Optimising disease surveillance to support decision-making. COVID-19 has demonstrated the critical role of epidemic data and analytics in guiding government response to pandemic threats, reducing disease and saving lives. The demand for epidemic analytics for response to threats of national significance will only grow. The goals of this project are to 1) determine the combination(s) of surveillance methods that provide the most useful data for epidemic analysis and 2) translate these findings in ....Optimising disease surveillance to support decision-making. COVID-19 has demonstrated the critical role of epidemic data and analytics in guiding government response to pandemic threats, reducing disease and saving lives. The demand for epidemic analytics for response to threats of national significance will only grow. The goals of this project are to 1) determine the combination(s) of surveillance methods that provide the most useful data for epidemic analysis and 2) translate these findings into the blueprint for a next-generation infectious disease surveillance system for Australia. We will use a simulation-evaluation approach, coupling methods from infectious disease modelling with those from information theory optimal design. Outcomes will enable more tailored and effective pandemic response.Read moreRead less
The structure and dynamics of social contact for human disease transmission models. The methodological advances of this project will enable new insights in important social research. They will not only add significantly to national capacity in the modelling of complex social systems but they will also yield practical scientific outcomes in a significant policy domain in Australia and overseas. In Australia, response to diseases such as HIV, HCV and TB need new approaches, and the threat of pan ....The structure and dynamics of social contact for human disease transmission models. The methodological advances of this project will enable new insights in important social research. They will not only add significantly to national capacity in the modelling of complex social systems but they will also yield practical scientific outcomes in a significant policy domain in Australia and overseas. In Australia, response to diseases such as HIV, HCV and TB need new approaches, and the threat of pandemic influenza is significant. Read moreRead less
Estimation of non-additive genetic variance for complex traits using genome-wide single nucleotide polymorphyisms and sequence data. Finding genes for traits of importance in agriculture, ecology and human health depends on understanding the genetic basis of these traits. This project will investigate whether variation in traits in humans, cattle and wild sheep are influenced by gene-gene interactions.
The genetic architecture and evolution of quantitative traits. Most important traits are controlled by many genes and by the environment, however there is little knowledge of how many genes are involved in these complex traits and what their effects are. This project will describe the number of genes and their effects for complex traits in humans and livestock and explain how these genes evolve.
Revealing the evolutionary and ecological dynamics of avian influenza virus. This project aims to understand how avian influenza virus (AIV) emerges, evolves and spreads in wild birds. AIV has the potential to devastate the poultry industry and cause human pandemics, but the factors that shape the genetic diversity of AIV in its wild bird reservoir are poorly understood. The project plans to combine genomic, ecological and phylogenetic approaches to reveal key aspects of AIV evolution, as well a ....Revealing the evolutionary and ecological dynamics of avian influenza virus. This project aims to understand how avian influenza virus (AIV) emerges, evolves and spreads in wild birds. AIV has the potential to devastate the poultry industry and cause human pandemics, but the factors that shape the genetic diversity of AIV in its wild bird reservoir are poorly understood. The project plans to combine genomic, ecological and phylogenetic approaches to reveal key aspects of AIV evolution, as well as the risk for future viral emergence. Using sampling sites in Australia and Antarctica, it plans to investigate AIV diversity, the evolutionary dynamics of AIV in wild birds and poultry, and the role played by environmental transmission in AIV ecology.Read moreRead less
Stochastic methods for studying models of infection and abundance. The outcomes of this project will have immense benefit to Australia. They impact upon two areas of national importance, namely ensuring an environmentally sustainable Australia, and safeguarding Australia. In particular, the project will provide models, methodology and optimal strategies for sustainable use of Australia's biodiversity, for protecting Australia from invasive diseases and pests, and for protecting Australia from te ....Stochastic methods for studying models of infection and abundance. The outcomes of this project will have immense benefit to Australia. They impact upon two areas of national importance, namely ensuring an environmentally sustainable Australia, and safeguarding Australia. In particular, the project will provide models, methodology and optimal strategies for sustainable use of Australia's biodiversity, for protecting Australia from invasive diseases and pests, and for protecting Australia from terrorism and crime. Special focus will be given to the control of invasive species, the control of emerging infections, and the optimal allocation of resources. The current risks posed by invasive diseases and pests, and the alarming rate of destruction of biodiversity, warrant urgent funding of this project.Read moreRead less
