Discovery Early Career Researcher Award - Grant ID: DE170100759
Funder
Australian Research Council
Funding Amount
$372,000.00
Summary
Trans-omic networks: A machine learning and omics integration approach. This project aims to map and model ‘trans-omic’ networks that cut through omic layers using machine learning and multi-omic data integration. Global networks regulated by molecular programs, including signalling, epigenetic, transcriptional and translational regulation, orchestrate cellular functions. Technological advances can profile these molecular programmes, giving rise to various ‘omics’. However, data generated from e ....Trans-omic networks: A machine learning and omics integration approach. This project aims to map and model ‘trans-omic’ networks that cut through omic layers using machine learning and multi-omic data integration. Global networks regulated by molecular programs, including signalling, epigenetic, transcriptional and translational regulation, orchestrate cellular functions. Technological advances can profile these molecular programmes, giving rise to various ‘omics’. However, data generated from each omic layer are predominantly analysed separately owing to their heterogeneity. To understand cellular functions in its entirety, it is essential to interpret omic data across multiple omic layers. Applying this project’s methods is expected to improve use of omics data and fundamental molecular programs.Read moreRead less
Discovery Early Career Researcher Award - Grant ID: DE220100964
Funder
Australian Research Council
Funding Amount
$443,869.00
Summary
Statistical approaches for spatial genomics at single cell resolution. Cells cooperate to form complex, dynamic and varied tissue structures. This project aims to develop statistical and computational approaches to analyse spatial genomics data, a novel technology that retains vital spatial information at single cell resolution while detecting RNA molecules for hundreds of genes. Observing the molecular activity of cells in their spatial context is critical for tackling key biological questions, ....Statistical approaches for spatial genomics at single cell resolution. Cells cooperate to form complex, dynamic and varied tissue structures. This project aims to develop statistical and computational approaches to analyse spatial genomics data, a novel technology that retains vital spatial information at single cell resolution while detecting RNA molecules for hundreds of genes. Observing the molecular activity of cells in their spatial context is critical for tackling key biological questions, such as how tumour cells behave during malignancy or how stem cells determine their fate. Expected outcomes also include techniques to fully harmonise spatial and non-spatial genomics datasets, and methods toward understanding the complex relationships among cells in their environment, revealing novel cell biology.Read moreRead less
Linkage Infrastructure, Equipment And Facilities - Grant ID: LE120100224
Funder
Australian Research Council
Funding Amount
$250,000.00
Summary
Multi-mode fluorescence microscope for visualising the dynamics of cellular processes at the single-molecule level. Fluorescence is the emission of light by a substance that has absorbed light of a different wavelength. This fluorescence microscopy facility will allow the visualisation of the dynamic processes that define life at the molecular level. This insight will help us understand cellular function and how it is impaired in various diseases including cancer and neurodegenerative disorders ....Multi-mode fluorescence microscope for visualising the dynamics of cellular processes at the single-molecule level. Fluorescence is the emission of light by a substance that has absorbed light of a different wavelength. This fluorescence microscopy facility will allow the visualisation of the dynamic processes that define life at the molecular level. This insight will help us understand cellular function and how it is impaired in various diseases including cancer and neurodegenerative disorders such as Parkinson’s and Alzheimer’s disease.Read moreRead less
Molecular mechanisms of mechanosensation and shape regulation in cells. This project aims to explore how cells physically sense and respond to the surrounding environment on a molecular level. Physical distortion of erythrocytes doubles their glucose consumption and increases cation membrane flux five-fold. This mechanism involves opening of the mechanosenstive ion channel Piezo1. This project will include a kinetic description of these phenomena, with a goal to establish a predictive mathematic ....Molecular mechanisms of mechanosensation and shape regulation in cells. This project aims to explore how cells physically sense and respond to the surrounding environment on a molecular level. Physical distortion of erythrocytes doubles their glucose consumption and increases cation membrane flux five-fold. This mechanism involves opening of the mechanosenstive ion channel Piezo1. This project will include a kinetic description of these phenomena, with a goal to establish a predictive mathematical model of the regulation of cell-shape and volume. The project will provide an understanding of mechanisms operating when cells and tissues are succumbing to trauma and invasion, and how to control these processes on a molecular level.Read moreRead less
Linkage Infrastructure, Equipment And Facilities - Grant ID: LE210100166
Funder
Australian Research Council
Funding Amount
$626,800.00
Summary
High-throughput camera system for biological cryo-electron microscopy. Visualising the structure of biological macromolecules such as proteins and other subcellular components is critical to understand the fundamentals of life. The integration of the Gatan K3 high-throughput camera system with one of the most advanced cryo-electron microscopy facilities in Australia and the Southern Hemisphere will transform the capacity of Australian researchers to study the world around us at the molecular det ....High-throughput camera system for biological cryo-electron microscopy. Visualising the structure of biological macromolecules such as proteins and other subcellular components is critical to understand the fundamentals of life. The integration of the Gatan K3 high-throughput camera system with one of the most advanced cryo-electron microscopy facilities in Australia and the Southern Hemisphere will transform the capacity of Australian researchers to study the world around us at the molecular detail needed to advance innovative research. The addition of this equipment to the University of Wollongong's research facility Molecular Horizons will result in a step change in the areas of bionanotechnology, advanced manufacturing, diagnostics, and many other areas at the interface of biology, chemistry and physics.Read moreRead less
