputs of this project will advance knowledge in mathematics as well as in the intended application areas, including ultimately in improved ....Advanced mathematical models and methods for a randomly-varying world. This project aims to develop advanced stochastic models and novel techniques, to analytically obtain performance measures and to efficiently simulate the time evolution. This project also plans to apply new models and methods to address important problems in ecology and epidemiology. The outputs of this project will advance knowledge in mathematics as well as in the intended application areas, including ultimately in improved understanding, modelling, and tracking of the spread of diseases.Read moreRead less
Computational methods for population-size-dependent branching processes. Branching processes are the primary mathematical tool used to model populations that evolve randomly in time. Most key results in the theory are derived under the simplifying assumption that individuals reproduce and die independently of each other. However, this assumption fails in most real-life situations, in particular when the environment has limited resources or when the habitat has a restricted capacity. This project ....Computational methods for population-size-dependent branching processes. Branching processes are the primary mathematical tool used to model populations that evolve randomly in time. Most key results in the theory are derived under the simplifying assumption that individuals reproduce and die independently of each other. However, this assumption fails in most real-life situations, in particular when the environment has limited resources or when the habitat has a restricted capacity. This project aims to develop novel and effective algorithmic techniques and statistical methods for a class of branching processes with dependences. We will use these results to study significant problems in the conservation of endangered island bird populations in Oceania, and to help inform their conservation management.Read moreRead less
Operator-Analytic Methods in Telecommunication Systems. Many systems in information technology and telecommunications evolve under conditions of uncertainty. In this context, mathematical modelling is an essential component of the design process. We shall provide techniques for analysing a class of mathematical models, called operator-analytic models, which can be used to study many of the above-mentioned systems, such as the Internet. This project will deliver efficient numerical algorithms tha ....Operator-Analytic Methods in Telecommunication Systems. Many systems in information technology and telecommunications evolve under conditions of uncertainty. In this context, mathematical modelling is an essential component of the design process. We shall provide techniques for analysing a class of mathematical models, called operator-analytic models, which can be used to study many of the above-mentioned systems, such as the Internet. This project will deliver efficient numerical algorithms that will make possible practical analysis of operator-analytic models.Read moreRead less
Discovery Early Career Researcher Award - Grant ID: DE160100690
Funder
Australian Research Council
Funding Amount
$373,316.00
Summary
Mathematical modelling of the early stages of multicellular evolution. This project aims to develop new mathematical methodology to understand the early stages of the evolution of multicellular organisms from unicellular ancestors. This is the best known example of the creation of a new level of biological organisation. However, the early stages of this transition are poorly understood, especially how early groups of cells came to possess Darwinian characteristics, which then allows natural sele ....Mathematical modelling of the early stages of multicellular evolution. This project aims to develop new mathematical methodology to understand the early stages of the evolution of multicellular organisms from unicellular ancestors. This is the best known example of the creation of a new level of biological organisation. However, the early stages of this transition are poorly understood, especially how early groups of cells came to possess Darwinian characteristics, which then allows natural selection to act on them. It is anticipated that the models produced will be used to give the first mechanistic account of this intrinsically stochastic, multi-level, phenomenon. This may lead to new insights into the emergence and subsequent evolution of simple multicellular life cycles and early forms of development.Read moreRead less
ARC Centre of Excellence for Mathematical and Statistical Frontiers of Big Data, Big Models, New Insights. In today's world, massive amounts of data in a variety of forms are collected daily from a multitude of sources. Many of the resulting data sets have the potential to make vital contributions to society, business and government, as well as impact on international developments, but are so large or complex that they are difficult to process and analyse using traditional tools. The aim of this ....ARC Centre of Excellence for Mathematical and Statistical Frontiers of Big Data, Big Models, New Insights. In today's world, massive amounts of data in a variety of forms are collected daily from a multitude of sources. Many of the resulting data sets have the potential to make vital contributions to society, business and government, as well as impact on international developments, but are so large or complex that they are difficult to process and analyse using traditional tools. The aim of this Centre is to create innovative mathematical and statistical models that can uncover the knowledge concealed within the size and complexity of these big data sets, with a focus on using the models to deliver insight into problems vital to the Centre's Collaborative Domains: Healthy People, Sustainable Environments and Prosperous Societies.Read moreRead less
Doubly Stochastic Matrices & The Hamiltonian Cycle Problem. The classical hard problem of determining whether a given graph possesses a Hamiltonian cycle contains the essential difficulty of the famous 'Travelling Salesman Problem'. A characterisation of this difficulty in terms of variability of returns (to the initial state) in a controlled stochastic process will be a significant conceptual advance with repercussions in a number of fields including optimisation and theoretical computer scien ....Doubly Stochastic Matrices & The Hamiltonian Cycle Problem. The classical hard problem of determining whether a given graph possesses a Hamiltonian cycle contains the essential difficulty of the famous 'Travelling Salesman Problem'. A characterisation of this difficulty in terms of variability of returns (to the initial state) in a controlled stochastic process will be a significant conceptual advance with repercussions in a number of fields including optimisation and theoretical computer science. Algorithmic advances exploiting such a characterisation will significantly contribute to existing technologies for solving problems in applications ranging from logistics to cryptography. Since TSP describes certain efficient ways of routing its applicability to information networks is clear.Read moreRead less