Special Research Initiatives - Grant ID: SR0567460
Funder
Australian Research Council
Funding Amount
$85,000.00
Summary
Development of a collaborative environment for high throughput biology discovery pipelines. Modern biological science involves the parallel high-throughput investigation of many hundreds of different experimental targets. Traditional approaches for recording, analysing, mining and cross comparing experimental data are inadequate for conducting high throughput experiments. This proposal aims to develop new algorithms in the high throughput arena that will revolutionize biological discovery.
Linkage Infrastructure, Equipment And Facilities - Grant ID: LE0775679
Funder
Australian Research Council
Funding Amount
$700,000.00
Summary
Advanced Microscopy Infrastructure for use in Frontier Technologies. This proposal seeks to establish key microscopy facilities to support the research projects from leading researchers from four major Universities. The new facilities build on the close collaborative links between the partner organisations and the request is for specialised equipment that is complementary to that available at, for example, the Australian Synchrotron. The new facilities will enhance progress in the the important ....Advanced Microscopy Infrastructure for use in Frontier Technologies. This proposal seeks to establish key microscopy facilities to support the research projects from leading researchers from four major Universities. The new facilities build on the close collaborative links between the partner organisations and the request is for specialised equipment that is complementary to that available at, for example, the Australian Synchrotron. The new facilities will enhance progress in the the important areas of nanotechnology, biotechnology and advanced materials to the benefit of the community and will play a crucial role in training the next generation of researchers to drive these critical areas of science and technology.Read moreRead less
Special Research Initiatives - Grant ID: SR0566602
Funder
Australian Research Council
Funding Amount
$87,933.00
Summary
Development of a collaborative online environment and workbench for the investigation of protein folding. The investigation of protein folding – one the most important unsolved biological problems, is generating large amounts of complex data. This proposal aims to develop a highly collaborative content management system and interactive data mining tools that will allow the open exchange and analysis of protein folding data. A chief goal of this proposal is, by creating a rich informatics envir ....Development of a collaborative online environment and workbench for the investigation of protein folding. The investigation of protein folding – one the most important unsolved biological problems, is generating large amounts of complex data. This proposal aims to develop a highly collaborative content management system and interactive data mining tools that will allow the open exchange and analysis of protein folding data. A chief goal of this proposal is, by creating a rich informatics environment, to foster the exchange of ideas and rapid dissemination of new data across the international array of groups working in parallel on various aspects of the folding problem.Read moreRead less
Mathematical Methods for Next Generation Sequencing. The emergence of a new generation of high throughput genomic sequencing technologies is providing unprecedented opportunities for biological research. Hidden within the huge amounts of data generated by this technology is information about the expression and regulation of genes, and the complex functional purpose of non-coding, so called 'junk', DNA. Development of mathematical and statistical tools is essential to interpreting these data. The ....Mathematical Methods for Next Generation Sequencing. The emergence of a new generation of high throughput genomic sequencing technologies is providing unprecedented opportunities for biological research. Hidden within the huge amounts of data generated by this technology is information about the expression and regulation of genes, and the complex functional purpose of non-coding, so called 'junk', DNA. Development of mathematical and statistical tools is essential to interpreting these data. The proposed research will enhance Australia's reputation for developing novel quantitative techniques at the cutting edge of modern biology. The proposed project has a broad range of potential applications in biotechnology, particularly in the medical and agricultural industries.Read moreRead less
Australian Laureate Fellowships - Grant ID: FL0992247
Funder
Australian Research Council
Funding Amount
$2,988,295.00
Summary
Advances at the frontiers of subatomic physics and cross-disciplinary applications of the associated techniques. The candidate is an international scientific leader, in terms of his own research, his responsibilities within the United States Department of Energy (DoE) and his role as Chair of the International Union of Pure and Applied Physics (IUPAP) Working Group on International Cooperation in Nuclear Physics. His return to South Australia to establish a major new research centre in the physi ....Advances at the frontiers of subatomic physics and cross-disciplinary applications of the associated techniques. The candidate is an international scientific leader, in terms of his own research, his responsibilities within the United States Department of Energy (DoE) and his role as Chair of the International Union of Pure and Applied Physics (IUPAP) Working Group on International Cooperation in Nuclear Physics. His return to South Australia to establish a major new research centre in the physical sciences will dramatically enhance the State's reputation in science and engineering, an essential component of its contribution to the nation's defence. It will underline Australia's commitment to contribute its share to advancing fundamental science. The involvement of senior researchers from fields as diverse as applied optics and mathematical biology will ensure that the opportunities for cross-disciplinary research are fully exploited.Read moreRead less