The genomics of adaptation in Wolbachia pipientis, an emerging biocontrol agent. Australians are increasingly exposed to insect-transmitted diseases such as dengue fever. Novel biocontrol methods using the bacterium Wolbachia aim to control insect populations to reduce disease transmission. Our research will be the first to investigate genomic variation and the process of adaptation to new insect hosts in Wolbachia. The novel data and understanding of evolutionary processes we generate will be c ....The genomics of adaptation in Wolbachia pipientis, an emerging biocontrol agent. Australians are increasingly exposed to insect-transmitted diseases such as dengue fever. Novel biocontrol methods using the bacterium Wolbachia aim to control insect populations to reduce disease transmission. Our research will be the first to investigate genomic variation and the process of adaptation to new insect hosts in Wolbachia. The novel data and understanding of evolutionary processes we generate will be critical for screening bacterial biocontrol candidates and designing biocontrol release strategies. It will also strengthen the position of Australian research as a world-leader in the fusion of post-genomics and applied microbiology. Read moreRead less
Genetic architecture and evolution of complex traits across populations. Most human traits have a genetic component and display substantial diversity within and among populations. How natural selection changes and maintains genetic variation in human traits is a long-standing question in evolution that the proposed project aims to answer. Using innovative statistical methods and largest genomic “big” datasets ever across populations of different ancestral backgrounds, this project expects to gen ....Genetic architecture and evolution of complex traits across populations. Most human traits have a genetic component and display substantial diversity within and among populations. How natural selection changes and maintains genetic variation in human traits is a long-standing question in evolution that the proposed project aims to answer. Using innovative statistical methods and largest genomic “big” datasets ever across populations of different ancestral backgrounds, this project expects to generate new knowledge on the roles of natural selection in shaping the genetic variation in traits and identify key factors that drive the differentiation of human populations. These outcomes will significantly improve our understanding on the evolution of human traits and adaptation of populations to changing environments.Read moreRead less
Using AI to reveal the true extent & context of alcohol exposure in videos. This project aims to extend an artificial intelligence algorithm to automatically identify and quantify alcohol prevalence in videos. The project is expected to generate significant new knowledge about alcohol’s exposure in these videos’ social, emotional, and environmental contexts. The expected outcomes include a more efficient and automated method of revealing alcohol pervasiveness and its context in the 1000 most wat ....Using AI to reveal the true extent & context of alcohol exposure in videos. This project aims to extend an artificial intelligence algorithm to automatically identify and quantify alcohol prevalence in videos. The project is expected to generate significant new knowledge about alcohol’s exposure in these videos’ social, emotional, and environmental contexts. The expected outcomes include a more efficient and automated method of revealing alcohol pervasiveness and its context in the 1000 most watched videos in Australia, making costly manual coding redundant. Anticipated benefits include enabling governments to better monitor compliance to alcohol product placement guidelines and increased public awareness of the frequency and harmful effects of being exposed to alcohol in videos.Read moreRead less
Mechanisms of virus transport in indoor environments. The socio-economic benefits to Australia from the project will include the developed and validated model for quantification of virus spread and survival through aerosolation processes, which will become an important tool for: (i) prediction of the pathways of virus spread in indoor environment, and (ii) developing future directions for management and control for prevention or minimization the likelihood of human infections. The ultimate econo ....Mechanisms of virus transport in indoor environments. The socio-economic benefits to Australia from the project will include the developed and validated model for quantification of virus spread and survival through aerosolation processes, which will become an important tool for: (i) prediction of the pathways of virus spread in indoor environment, and (ii) developing future directions for management and control for prevention or minimization the likelihood of human infections. The ultimate economic benefit of this research will be reduction in health care costs and lost productivity. The research will also place Australia in the forefront of international progress and race towards toward better methods for virus spread prevention. Read moreRead less