Early Career Industry Fellowships - Grant ID: IE230100263
Funder
Australian Research Council
Funding Amount
$477,037.00
Summary
Improve genomic testing tools for fertility traits in beef cattle. Fertility is a key driver of productivity and profitability for beef industry; however, a substantial industry challenge is poor fertility and the difficulty and expense of measuring fertility in remote Australia. By integrating multiple omics datasets and fifty thousand fertility phenotypes recorded on beef cattle, the project will identify sequence variation, including structural variants, that underpin genetic variation in cat ....Improve genomic testing tools for fertility traits in beef cattle. Fertility is a key driver of productivity and profitability for beef industry; however, a substantial industry challenge is poor fertility and the difficulty and expense of measuring fertility in remote Australia. By integrating multiple omics datasets and fifty thousand fertility phenotypes recorded on beef cattle, the project will identify sequence variation, including structural variants, that underpin genetic variation in cattle fertility. Our industry partner, which genotypes hundreds of thousands of cattle a year, will produce new genotype arrays and novel low-cost sequencing approaches including these variants, enabling selection that could potentially increase herd reproductive rate by 4%, returning $40M per annum to the farmers.Read moreRead less
Statistical Methods for Next Generation Genome-Wide Association Studies. This project aims to develop cutting-edge statistical methods to analyse large genomic datasets and identify genetic variants associated with inter-individual differences in various human traits. Knowledge of trait-associated DNA variants is instrumental in understanding how natural selection has shaped human traits. By integrating genomic data from diverse and underrepresented populations, this project further expects to c ....Statistical Methods for Next Generation Genome-Wide Association Studies. This project aims to develop cutting-edge statistical methods to analyse large genomic datasets and identify genetic variants associated with inter-individual differences in various human traits. Knowledge of trait-associated DNA variants is instrumental in understanding how natural selection has shaped human traits. By integrating genomic data from diverse and underrepresented populations, this project further expects to contribute to the equitable use of genomic technologies in humans, regardless of geographical origins. Expected outcomes of this research include novel analysis methods and software tools, which should broadly and significantly benefit gene discovery in other species, including those of agricultural relevance.Read moreRead less
Discovery Early Career Researcher Award - Grant ID: DE240101190
Funder
Australian Research Council
Funding Amount
$451,000.00
Summary
Innovating and Validating Scalable Monte Carlo Methods. This project aims to develop innovative scalable Monte Carlo methods for statistical analysis in the presence of big data or complex mathematical models. Existing approaches to scalable Monte Carlo are only approximate, and their inaccuracies are difficult to quantify. This can have a detrimental impact on data-based decision making. The expected outcomes of this project are scalable Monte Carlo methods that are more accurate, fast and capa ....Innovating and Validating Scalable Monte Carlo Methods. This project aims to develop innovative scalable Monte Carlo methods for statistical analysis in the presence of big data or complex mathematical models. Existing approaches to scalable Monte Carlo are only approximate, and their inaccuracies are difficult to quantify. This can have a detrimental impact on data-based decision making. The expected outcomes of this project are scalable Monte Carlo methods that are more accurate, fast and capable of quantifying inaccuracies. Scientists and decision-makers will benefit from the ability to obtain timely, reliable insights for challenging applications.Read moreRead less
Identification of causal variants for complex traits. The aim of this project is to identify causal variants for complex traits in cattle and humans. Although most important traits in agriculture, medicine and evolution are complex traits, very few of the genetic variants affecting these traits are known and this undermines our understanding of how genetic variants affect a trait and practical uses of this knowledge. Huge datasets of individuals with genome sequence and phenotypes and new statis ....Identification of causal variants for complex traits. The aim of this project is to identify causal variants for complex traits in cattle and humans. Although most important traits in agriculture, medicine and evolution are complex traits, very few of the genetic variants affecting these traits are known and this undermines our understanding of how genetic variants affect a trait and practical uses of this knowledge. Huge datasets of individuals with genome sequence and phenotypes and new statistical methods provide the opportunity to close this gap. The outcome will be identification of many genomic variants causing variation in complex traits. This will benefit scientific understanding of complex traits and the ability to predict traits for individuals from their genome sequence.Read moreRead less
Discovery Early Career Researcher Award - Grant ID: DE240100014
Funder
Australian Research Council
Funding Amount
$424,237.00
Summary