Metalloproteomics: A new piece of the systems biology puzzle. Systems biology uses advanced analytical technology to study the complex chemistry of the living cell. Many cellular functions are the result of chemical reactions involving metalloproteins, which are notoriously difficult to study due to the weak bonds between metal and protein that is not normally amenable to traditional proteomic approaches. In partnership with the leading analytical manufacturer Agilent Technologies, this project ....Metalloproteomics: A new piece of the systems biology puzzle. Systems biology uses advanced analytical technology to study the complex chemistry of the living cell. Many cellular functions are the result of chemical reactions involving metalloproteins, which are notoriously difficult to study due to the weak bonds between metal and protein that is not normally amenable to traditional proteomic approaches. In partnership with the leading analytical manufacturer Agilent Technologies, this project aims to adapt and apply advanced mass spectrometry to the study of metalloproteins, developing new methods for studying hundreds of molecules in single experiments. Using the C. elegans model organism the project aims to showcase the importance of metals in biology and develop new solutions for the $2.9 billion proteomics industry.Read moreRead less
Quantifying reactive species in biological systems. This project aims to discover how reactive oxygen and nitrogen species affect cell function, oxidative stress and cell dysfunction. The underlying mechanisms are often unknown because methods to measure reactive species and associated oxidative stress are inadequate. This project will synthesise multi-purpose probes and combine these with mass spectrometry-based analytics and mathematical modelling. This will allow concurrent quantification of ....Quantifying reactive species in biological systems. This project aims to discover how reactive oxygen and nitrogen species affect cell function, oxidative stress and cell dysfunction. The underlying mechanisms are often unknown because methods to measure reactive species and associated oxidative stress are inadequate. This project will synthesise multi-purpose probes and combine these with mass spectrometry-based analytics and mathematical modelling. This will allow concurrent quantification of reactive species in specific cellular compartments in a time-dependent manner that reflects their intricate interaction and metabolism in complex biological systems. This project could clarify whether and how reactive species affect cell function, ageing and disease.Read moreRead less
Discovery Early Career Researcher Award - Grant ID: DE180100206
Funder
Australian Research Council
Funding Amount
$365,058.00
Summary
Intelligently linking nanoscience to neuroscience with glycan biology. This project aims to provide a comprehensive description of the unique cell-surface glycan expression on inflamed neurons, astrocytes, microglia and oligodendrocytes. This project will use glycan profiling data to engineer luminescent nanoparticles with superior neuroimaging qualities for cell type-specific in vivo targeting and drug delivery in the central nervous system. The project outcomes are expected to improve our fund ....Intelligently linking nanoscience to neuroscience with glycan biology. This project aims to provide a comprehensive description of the unique cell-surface glycan expression on inflamed neurons, astrocytes, microglia and oligodendrocytes. This project will use glycan profiling data to engineer luminescent nanoparticles with superior neuroimaging qualities for cell type-specific in vivo targeting and drug delivery in the central nervous system. The project outcomes are expected to improve our fundamental understanding of neurobiological cell-surfaces.Read moreRead less
A scalable, synthetic retina: signal processing in droplet systems with DNA. This project aims to design DNA-based nanotechnology for processing optical signals in synthetic biological systems. The intended outcome of this project is to develop a system for signal transduction in artificial bilayers using new DNA nanostructures. The anticipated goal of the project is to deliver: 1) light-based control of membrane protein insertion into artificial bilayers; 2) novel DNA-based pores that can trans ....A scalable, synthetic retina: signal processing in droplet systems with DNA. This project aims to design DNA-based nanotechnology for processing optical signals in synthetic biological systems. The intended outcome of this project is to develop a system for signal transduction in artificial bilayers using new DNA nanostructures. The anticipated goal of the project is to deliver: 1) light-based control of membrane protein insertion into artificial bilayers; 2) novel DNA-based pores that can transduce signals across membranes; 3) signal processing using multi-compartment biological components composed. Together, this technology allows us to use light and external signals to control biochemical pathways in synthetic systems.Read moreRead less
Resurrecting Ancient Proteins to Unlock New Catalytic Activity. This project aims to study the proteins that nature uses to make penicillin and related antibiotics, and their prehistoric ancestors. By doing so, the project expects to deepen understanding of these important processes, open up ways to make new antibiotics, and generate new knowledge about protein evolution. Intended outcomes include new biocatalysts based on the ancient ones, new antibiotic compounds active against resistant bacte ....Resurrecting Ancient Proteins to Unlock New Catalytic Activity. This project aims to study the proteins that nature uses to make penicillin and related antibiotics, and their prehistoric ancestors. By doing so, the project expects to deepen understanding of these important processes, open up ways to make new antibiotics, and generate new knowledge about protein evolution. Intended outcomes include new biocatalysts based on the ancient ones, new antibiotic compounds active against resistant bacteria, and a richer understanding of how these proteins have evolved over the last 4 billion years. This promises significant benefits in the form of new ways to address the challenge posed by antimicrobial resistance to antibiotics, which is a serious threat to the continued effectiveness of current antibiotics.Read moreRead less