Algebraically informed models of biological sequence evolution. To make sense of the patterns they see in the natural world, biologists across fields as diverse as genetics, epidemiology and biogeography need an accurate picture of evolutionary history. DNA sequences provide an exciting means to establish this picture of the past, but to decode it successfully requires mathematical models of how DNA evolves. Mathematical inconsistencies have been identified with current approaches. In particular ....Algebraically informed models of biological sequence evolution. To make sense of the patterns they see in the natural world, biologists across fields as diverse as genetics, epidemiology and biogeography need an accurate picture of evolutionary history. DNA sequences provide an exciting means to establish this picture of the past, but to decode it successfully requires mathematical models of how DNA evolves. Mathematical inconsistencies have been identified with current approaches. In particular, understanding the effect of natural selection in different parts of the tree of life requires models that behave robustly in the face of shifting evolutionary processes. This project aims to use insights from algebraic methods to construct mathematically consistent models of wide biological utility.Read moreRead less
Discovery Early Career Researcher Award - Grant ID: DE130100423
Funder
Australian Research Council
Funding Amount
$369,061.00
Summary
Group theory and phylogenetics: exploiting symmetry to uncover evolutionary history. Using advanced algebra, structural symmetries inherent in phylogenetic methods will be studied and improved approaches will be derived. DNA sequences contain a wealth of information about evolutionary events that occurred millions of years ago, but extracting this information requires the application of robust methods.
Modelling Food Expenditure, Analysing Nutrient Security, Measuring Hunger and Calculating Purchasing Power Parity: Methodological Advances with Policy Applications. The analysis of consumption changes in selected Asian countries will throw light on Australia's trade potential, especially with one of the fastest growing countries.
More informed debate on the role of trade and aid in reducing hunger and poverty.Following the 2000 Millenium summit and the step up of Australian developmental aid, ....Modelling Food Expenditure, Analysing Nutrient Security, Measuring Hunger and Calculating Purchasing Power Parity: Methodological Advances with Policy Applications. The analysis of consumption changes in selected Asian countries will throw light on Australia's trade potential, especially with one of the fastest growing countries.
More informed debate on the role of trade and aid in reducing hunger and poverty.Following the 2000 Millenium summit and the step up of Australian developmental aid, the subject has returned to the centre stage in policy discussions.
The systematic use of unit value information available elsewhere, but currently lacking in ABS data, will help the latter in improving its HES.
Contribute to "understanding our region and the world"(Key Priority Goal in Research Priority 4 of ARC).
Provide data sets for use in Australian RHD dissertations .
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Advanced matrix-analytic methods with applications. Over the last twenty-five years, matrix-analytic methods have proved to be very successful in formulating and analysing certain classes of stochastic models. Motivated by applications, this project will investigate more advanced matrix-analytic methods than have hitherto been studied.
Managing Fresh-Water Resources in Saline Environments. Australian industry and urban developments often rely on a secure supply of fresh water. In many situations, the fresh water occurs adjacent to large expanses of saline water. This poses special constraints on how the fresh water can be recovered. This project undertakes careful mathematical modelling of fresh water recovery from reservoirs and from within islands (where it may be the only practical source of drinking water). The injecti ....Managing Fresh-Water Resources in Saline Environments. Australian industry and urban developments often rely on a secure supply of fresh water. In many situations, the fresh water occurs adjacent to large expanses of saline water. This poses special constraints on how the fresh water can be recovered. This project undertakes careful mathematical modelling of fresh water recovery from reservoirs and from within islands (where it may be the only practical source of drinking water). The injection and extraction of ground water in novel "mineral leaching" mining technology will also be investigated.Read moreRead less
Special Research Initiatives - Grant ID: SR0354575
Funder
Australian Research Council
Funding Amount
$30,000.00
Summary
Earth and Ocean Informatics and Technology Network (EON-ITnet). Sustainable resource exploration and mining onshore, as well as marine planning, exploration, and defence depend on effective cross-disciplinary investigation, sharing of expertise and technologies for integration and computational analysis of multidimensional data spaces. EON-ITNET will cross-fertilise the use of artificial intelligence, advanced computing and smart information sharing for management, analysis, visualisation and me ....Earth and Ocean Informatics and Technology Network (EON-ITnet). Sustainable resource exploration and mining onshore, as well as marine planning, exploration, and defence depend on effective cross-disciplinary investigation, sharing of expertise and technologies for integration and computational analysis of multidimensional data spaces. EON-ITNET will cross-fertilise the use of artificial intelligence, advanced computing and smart information sharing for management, analysis, visualisation and metadata modelling between these traditionally separate research groups, with the outcome of improving research efficiency and lowering costs. EON-ITNET will form an alliance with the Caltech-based GeoFramework, which is advancing a novel object-oriented data analysis environment, binding community software for Earth visualisation and simulation to 4D data bases.Read moreRead less
