Discovery Early Career Researcher Award - Grant ID: DE170100759
Funder
Australian Research Council
Funding Amount
$372,000.00
Summary
Trans-omic networks: A machine learning and omics integration approach. This project aims to map and model ‘trans-omic’ networks that cut through omic layers using machine learning and multi-omic data integration. Global networks regulated by molecular programs, including signalling, epigenetic, transcriptional and translational regulation, orchestrate cellular functions. Technological advances can profile these molecular programmes, giving rise to various ‘omics’. However, data generated from e ....Trans-omic networks: A machine learning and omics integration approach. This project aims to map and model ‘trans-omic’ networks that cut through omic layers using machine learning and multi-omic data integration. Global networks regulated by molecular programs, including signalling, epigenetic, transcriptional and translational regulation, orchestrate cellular functions. Technological advances can profile these molecular programmes, giving rise to various ‘omics’. However, data generated from each omic layer are predominantly analysed separately owing to their heterogeneity. To understand cellular functions in its entirety, it is essential to interpret omic data across multiple omic layers. Applying this project’s methods is expected to improve use of omics data and fundamental molecular programs.Read moreRead less
Linkage Infrastructure, Equipment And Facilities - Grant ID: LE120100224
Funder
Australian Research Council
Funding Amount
$250,000.00
Summary
Multi-mode fluorescence microscope for visualising the dynamics of cellular processes at the single-molecule level. Fluorescence is the emission of light by a substance that has absorbed light of a different wavelength. This fluorescence microscopy facility will allow the visualisation of the dynamic processes that define life at the molecular level. This insight will help us understand cellular function and how it is impaired in various diseases including cancer and neurodegenerative disorders ....Multi-mode fluorescence microscope for visualising the dynamics of cellular processes at the single-molecule level. Fluorescence is the emission of light by a substance that has absorbed light of a different wavelength. This fluorescence microscopy facility will allow the visualisation of the dynamic processes that define life at the molecular level. This insight will help us understand cellular function and how it is impaired in various diseases including cancer and neurodegenerative disorders such as Parkinson’s and Alzheimer’s disease.Read moreRead less
Uncovering novel metabolic processes in eukaryotic cells. This project aims to investigate the origin and function of the large number of chemically undefined metabolites that occur in all cells. The project will utilise advanced analytical techniques, as well as computational and genetic approaches, to characterise the chemical structures of these metabolites and identity the enzymes involved in their synthesis and degradation. It will provide new information on the metabolic capacity of eukary ....Uncovering novel metabolic processes in eukaryotic cells. This project aims to investigate the origin and function of the large number of chemically undefined metabolites that occur in all cells. The project will utilise advanced analytical techniques, as well as computational and genetic approaches, to characterise the chemical structures of these metabolites and identity the enzymes involved in their synthesis and degradation. It will provide new information on the metabolic capacity of eukaryotic cells and allow the generation of more accurate models of metabolism. These outcomes have important biotechnology applications and will identify metabolic processes that underpin normal and disease states in animals and human cells.Read moreRead less
A new chemotherapeutic target from Leishmania SPP. Understanding and inhibiting CYP61LD, a sterol C22 desaturase. Leishamniasis is a debilitating and often fatal disease that is caused by a parasite, Leishmania sp., which is increasing its range to include Australia. This project aims to explore possible chemotherapeutics for the disease which inhibit a particular and unique enzyme the organism uses to synthesise the sterols it requires to live.