Causal relationship between taste and smell perception and eating behaviour. Around half of all Australians have a poor diet, which is a leading cause of many chronic conditions costing over $70 billion annually. This project aims to develop and apply novel statistical methods for determining the genetic basis of human taste and smell perception and its causal effects on eating behaviour. Expected outcomes include delivering new insights into such underlying individual differences for a wide ran ....Causal relationship between taste and smell perception and eating behaviour. Around half of all Australians have a poor diet, which is a leading cause of many chronic conditions costing over $70 billion annually. This project aims to develop and apply novel statistical methods for determining the genetic basis of human taste and smell perception and its causal effects on eating behaviour. Expected outcomes include delivering new insights into such underlying individual differences for a wide range of taste and olfactory traits; advanced analytical methods to assess causality; and a causal network of these sensory traits across over 100 consumable food items. From these outcomes, the benefits will be new strategies for improving food flavours and eating behaviours to enhance agri-food industry growth.Read moreRead less
Australian Laureate Fellowships - Grant ID: FL190100080
Funder
Australian Research Council
Funding Amount
$3,432,323.00
Summary
New frontiers for nonequilibrium systems. The universe is comprised of systems in states of change or responding to a driving force. Yet a fundamental understanding of these nonequilibrium systems that enables predictive design has eluded scientists to date. This program aims to develop ground-breaking principles and methodologies to predict properties of nonequilibrium systems using both statistical physics and molecular simulations. Significantly, by pioneering new theories and building Austra ....New frontiers for nonequilibrium systems. The universe is comprised of systems in states of change or responding to a driving force. Yet a fundamental understanding of these nonequilibrium systems that enables predictive design has eluded scientists to date. This program aims to develop ground-breaking principles and methodologies to predict properties of nonequilibrium systems using both statistical physics and molecular simulations. Significantly, by pioneering new theories and building Australian capacity in this area, we will be able to understand, control and utilise their distinctive behaviour in design. Expected outcomes and benefits are multi-dimensional, including breakthrough theory and new capability for high-end technologies such as nanofluidics, robotics and batteries.Read moreRead less
Prior sensitivity analysis for Bayesian Markov chain Monte Carlo output. This project aims to develop the first set of techniques to implement an automated output sensitivity analysis for Markov Chain Monte Carlo (MCMC) estimation methods. Computationally intense Bayesian MCMC provide a powerful alternative to classical methods for the estimation of economic models. An obstacle to their wider application is that researchers need to specify prior beliefs about model parameters that will affect t ....Prior sensitivity analysis for Bayesian Markov chain Monte Carlo output. This project aims to develop the first set of techniques to implement an automated output sensitivity analysis for Markov Chain Monte Carlo (MCMC) estimation methods. Computationally intense Bayesian MCMC provide a powerful alternative to classical methods for the estimation of economic models. An obstacle to their wider application is that researchers need to specify prior beliefs about model parameters that will affect the results. The expected outcomes will enable researchers to undertake a routine assessment of the sensitivity of the results to prior inputs.Read moreRead less
Scalable and Robust Bayesian Inference for Implicit Statistical Models. This project aims to develop the next generation of efficient methods for fitting complex simulation-based statistical models to data. Practitioners and scientists are interested in such implicit models to enable discoveries, produce accurate predictions and inform decisions under uncertainty. However, the associated computational cost has restricted researchers to implicit models that must have a small number of parameters ....Scalable and Robust Bayesian Inference for Implicit Statistical Models. This project aims to develop the next generation of efficient methods for fitting complex simulation-based statistical models to data. Practitioners and scientists are interested in such implicit models to enable discoveries, produce accurate predictions and inform decisions under uncertainty. However, the associated computational cost has restricted researchers to implicit models that must have a small number of parameters and be well specified, impeding scientific progress. This project will develop new computational methods and algorithms for implicit models that scale to high dimensions and are robust to misspecification. Benefits will arise from the more routine use of implicit models in epidemiology, biology, ecology and other fields.Read moreRead less
Advances in Sequential Monte Carlo Methods for Complex Bayesian Models. This project aims to develop efficient statistical algorithms for parameter estimation of complex stochastic models that currently cannot be handled. Parameter estimation is an essential component of mathematical modelling for answering scientific questions and revealing new insights. Current parameter estimation methods can be inefficient and require too much user intervention. This project will develop novel Bayesian alg ....Advances in Sequential Monte Carlo Methods for Complex Bayesian Models. This project aims to develop efficient statistical algorithms for parameter estimation of complex stochastic models that currently cannot be handled. Parameter estimation is an essential component of mathematical modelling for answering scientific questions and revealing new insights. Current parameter estimation methods can be inefficient and require too much user intervention. This project will develop novel Bayesian algorithms that are optimally automated and efficient by exploiting ever-improving parallel computing devices. The new methods will allow practitioners to process realistic models, enabling new scientific discoveries in a wide range of disciplines such as biology, ecology, agriculture, hydrology and finance.Read moreRead less