Creating new stochastic models to understand the evolution of gene families. This project aims to extend stochastic modelling techniques in order to develop mathematically rigorous and biologically relevant models for the evolution of gene families. The project expects to model evolutionary processes such as gene retention, duplication and loss, and the generation of new gene functions. The duplication and subsequent re-purposing of genes is thought to be a key mechanism for generating evolution ....Creating new stochastic models to understand the evolution of gene families. This project aims to extend stochastic modelling techniques in order to develop mathematically rigorous and biologically relevant models for the evolution of gene families. The project expects to model evolutionary processes such as gene retention, duplication and loss, and the generation of new gene functions. The duplication and subsequent re-purposing of genes is thought to be a key mechanism for generating evolutionary novelty. By applying these models to genome data, the project expects to be able to quantify the importance of these different evolutionary mechanisms. The project will strengthen collaborative links between researchers in stochastic modelling and molecular evolutionary biology.Read moreRead less
Tailoring composite propellers for reduced sound radiation. This project aims to explore the generation of noise by composite propellers and to use this understanding to tailor the composite properties to reduce underwater noise. Propellers are a harmful source of noise in the marine environment, disturbing animal behaviour, revealing the location of naval vessels and interfering with sonar operation. Adaptive composite propellers are potentially quieter than metal propellers, as well as offerin ....Tailoring composite propellers for reduced sound radiation. This project aims to explore the generation of noise by composite propellers and to use this understanding to tailor the composite properties to reduce underwater noise. Propellers are a harmful source of noise in the marine environment, disturbing animal behaviour, revealing the location of naval vessels and interfering with sonar operation. Adaptive composite propellers are potentially quieter than metal propellers, as well as offering improvements in efficiency and fuel consumption. The aims of this project are to understand the physical mechanisms associated with composite propeller noise generation. The outcomes are intended to provide advanced numerical capabilities that will support the development of quieter marine propeller designs to improve defence capability and the acoustic environment for marine mammals.Read moreRead less
A Roadmap for Greening Existing Australian Housing. The project will minimise the impact of the Greenhouse Pollution Reduction Scheme and anticipated rises in water costs on the householders. It will assist the consumers and the building industry in evaluating the environmental and economic costs and benefits of specific retrofitting actions for building envelope and major fixed appliances (thermal insulation, glazing, air infiltration, hot water, heating/cooling, lighting, low water flow and wa ....A Roadmap for Greening Existing Australian Housing. The project will minimise the impact of the Greenhouse Pollution Reduction Scheme and anticipated rises in water costs on the householders. It will assist the consumers and the building industry in evaluating the environmental and economic costs and benefits of specific retrofitting actions for building envelope and major fixed appliances (thermal insulation, glazing, air infiltration, hot water, heating/cooling, lighting, low water flow and water reuse appliances, and solar photovoltaic systems). In addition to assisting a burgeoning renovation industry, the project will enable accurate assessment of the impacts of the Green Loans Program and guide future national and local energy and water reduction policies. Read moreRead less
Fluorinated surfactants and hydrocarbons at coastal airports. Fluorinated surfactants and hydrocarbons at coastal airports. This project aims to develop a model and parameters that describe transport and co-transport of fluoro-surfactants and hydrocarbons, priority pollutants with a wide range of physico-chemical properties, at coastal airports. Sixty percent of Australian airports are in the coastal plain, and all are affected by contamination from internationally banned fluoro-surfactants and ....Fluorinated surfactants and hydrocarbons at coastal airports. Fluorinated surfactants and hydrocarbons at coastal airports. This project aims to develop a model and parameters that describe transport and co-transport of fluoro-surfactants and hydrocarbons, priority pollutants with a wide range of physico-chemical properties, at coastal airports. Sixty percent of Australian airports are in the coastal plain, and all are affected by contamination from internationally banned fluoro-surfactants and hydrocarbons. Their extensive past use at firefighting training grounds resulted in costly remediation worldwide. Understanding the fate of persistent fluoro-surfactants from point sources, and their role in transporting non-polar chemicals such as hydrocarbons, will improve risk-based decision making. This research is expected to form the basis for effective risk management and intervention strategies.Read moreRead less