Linkage Infrastructure, Equipment And Facilities - Grant ID: LE210100166
Funder
Australian Research Council
Funding Amount
$626,800.00
Summary
High-throughput camera system for biological cryo-electron microscopy. Visualising the structure of biological macromolecules such as proteins and other subcellular components is critical to understand the fundamentals of life. The integration of the Gatan K3 high-throughput camera system with one of the most advanced cryo-electron microscopy facilities in Australia and the Southern Hemisphere will transform the capacity of Australian researchers to study the world around us at the molecular det ....High-throughput camera system for biological cryo-electron microscopy. Visualising the structure of biological macromolecules such as proteins and other subcellular components is critical to understand the fundamentals of life. The integration of the Gatan K3 high-throughput camera system with one of the most advanced cryo-electron microscopy facilities in Australia and the Southern Hemisphere will transform the capacity of Australian researchers to study the world around us at the molecular detail needed to advance innovative research. The addition of this equipment to the University of Wollongong's research facility Molecular Horizons will result in a step change in the areas of bionanotechnology, advanced manufacturing, diagnostics, and many other areas at the interface of biology, chemistry and physics.Read moreRead less
Metalloproteomics: A new piece of the systems biology puzzle. Systems biology uses advanced analytical technology to study the complex chemistry of the living cell. Many cellular functions are the result of chemical reactions involving metalloproteins, which are notoriously difficult to study due to the weak bonds between metal and protein that is not normally amenable to traditional proteomic approaches. In partnership with the leading analytical manufacturer Agilent Technologies, this project ....Metalloproteomics: A new piece of the systems biology puzzle. Systems biology uses advanced analytical technology to study the complex chemistry of the living cell. Many cellular functions are the result of chemical reactions involving metalloproteins, which are notoriously difficult to study due to the weak bonds between metal and protein that is not normally amenable to traditional proteomic approaches. In partnership with the leading analytical manufacturer Agilent Technologies, this project aims to adapt and apply advanced mass spectrometry to the study of metalloproteins, developing new methods for studying hundreds of molecules in single experiments. Using the C. elegans model organism the project aims to showcase the importance of metals in biology and develop new solutions for the $2.9 billion proteomics industry.Read moreRead less
Imaging the action of antimicrobial peptides in living cells. The purpose of this project to use a special magnifying glass to watch molecules invading and killing cells. The outcome will be to identify the mechanism of cell killing to help in the future design of better antibiotics.
Discovery Early Career Researcher Award - Grant ID: DE180100080
Funder
Australian Research Council
Funding Amount
$365,058.00
Summary
Examining lipid transport by direct visualisation and quantification. This project aims to investigate the least understood aspect of plasma triglyceride metabolism; mechanisms of transport across capillary endothelial cells. This transport regulates plasma triglyceride levels, which are an important factor in determining risk for coronary diseases. An improved understanding of these mechanisms will lead in the long term to better understandings of both heart failure and atherosclerotic heart di ....Examining lipid transport by direct visualisation and quantification. This project aims to investigate the least understood aspect of plasma triglyceride metabolism; mechanisms of transport across capillary endothelial cells. This transport regulates plasma triglyceride levels, which are an important factor in determining risk for coronary diseases. An improved understanding of these mechanisms will lead in the long term to better understandings of both heart failure and atherosclerotic heart diseases.Read moreRead less
Quantifying reactive species in biological systems. This project aims to discover how reactive oxygen and nitrogen species affect cell function, oxidative stress and cell dysfunction. The underlying mechanisms are often unknown because methods to measure reactive species and associated oxidative stress are inadequate. This project will synthesise multi-purpose probes and combine these with mass spectrometry-based analytics and mathematical modelling. This will allow concurrent quantification of ....Quantifying reactive species in biological systems. This project aims to discover how reactive oxygen and nitrogen species affect cell function, oxidative stress and cell dysfunction. The underlying mechanisms are often unknown because methods to measure reactive species and associated oxidative stress are inadequate. This project will synthesise multi-purpose probes and combine these with mass spectrometry-based analytics and mathematical modelling. This will allow concurrent quantification of reactive species in specific cellular compartments in a time-dependent manner that reflects their intricate interaction and metabolism in complex biological systems. This project could clarify whether and how reactive species affect cell function, ageing and disease.Read moreRead less
Linkage Infrastructure, Equipment And Facilities - Grant ID: LE200100117
Funder
Australian Research Council
Funding Amount
$1,275,000.00
Summary
A platform consortium for integrated 'systems-omics' research. The proposal aims to establish a multi-institutional integrated ‘systems-omics’ platform across two of Victoria’s leading research universities, and associated research institutes. The platform will consist of two cutting edge ultra-high resolution mass spectrometers (i) a Thermo Scientific Orbitrap Fusion LUMOS for rapid and comprehensive metabolomic profiling and detailed structural characterization, located at La Trobe University ....A platform consortium for integrated 'systems-omics' research. The proposal aims to establish a multi-institutional integrated ‘systems-omics’ platform across two of Victoria’s leading research universities, and associated research institutes. The platform will consist of two cutting edge ultra-high resolution mass spectrometers (i) a Thermo Scientific Orbitrap Fusion LUMOS for rapid and comprehensive metabolomic profiling and detailed structural characterization, located at La Trobe University, and (ii) a Thermo Scientific Orbitrap Q Exactive HFX for high-throughput, deep and reproducible quantitative proteome analysis, located at the University of Melbourne.This platform will address applications across the agri-biosciences, medicinal agriculture and fundamental biomedical sciences sectors.Read moreRead less