Disulfide Bonds and Protein Folding. This work will advance our understanding of protein folding, which has important implications in biotechnology, impacting on commercial production of recombinant proteins (for pharmaceutical and biomedical applications) and on 1000s of research laboratories worldwide that use recombinant technologies. This research could also contribute to medicine (new treatments for diseases of protein misfolding like Alzheimer's), and to membrane protein structural biology ....Disulfide Bonds and Protein Folding. This work will advance our understanding of protein folding, which has important implications in biotechnology, impacting on commercial production of recombinant proteins (for pharmaceutical and biomedical applications) and on 1000s of research laboratories worldwide that use recombinant technologies. This research could also contribute to medicine (new treatments for diseases of protein misfolding like Alzheimer's), and to membrane protein structural biology. This work could yield economic benefits in the long-term through patentable outcomes and will benefit the community by producing high impact research papers, providing training to Australians and forging links with renowned international scientists.Read moreRead less
TOWARDS A COMPLETE DESCRIPTION OF HOW ENZYMES WORK: development of simulation methods and protocols, blind test predictions, and experimental validation. Enzymes catalyze quite fantastic chemistry under mild physiological conditions. Many special chemical concepts (such as "transition-state stabilization" and "entropy-enthalpy compensation") proposed to explain these powers are unnecessary. Uniquely for a catalyst, these powers are integral to the structure, properties and dynamics of the protei ....TOWARDS A COMPLETE DESCRIPTION OF HOW ENZYMES WORK: development of simulation methods and protocols, blind test predictions, and experimental validation. Enzymes catalyze quite fantastic chemistry under mild physiological conditions. Many special chemical concepts (such as "transition-state stabilization" and "entropy-enthalpy compensation") proposed to explain these powers are unnecessary. Uniquely for a catalyst, these powers are integral to the structure, properties and dynamics of the protein, as constrained and selected by evolution. The question is how do they work? Answering this requires energetic and thermodynamic analysis beyond current experimental techniques, but accessible by computer simulation. We aim to develop a robust toolkit of simulation methods and protocols, blind test them by predicting the mechanism of a new enzyme, with followup experimental validation.
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Importance of conformational and electrostatic contributions in simulations of enzyme reaction mechanisms. The research will contribute to the development of biomolecular simulation in Australia by demonstrating its potential to complement experiment, and also promote the effective use of APAC (Australian national supercomputer facilities) resources by providing advanced programs and computational protocols for other researchers. It will assist the diffusion of computational biology technology i ....Importance of conformational and electrostatic contributions in simulations of enzyme reaction mechanisms. The research will contribute to the development of biomolecular simulation in Australia by demonstrating its potential to complement experiment, and also promote the effective use of APAC (Australian national supercomputer facilities) resources by providing advanced programs and computational protocols for other researchers. It will assist the diffusion of computational biology technology into industrial applications such as rational drug design and protein engineering, as, for example, in our associated Linkage project grant, and provide novel insights into protein engineering and other sorts of design, which transcend concepts currently used in biomimetic chemistry.Read moreRead less
HIDE AND SPEAK - COLOUR COMMUNICATION IN REEF FISH. Fish play an important role in many Australian's lives, they are a source of recreation for scuba divers, snorkelers and fishermen, they are a draw card for tourists as well as a healthy source of food. This project will investigate the visual world of fish, unravelling their use of colour communication, thereby identifying environmental factors affecting successful communication. Such a study will provide insight into the impact on reef fish o ....HIDE AND SPEAK - COLOUR COMMUNICATION IN REEF FISH. Fish play an important role in many Australian's lives, they are a source of recreation for scuba divers, snorkelers and fishermen, they are a draw card for tourists as well as a healthy source of food. This project will investigate the visual world of fish, unravelling their use of colour communication, thereby identifying environmental factors affecting successful communication. Such a study will provide insight into the impact on reef fish of changes in water quality (e.g. river runoff) and temperature (e.g. bleaching events), as well as factors that affect the successful rearing of fish in aquaculture.
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Colour vision and photoreceptors in reef fish: a model system to discover the function of double cones. Humans are visual animals and as lucky Australians we love to look at The Great Barrier Reef. This project, while rooted in the complexities of visual neurobiology, uses a recently discovered set of 4 different reef fish from the GBR to teach us more about fundamental principles in vision. These fish, diverse as damselfish and snappers, will help solve a mystery centuries old. Double cones are ....Colour vision and photoreceptors in reef fish: a model system to discover the function of double cones. Humans are visual animals and as lucky Australians we love to look at The Great Barrier Reef. This project, while rooted in the complexities of visual neurobiology, uses a recently discovered set of 4 different reef fish from the GBR to teach us more about fundamental principles in vision. These fish, diverse as damselfish and snappers, will help solve a mystery centuries old. Double cones are the commonest daytime photoreceptor in the eyes of almost all vertebrates (humans without them are exceptions) and yet nobody knows what they do. Reef fish have them, so let's ask them what they see!Read moreRead less